Report for Sequence Feature Glyma03g27800
Feature Type: gene_model
Chromosome: Gm03
Start: 35582912
stop: 35588047
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g27800
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G68570 AT
Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein | chr1:25746811-25750110 FORWARD LENGTH=596
SoyBase E_val: 0 ISS
GO:0006857 GO-bp
Annotation by Michelle Graham. GO Biological Process: oligopeptide transport
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
KOG1237
KOG
H+/oligopeptide symporter
JGI ISS
PTHR11654 Panther
OLIGOPEPTIDE TRANSPORTER-RELATED
JGI ISS
PTHR11654:SF56 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00854 PFAM
POT family
JGI ISS
UniRef100_G7L4V0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Peptide transporter PTR5 n=1 Tax=Medicago truncatula RepID=G7L4V0_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI0001890C2D UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0001890C2D related cluster n=1 Tax=unknown RepID=UPI0001890C2D
SoyBase E_val: 0 ISS
Expression Patterns of Glyma03g27800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma03g27800
Paralog Evidence Comments
Glyma19g30660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g27800 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g122500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g27800
Coding sequences of Glyma03g27800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g27800.1 sequence type=CDS gene model=Glyma03g27800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGATAGAGAAGAGCACTAAGGGCAGTGCGGAAATAGGAGAGAAAGAAGAGAAGAAGAAGAAGCAGCATCGACGAGGAGGCATCAGAACATTACCTTTCATTCTTGCAAATGAAGTGTGTGACAGATTTGCAAGTGCTGGTTTTCATGGTAACTTGATAAGTTACTTGACCCAAGAGCTGAACATGCCATTGGTAGCTGCCTCAAACACACTGACAAACTTTGGAGGAACATCTAGCTTCACCCCTCTCATTGGGGCTATTATAGCAGATTCCTTTGCTGGACGTTTTTGGACCATTACCGTTGCTTCTCTCATTTATGAACTGGGATTGATTAGCATCACTGTATCAGCTATACTGCCACAATTTCGTCCCCCACCATGCCCAACACAAGCTAATTGCCAAGAAGCCACATCCTCACAACTGTGGATACTCTACATCTCCCTCCTCCTCACATCTGTTGGATCAGGTGGCATTAGACCATGTGTTGTGCCCTTTTCAGCAGACCAAATTGACATGACCAAAAGTGGTGTGGCATCAAGAAAGTGGAACATCTTCAATTGGTACTTTTTCAGCATGGGCTTCGCTTCTCTTAGTGCTTTGACCATTGTGGTTTACATCCAAGACAACATGGGCTGGGGTTGGGGCCTTGGAATTCCATGCATTGCCATGTTGATATCCATCGTTGCCTTTGTGTTGGGCTCACCACTTTATAAGACCGTAAAACCAGAAGGGAGCCCTTTGGTTCGTTTGGCCCAAGTAACCGTGGCAGCTATAAAGAAAAGGAAGGAGGCTTTGCCAGAAGATCCCAAGCTTTTGTACCATAATTGGGAACTTGATGCTTCAATTTCTTTAGAAGGGAGGCTTCTACACTCTGATCAATATAAATGGTTGGACAAAGCTGCAATTGTCACAGAGGAGGAGGCCAAAGATCCAACTACAACACCAAAATTATGGAAATTAGCCACTGTCCACAGAGTTGAGGAGCTAAAATCCATCATCAGAATGCTTCCAATTTGGGCATCAGGAATCCTGCTCATAACTTCTTCATCACATCTGCACAGTTTTGTGATTCAACAAGCTCGCACGATGGACCGTCACCTCTCTCCCTCGTTCCAAATTTCCCCAGCCAGCATGTCCATTTTCAGCGTGCTAACCATGATGTCAGGAGTTGTTCTATATGAACGCCTCTTTGTTCCCTTTGCGCGCAGATTCACAGGGAACCCTTCTGGAATCACATGTTTGCAAAGAATGGGAATAGGCTTCATAATCAATATCATAGCCACTGTGATTGCTGGCCTAATGGAAATGAAAAGGAAATCTGTTGCTGCTAAGTACCACTTATTGGATGATCCAAAAGCCACTATTCCTATAAGTGTGTTCTGGTTGGTACCTCAGTATTGCCTTCATGGGGTGGCTGAAATTTTCATGTCTGTTGGGCATTTGGAATTTCTCTTTGAGCAATCACCTGAAAGCATGAGAAGCAGTGCTACAGCACTGTACTGCATAACCACAGCCATTGGGAACTACATGGGTACATTGCTGGTGTCATTGGTGCATAAGTACACTGGCAAGGAGAATAATTGGCTTCCGGATAGGAACCTCAATAGGGGTGGATTGGACTACTATTATTTTCTTGTTAGTGGGATTCAAGTTGTGAATCTCGTTTATTATTTTATATGTGCTTGGTTTTACACTTACAAGTCCGTGGAAGAAATTAGTGAAAAGAACAAGGAAGAGGATTTGGAACAAGCCAACGAACATGTCTCATCTGATGACAAGTTAAATGATGGTAAGGAGGAAGAAAAGAGAGGATTAACGAAAGATGAATGA
Predicted protein sequences of Glyma03g27800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g27800.1 sequence type=predicted peptide gene model=Glyma03g27800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEIEKSTKGSAEIGEKEEKKKKQHRRGGIRTLPFILANEVCDRFASAGFHGNLISYLTQELNMPLVAASNTLTNFGGTSSFTPLIGAIIADSFAGRFWTITVASLIYELGLISITVSAILPQFRPPPCPTQANCQEATSSQLWILYISLLLTSVGSGGIRPCVVPFSADQIDMTKSGVASRKWNIFNWYFFSMGFASLSALTIVVYIQDNMGWGWGLGIPCIAMLISIVAFVLGSPLYKTVKPEGSPLVRLAQVTVAAIKKRKEALPEDPKLLYHNWELDASISLEGRLLHSDQYKWLDKAAIVTEEEAKDPTTTPKLWKLATVHRVEELKSIIRMLPIWASGILLITSSSHLHSFVIQQARTMDRHLSPSFQISPASMSIFSVLTMMSGVVLYERLFVPFARRFTGNPSGITCLQRMGIGFIINIIATVIAGLMEMKRKSVAAKYHLLDDPKATIPISVFWLVPQYCLHGVAEIFMSVGHLEFLFEQSPESMRSSATALYCITTAIGNYMGTLLVSLVHKYTGKENNWLPDRNLNRGGLDYYYFLVSGIQVVNLVYYFICAWFYTYKSVEEISEKNKEEDLEQANEHVSSDDKLNDGKEEEKRGLTKDE*