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Report for Sequence Feature Glyma03g27865

Feature Type:gene_model
Chromosome:Gm03
Start:35640069
stop:35643599
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g27865
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G40950AT Annotation by Michelle Graham. TAIR10: Basic-leucine zipper (bZIP) transcription factor family protein | chr2:17087823-17090326 REVERSE LENGTH=721 SoyBaseE_val: 8.00E-165ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PTHR13301Panther X-BOX TRANSCRIPTION FACTOR-RELATED JGI ISS
PTHR13301:SF22Panther JGI ISS
PF00170PFAM bZIP transcription factor JGI ISS
UniRef100_A4ZGR2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bZIP38 (Fragment) n=1 Tax=Glycine max RepID=A4ZGR2_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1JN15UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JN15_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g27865
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g27865 not represented in the dataset
Glyma03g27865 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g27865
ParalogEvidenceComments
Glyma19g30681 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g27865 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g123200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g27865
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g27865
>Glyma03g27865.1   sequence type=CDS   gene model=Glyma03g27865   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACAGGGTTTTAGCGCGTGAACCACGCGCCCTGCTACAAATAACGAACGAAACCCCAAAAATTCCCAAAACCCATTTCTTCTCCTCCATTTCTCAGAAACCCTCTCGAATGACTGAGTCAATGCCCGCCGTGGAACCGTCGCCGGAGCCTCCGGCGTCCGATATCGTGTTCGATGACTTCTCCACCGACTTCAGCGCCTTCCCCATCCCCTCCATGGACTCGCTCTTCAACACTACTGATGGGCTCCCCTTCCCCTCCGATCTCGAATTCGGCATGGATTTCAACAACAACAACGGAGAATTCGAAATCACCTTCGACGACCTCGATGACATCTACATCCCCTCCGACGCCGAGGATTTCCTCCTCCCCGACGCCTGTAACCCTAATTACGCCTCCGTTTCGCCGCCCATCGACGATTCCTCCGCGAAGAATTCCGATTCCGACGCATCCGCGGTTTCCGGCGACGGCGTTTCCAGGTTTTTCAATTCGCAAGTGTCGGAATCTGATTCCGCCGATAATGTTAGGGTTCCGAGCGTTCCTTCGCCGGAGGCTGAATTCTGCGAACGGGAGGAGTCTTCCAACGGACCGGTTTCGTCGCAGGGTTCCGGCAACGGCGGATCGGGTGTATACGAGGCCATGCACTCGCCCTCACCTGATTCTGGCCCTTACGAGAGAGACATAACATCGTTTCATGCACATGCAGCTACAAACAATGGTGTGAAAATGGAGGAAGTTCCAGCTTTTGATCTGAAGAGGAAGAAAGGGAGTTGCGAGGGAAGTGCTACCAAGCACAGAAGGTTCTCTTCCTCTGTGGAGAATAATAATAATAATAAGACTGAGAAACAGTTTCAATCTGATTTGAATGGAATTGAAGACGAGGATGAGAAGAGGAAGGCGAGGTTGATGAGGAACAGGGAAAGTGCACAGCTTTCTAGGCAGAGGAAGAAGCATTACGTGGAGGAGCTTGAAGAGAAAGTTAGATCATTGAATTCCATCATTGCTGATATGAGTAGTAAGATGTCGTATATGGTGGCTGAGATTGCTACTCTTAGACAGCAAGTGGGTGCTGCTGCTGGTGTGATGTGTCCTCCTCCTCCTCCTCCTGCTCCTGGGATGTACCCTCATCATCCTCCAATGGCACCCATGCCTTATCCATGGATGCCATGTGCTCCTTATGTTGTTAAGCCTCAAGGGTCTCAGGTTCCTTTGGTTCCCATTCCTAGGTTGAAGCCTCAGCAACCTGCTTCAGCCCCCAAGAGTAAAAAGAGTGAGAGTAAGAAGAGTGAGGGGAAAACTAAGAAGGTTGCTAGTATTAGTTTGTTGGGTTTGTTTTTCTTTATCATGCTTTTTGGTGGGCTTGTTCCTGTTGTTGATTTTAGGTTTGGGGGTTTAGTGGACAATGTTCCCGGTACTGGTAGTTCTAATTATGTTAGTGATAGGGTGTATGGTCATGGTGGAGGGAAGGTTTGGTCTTTGAATGGTCCTAGGAATGGGTCTGGAAGAGATGGGGATGTAGGATTTTCTAATGGGAGGTTTAGTGTTTCTGACAGAGTGAAGAATTATGAGAAGAGAGGCCGGAATTTAAGAGAAGAAAGGCATGATCGGAAAGGCCCAGATGATTCCAGTCGTCAGGGCAATGCTAGTGAGCCCCTTGTTGCTTCTCTGTATGTTCCTAGGAATGATAAGATGGTGAAGATTGATGGGAACTTGATTATCCATTCCATTATGGCCAGTGAGAAAGCCATGGCATCTCAAACTGCTGAGGCAAAGAAGGACAAGAGGGAAACTGGGTTGGCCATTCCTAAGGATTTGGATTCTGCATTGGCTATTCCTGGAGTTGGAAGAAGCAGAGATCAACATCCACATGTGTATAGGGTTTCTCCTGAACAGAGGAAGGCTCTTGGCTCTGGTTCAACCAAAGCTTTGAAGGACCATATGAAGTCCTCTGCAACTGATGGTAAAATGCAACAGTGGTTCCGTGAAGGTCTTGCAGGGCCAATGTTAAGTTCTGGCATGTGCACTGAAGTTTTCCAGTTTGATGCTTCTCCAAGTCCTGGAGCAATAGTTCCTGCAACATCAGTAGCCAATGTTTCCACCGAAAACCATCAGAATGCTACCAGTGTTAAGAAGACCAGGAATAGAAGAACCCTTCATGAGCTCCCAGAGCCGCTTAATGGGTCTAGTCTGAACATAACTGAAGAACAAGTGAAAAATTTGCAGAAAGACCACTTCCATGGTAACAAGTCTTCTATGGTGGTTTCAGTCCTTGTTGATCCCAGAGAGGCTGGTGATGGTGATGTTGATGTTGATGGCATGATGAGGCCAAAGTCACTCTCTCGGATTTTTGTGGTTGTGCTAATTGATAGTGTCAAGTATGTCACTTACTCGTGTGGTCTGCCTCGTGCTTCTCCTCATTTAGTGACTGGTTATGTATGA
Predicted protein sequences of Glyma03g27865
>Glyma03g27865.1   sequence type=predicted peptide   gene model=Glyma03g27865   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYRVLAREPRALLQITNETPKIPKTHFFSSISQKPSRMTESMPAVEPSPEPPASDIVFDDFSTDFSAFPIPSMDSLFNTTDGLPFPSDLEFGMDFNNNNGEFEITFDDLDDIYIPSDAEDFLLPDACNPNYASVSPPIDDSSAKNSDSDASAVSGDGVSRFFNSQVSESDSADNVRVPSVPSPEAEFCEREESSNGPVSSQGSGNGGSGVYEAMHSPSPDSGPYERDITSFHAHAATNNGVKMEEVPAFDLKRKKGSCEGSATKHRRFSSSVENNNNNKTEKQFQSDLNGIEDEDEKRKARLMRNRESAQLSRQRKKHYVEELEEKVRSLNSIIADMSSKMSYMVAEIATLRQQVGAAAGVMCPPPPPPAPGMYPHHPPMAPMPYPWMPCAPYVVKPQGSQVPLVPIPRLKPQQPASAPKSKKSESKKSEGKTKKVASISLLGLFFFIMLFGGLVPVVDFRFGGLVDNVPGTGSSNYVSDRVYGHGGGKVWSLNGPRNGSGRDGDVGFSNGRFSVSDRVKNYEKRGRNLREERHDRKGPDDSSRQGNASEPLVASLYVPRNDKMVKIDGNLIIHSIMASEKAMASQTAEAKKDKRETGLAIPKDLDSALAIPGVGRSRDQHPHVYRVSPEQRKALGSGSTKALKDHMKSSATDGKMQQWFREGLAGPMLSSGMCTEVFQFDASPSPGAIVPATSVANVSTENHQNATSVKKTRNRRTLHELPEPLNGSSLNITEEQVKNLQKDHFHGNKSSMVVSVLVDPREAGDGDVDVDGMMRPKSLSRIFVVVLIDSVKYVTYSCGLPRASPHLVTGYV*






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