Glyma03g27760 - SoyBase

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Report for Sequence Feature Glyma03g27760

Feature Type:	gene_model
Chromosome:	Gm03
Start:	35528525
stop:	35531163
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g27760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G07050	AT	Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein \| chr5:2191533-2193416 REVERSE LENGTH=402	SoyBase	E_val: 2.00E-174	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
UniRef100_B9RU50	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4, putative n=1 Tax=Ricinus communis RepID=B9RU50_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JN07	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JN07_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g27760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g27760

Paralog	Evidence	Comments
Glyma19g30640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g27760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g122200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g27760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g27760

Limit To All Plant Sequences

>Glyma03g27760.2   sequence type=transcript   gene model=Glyma03g27760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTACAACCGTAGTAGTTAGTTTTAAGTACGGTTCTCCACACACACCTCTACGGATCCTAACTCTTATAAGCTATAAATACCAAAGTGGGGGTAACGTTTTTCACTTAGGAGACACAAACAACCACAAGTGTTCTTCCTCTGTAAACACACAAACTCTGTTCCTATTTCAGAGTACTGTCCCTTTACCTCGTACACATCAAACAATGGAAGGAGATGGGTATTGTGGGAGTTTCTTTCAGAGGTGCAAGCCTTACATAGCCATGATTTCTCTGCAATTCGGGTTTGCGGGTATGAACATAATCACCAAGGTTTCCCTCAACCGTGGGATGAGCCACTATGTGCTTGTGGTTTATAGACACGCCTTTGCTACTGCAGCTATTGCTCCTTTTGCTATTGTTCTAGAGAGGAAAGTGAGGCCCAAGATTACATTTCTCATGTTCATGCAAATATTCGTGTTGGGTCTCCTTGGGCCTGTGATTGATCAGAACTTATATTATGCGGGGTTGAAATTTACTTCCCCTACCTACTCATGTGCGATAAGCAACATGCTCCCTGCTATGACATTTGTGATGGCTGCTATTTTCAGGATGGAGAAGTTAAACGTGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGGAACTGTAGTAACAGTTGCTGGGGCCATGTTGATGACATTGTACAAAGGGCAAGTAATCAGTTTCTTGGGGTCTAAGTACATGCATCACCCAAGAAACTATGTACCTGAAAACAACACTGATTCTGGTGAAAAGGATTGGTTCAAGGGTTCTGTTCTTCTCGTACTTGCCACCCTTTCATGGGCTTCTTTCTTCATCCTTCAGGCAGTGACATTAAGGAAATACCCTGCTCAGCTCTCCCTCACAGCACTTGTGTGTGCCTTAGGTACACTGCAATCAATTGCAGTTACCTTTGTCATGGAGCACAAACCATCTGTTTGGACCATTGGCTGGGACATGAACCTTCTTGCTGCAGCCTATGCTGGAATAATATCATCAGGTATCACCTACTATGTTCAAGGGATTGTCATGCAGAAAAAAGGGCCTGTTTTCGTTACTGCTTTCAGCCCTTTGATGATGATTATCGTAGCCATCATGGGTACCTTCATCCTTGCAGAAAAAATATATCTTGGAGGGGTCATTGGAGCTATTCTCATAGTAATGGGACTTTACTCGGTTCTGTGGGGCAAGCACAAGGAGAACAAAGAGAAAGAGGCAGAGATAACCATTGAGGTATTGAAGTGTTGTTCAGAAAATGGGATGAGGTTGGAGACTGTGGTAGAAGATGCTGAAACAAACAACGACATTGAGATGCAAAAGGGTGAAGCCTCAAGAGAGTTAAGGGTAGCCATTGGAGTTCCAAAAGTTTAAAGTGGTTAAGATTAGAAAGGAAAGGGATGAATAATAATAGAGGCTGCAATGAAAAAAGGGGTCTTTAATTGAGAGCAGAGAAATTGAAAGGGGTTTTGTTTTGTGTACTCACCATCTTTCTTCGGAAAATTAACTAAGGCTTATTTTTTTCTTTCTTTTTTGTATTTTGATTAGGACCTTATGTGTGGACCTTACTGTCCATAATGTAACTTAAATTTTGCACACTTTGGTGAAAGGAAAATTGACATTTGCAGAAATTCTCTCTCTCTCTTATGACAGGTGTAAATG

Coding sequences of Glyma03g27760

Limit To All Plant Sequences

>Glyma03g27760.1   sequence type=CDS   gene model=Glyma03g27760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAGATGGGTATTGTGGGAGTTTCTTTCAGAGGTGCAAGCCTTACATAGCCATGATTTCTCTGCAATTCGGGTTTGCGGGTATGAACATAATCACCAAGGTTTCCCTCAACCGTGGGATGAGCCACTATGTGCTTGTGGTTTATAGACACGCCTTTGCTACTGCAGCTATTGCTCCTTTTGCTATTGTTCTAGAGAGGAAAGTGAGGCCCAAGATTACATTTCTCATGTTCATGCAAATATTCGTGTTGGGTCTCCTTGGGCCTGTGATTGATCAGAACTTATATTATGCGGGGTTGAAATTTACTTCCCCTACCTACTCATGTGCGATAAGCAACATGCTCCCTGCTATGACATTTGTGATGGCTGCTATTTTCAGGATGGAGAAGTTAAACGTGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGGAACTGTAGTAACAGTTGCTGGGGCCATGTTGATGACATTGTACAAAGGGCAAGTAATCAGTTTCTTGGGGTCTAAGTACATGCATCACCCAAGAAACTATGTACCTGAAAACAACACTGATTCTGGTGAAAAGGATTGGTTCAAGGGTTCTGTTCTTCTCGTACTTGCCACCCTTTCATGGGCTTCTTTCTTCATCCTTCAGGCAATGACATTAAGGAAATACCCTGCTCAGCTCTCCCTCACAGCACTTGTGTGTGCCTTAGGTACACTGCAATCAATTGCAGTTACCTTTGTCATGGAGCACAAACCATCTGTTTGGACCATTGGCTGGGACATGAACCTTCTTGCTGCAGCCTATGCTGGAATAATATCATCAGGTATCACCTACTATGTTCAAGGGATTGTCATGCAGAAAAAAGGGCCTGTTTTCGTTACTGCTTTCAGCCCTTTGATGATGATTATCGTAGCCATCATGGGTACCTTCATCCTTGCAGAAAAAATATATCTTGGAGGGGTCATTGGAGCTATTCTCATAGTAATGGGACTTTACTCGGTTCTGTGGGGCAAGCACAAGGAGAACAAAGAGAAAGAGGCAGAGATAACCATTGAGGTATTGAAGTGTTGTTCAGAAAATGGGATGAGGTTGGAGACTGTGGTAGAAGATGCTGAAACAAACAACGACATTGAGATGCAAAAGGGTGAAGCCTCAAGAGAGTTAAGGGTAGCCATTGGAGTTCCAAAAGTTTAA

>Glyma03g27760.2   sequence type=CDS   gene model=Glyma03g27760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAGATGGGTATTGTGGGAGTTTCTTTCAGAGGTGCAAGCCTTACATAGCCATGATTTCTCTGCAATTCGGGTTTGCGGGTATGAACATAATCACCAAGGTTTCCCTCAACCGTGGGATGAGCCACTATGTGCTTGTGGTTTATAGACACGCCTTTGCTACTGCAGCTATTGCTCCTTTTGCTATTGTTCTAGAGAGGAAAGTGAGGCCCAAGATTACATTTCTCATGTTCATGCAAATATTCGTGTTGGGTCTCCTTGGGCCTGTGATTGATCAGAACTTATATTATGCGGGGTTGAAATTTACTTCCCCTACCTACTCATGTGCGATAAGCAACATGCTCCCTGCTATGACATTTGTGATGGCTGCTATTTTCAGGATGGAGAAGTTAAACGTGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGGAACTGTAGTAACAGTTGCTGGGGCCATGTTGATGACATTGTACAAAGGGCAAGTAATCAGTTTCTTGGGGTCTAAGTACATGCATCACCCAAGAAACTATGTACCTGAAAACAACACTGATTCTGGTGAAAAGGATTGGTTCAAGGGTTCTGTTCTTCTCGTACTTGCCACCCTTTCATGGGCTTCTTTCTTCATCCTTCAGGCAGTGACATTAAGGAAATACCCTGCTCAGCTCTCCCTCACAGCACTTGTGTGTGCCTTAGGTACACTGCAATCAATTGCAGTTACCTTTGTCATGGAGCACAAACCATCTGTTTGGACCATTGGCTGGGACATGAACCTTCTTGCTGCAGCCTATGCTGGAATAATATCATCAGGTATCACCTACTATGTTCAAGGGATTGTCATGCAGAAAAAAGGGCCTGTTTTCGTTACTGCTTTCAGCCCTTTGATGATGATTATCGTAGCCATCATGGGTACCTTCATCCTTGCAGAAAAAATATATCTTGGAGGGGTCATTGGAGCTATTCTCATAGTAATGGGACTTTACTCGGTTCTGTGGGGCAAGCACAAGGAGAACAAAGAGAAAGAGGCAGAGATAACCATTGAGGTATTGAAGTGTTGTTCAGAAAATGGGATGAGGTTGGAGACTGTGGTAGAAGATGCTGAAACAAACAACGACATTGAGATGCAAAAGGGTGAAGCCTCAAGAGAGTTAAGGGTAGCCATTGGAGTTCCAAAAGTTTAA

Predicted protein sequences of Glyma03g27760

Limit To All Plant Sequences

>Glyma03g27760.1   sequence type=predicted peptide   gene model=Glyma03g27760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGDGYCGSFFQRCKPYIAMISLQFGFAGMNIITKVSLNRGMSHYVLVVYRHAFATAAIAPFAIVLERKVRPKITFLMFMQIFVLGLLGPVIDQNLYYAGLKFTSPTYSCAISNMLPAMTFVMAAIFRMEKLNVRKVRCQAKVIGTVVTVAGAMLMTLYKGQVISFLGSKYMHHPRNYVPENNTDSGEKDWFKGSVLLVLATLSWASFFILQAMTLRKYPAQLSLTALVCALGTLQSIAVTFVMEHKPSVWTIGWDMNLLAAAYAGIISSGITYYVQGIVMQKKGPVFVTAFSPLMMIIVAIMGTFILAEKIYLGGVIGAILIVMGLYSVLWGKHKENKEKEAEITIEVLKCCSENGMRLETVVEDAETNNDIEMQKGEASRELRVAIGVPKV*

>Glyma03g27760.2   sequence type=predicted peptide   gene model=Glyma03g27760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGDGYCGSFFQRCKPYIAMISLQFGFAGMNIITKVSLNRGMSHYVLVVYRHAFATAAIAPFAIVLERKVRPKITFLMFMQIFVLGLLGPVIDQNLYYAGLKFTSPTYSCAISNMLPAMTFVMAAIFRMEKLNVRKVRCQAKVIGTVVTVAGAMLMTLYKGQVISFLGSKYMHHPRNYVPENNTDSGEKDWFKGSVLLVLATLSWASFFILQAVTLRKYPAQLSLTALVCALGTLQSIAVTFVMEHKPSVWTIGWDMNLLAAAYAGIISSGITYYVQGIVMQKKGPVFVTAFSPLMMIIVAIMGTFILAEKIYLGGVIGAILIVMGLYSVLWGKHKENKEKEAEITIEVLKCCSENGMRLETVVEDAETNNDIEMQKGEASRELRVAIGVPKV*

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