Glyma03g27750 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma03g27750): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma03g27750): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma03g27750

Feature Type:	gene_model
Chromosome:	Gm03
Start:	35515376
stop:	35520205
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g27750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48570	AT	Annotation by Michelle Graham. TAIR10: FKBP-type peptidyl-prolyl cis-trans isomerase family protein \| chr5:19690746-19693656 REVERSE LENGTH=578	SoyBase	E_val: 0	ISS
GO:0000413	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein peptidyl-prolyl isomerization	SoyBase	N/A	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0018208	GO-bp	Annotation by Michelle Graham. GO Biological Process: peptidyl-proline modification	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0070370	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular heat acclimation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003755	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
GO:0005528	GO-mf	Annotation by Michelle Graham. GO Molecular Function: FK506 binding	SoyBase	N/A	ISS
KOG0543	KOG	FKBP-type peptidyl-prolyl cis-trans isomerase	JGI		ISS
PTHR10516	Panther	FK506 BINDING PROTEIN	JGI		ISS
PTHR10516:SF66	Panther	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	JGI		ISS
PF00254	PFAM	FKBP-type peptidyl-prolyl cis-trans isomerase	JGI		ISS
PF00515	PFAM	Tetratricopeptide repeat	JGI		ISS
UniRef100_B9SJN6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptidylprolyl isomerase, putative n=1 Tax=Ricinus communis RepID=B9SJN6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI00023378A3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023378A3 related cluster n=1 Tax=unknown RepID=UPI00023378A3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g27750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g27750 not represented in the dataset	Glyma03g27750 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g27750

Paralog	Evidence	Comments
Glyma19g30630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g27750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g122100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g27750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g27750

Limit To All Plant Sequences

>Glyma03g27750.3   sequence type=transcript   gene model=Glyma03g27750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAACTGATAAGGAAATGCCACTCAACCGAAAAGCTCAAAAGGAGGGAAACCAATAACGGCTTATCCTGTTTTTAGAAACTTGAAGCTCTTTTTTTTTTTTTTTTCCTCTCTTTCTGTGATGTCAATGGCACTCTCTCAGCTAAGCCACTCTCTGGAAAATGAACTGAAAGGTGCTGAAGACTCAGAATTTCCTCTGAAGGAAATTGGAAATGAAGGTCTCACAAAACGGATTCTCAGAAAAGGAGTCACTTGGCAAACTCCATTCTCTGGAGATGAAGTGGAAGGTGAAGTTATCAAAGGTTGGGATGAAGGAGTTGCCACCATGAAGAAAGGGGAGAGAGCAATCTTCAAAATACCACCTAACTTGGCATATGGGGAAGAAGGATCCCTTCCATTGATTCCTCCCAATGCAACTCTCATTTTTGACATTGAAATGCTGTCTTGGAGTAGCATAAGGGATTTGACTGGCGATGGAGGAGTCAAGAAAAAGATAATACGGGAGGGAGAAGGATGGGCAACTCCCAGAGAAGCTGATGAGGTTCTAGTGAAATATGAAGCAAGACTAGAGAATGGGATGCTTGTCTCCAAGTCTGATCAGGGTGTGGAGTTTAATGTAAGTGATGGCTATCTATGTCCTGCCATGAGCATAGCAGTAAAGACAATGAGAAAGGGCGAGGTGGCAGAACTAGCTATGAGATTCTGTTACGGACTCAGTCAAAATTCAAGTAGAATCACTGAGCTAGAAGGTGTTCTTCCACCAGATTCAAATTTAACTAGCATCAAGCTTGAGCTGGTATCATGGAAAATTGTTGCTGATGTCACAGGAGATAAGAAGATACTGAAAAAAATTAAGAATTTGGGTGAGGGGTTTGATCGCCCTAACGAGGGATCCCAAGTGAAAGTGATATATTTGTGTAAAGGGGAAGATGGTACGATTATTGAGAGCAAAGGATCAGAGGAAGAACCTTTTGAGTTCACAACTCAAGAAGAACAGGTACCTGAGGGTCTAGAAAGAGCAATAATGACAATGAAGAAAGGAGAGCAAGCTCTGGTAACTGTGGATGCTGAATATTTGTGCGACTATAATAATTCAAAGGGAAACACAGCTAATAATAAAGTCCTTTATTATGAAGTTGAGTTGGTTGATTTCGTTAAGGAAAAACCATTTTGGAAAATGGATACACAAGAGAAAATAGAAGCTTGTGAGAGGAAGAAGCATGATGGAAATCTGCTGTTCAAGGTTGAAAATTTCAGGCACGCATCCAAGAAATATGAAAAGGCTGTAAAATACATTGAGTTTGATCACTCATTCAGTGAAGATGAGAAGTGTCGTGCTAATACCTTACATTTATCCTGTAATTTGAACAATGCTGCCTGTAAACTTAAATTGGGGGAGTACATTGAAGCTTCAAGACTATGCACAAAGGTCCTAGAACAAGACCCTTTAAATATAAAGGCTCTTTACAGAAGATGCCAAGCATACTTGAAAACATCAGACTTGGAGAAAGCTGAGGCTGACATTAAAAGAGCTTTGATTATTGATCCAAATAACAGAGACATTAAACTTGAGTACAAAGAGCTGAAACTTAAGCAAAAGGAATACAGTAGACATGAAGCTGACATCTTCAGCACAATGCTTTCAAGAATGAACTAGTTTAGAAGGTGAATTTGCGGTCCAAAGTAGAAATACCTCTGTACTGTATAACATTTTGCGTTCCAAAATATCTATTAATTTTGATTTCTAACTATACACCTCTGAACTTGCTGACGTGAGATATATATATATATATATGCTATAATAGACTGCACTGCT

Coding sequences of Glyma03g27750

Limit To All Plant Sequences

>Glyma03g27750.2   sequence type=CDS   gene model=Glyma03g27750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAATGGCACTCTCTCAGCTAAGCCACTCTCTGGAAAATGAACTGAAAGGTGCTGAAGACTCAGAATTTCCTCTGAAGGAAATTGGAAATGAAGGTCTCACAAAACGGATTCTCAGAAAAGGAGTCACTTGGCAAACTCCATTCTCTGGAGATGAAGTGGAAGTTCATTTCAATGGACAAGTTGAAAACGGAGCATCTCTTGAATCCAGTTATGATAAAGGGTCCCCGTTTCGTTTCAAACTAGGCCAATGTGAAGTTATCAAAGGTTGGGATGAAGGAGTTGCCACCATGAAGAAAGGGGAGAGAGCAATCTTCAAAATACCACCTAACTTGGCATATGGGGAAGAAGGATCCCTTCCATTGATTCCTCCCAATGCAACTCTCATTTTTGACATTGAAATGCTGTCTTGGAGTAGCATAAGGGATTTGACTGGCGATGGAGGAGTCAAGAAAAAGATAATACGGGAGGGAGAAGGATGGGCAACTCCCAGAGAAGCTGATGAGGTTCTAGTGAAATATGAAGCAAGACTAGAGAATGGGATGCTTGTCTCCAAGTCTGATCAGGGTGTGGAGTTTAATGTAAGTGATGGCTATCTATGTCCTGCCATGAGCATAGCAGTAAAGACAATGAGAAAGGGCGAGGTGGCAGAACTAGCTATGAGATTCTGTTACGGACTCAGTCAAAATTCAAGTAGAATCACTGAGCTAGAAGGTGTTCTTCCACCAGATTCAAATTTAACTAGCATCAAGCTTGAGCTGGTATCATGGAAAATTGTTGCTGATGTCACAGGAGATAAGAAGATACTGAAAAAAATTAAGAATTTGGGTGAGGGGTTTGATCGCCCTAACGAGGGATCCCAAGTGAAAGTGATATATTTGTGTAAAGGGGAAGATGGTACGATTATTGAGAGCAAAGGATCAGAGGAAGAACCTTTTGAGTTCACAACTCAAGAAGAACAGGTACCTGAGGGTCTAGAAAGAGCAATAATGACAATGAAGAAAGGAGAGCAAGCTCTGGTAACTGTGGATGCTGAATATTTGTGCGACTATAATAATTCAAAGGGAAACACAGCTAATAATAAAGTCCTTTATTATGAAGTTGAGTTGGTTGATTTCGTTAAGGAAAAACCATTTTGGAAAATGGATACACAAGAGAAAATAGAAGCTTGTGAGAGGAAGAAGCATGATGGAAATCTGCTGTTCAAGGTTGAAAATTTCAGGCACGCATCCAAGAAATATGAAAAGGCTGTAAAATACATTGAGTTTGATCACTCATTCAGTGAAGATGAGAAGTGTCGTGCTAATACCTTACATTTATCCTGTAATTTGAACAATGCTGCCTGTAAACTTAAATTGGGGGAGTACATTGAAGCTTCAAGACTATGCACAAAGGTCCTAGAACAAGACCCTTTAAATATAAAGGCTCTTTACAGAAGATGCCAAGCATACTTGAAAACATCAGACTTGGAGAAAGCTGAGGCTGACATTAAAAGAGCTTTGATTATTGATCCAAATAACAGAGACATTAAACTTGAGTACAAAGAGCTGAAACTTAAGCAAAAGGAATACAGTAGACATGAAGCTGACATCTTCAGCACAATGCTTTCAAGAATGAACTAG

>Glyma03g27750.3   sequence type=CDS   gene model=Glyma03g27750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAATGGCACTCTCTCAGCTAAGCCACTCTCTGGAAAATGAACTGAAAGGTGCTGAAGACTCAGAATTTCCTCTGAAGGAAATTGGAAATGAAGGTCTCACAAAACGGATTCTCAGAAAAGGAGTCACTTGGCAAACTCCATTCTCTGGAGATGAAGTGGAAGGTGAAGTTATCAAAGGTTGGGATGAAGGAGTTGCCACCATGAAGAAAGGGGAGAGAGCAATCTTCAAAATACCACCTAACTTGGCATATGGGGAAGAAGGATCCCTTCCATTGATTCCTCCCAATGCAACTCTCATTTTTGACATTGAAATGCTGTCTTGGAGTAGCATAAGGGATTTGACTGGCGATGGAGGAGTCAAGAAAAAGATAATACGGGAGGGAGAAGGATGGGCAACTCCCAGAGAAGCTGATGAGGTTCTAGTGAAATATGAAGCAAGACTAGAGAATGGGATGCTTGTCTCCAAGTCTGATCAGGGTGTGGAGTTTAATGTAAGTGATGGCTATCTATGTCCTGCCATGAGCATAGCAGTAAAGACAATGAGAAAGGGCGAGGTGGCAGAACTAGCTATGAGATTCTGTTACGGACTCAGTCAAAATTCAAGTAGAATCACTGAGCTAGAAGGTGTTCTTCCACCAGATTCAAATTTAACTAGCATCAAGCTTGAGCTGGTATCATGGAAAATTGTTGCTGATGTCACAGGAGATAAGAAGATACTGAAAAAAATTAAGAATTTGGGTGAGGGGTTTGATCGCCCTAACGAGGGATCCCAAGTGAAAGTGATATATTTGTGTAAAGGGGAAGATGGTACGATTATTGAGAGCAAAGGATCAGAGGAAGAACCTTTTGAGTTCACAACTCAAGAAGAACAGGTACCTGAGGGTCTAGAAAGAGCAATAATGACAATGAAGAAAGGAGAGCAAGCTCTGGTAACTGTGGATGCTGAATATTTGTGCGACTATAATAATTCAAAGGGAAACACAGCTAATAATAAAGTCCTTTATTATGAAGTTGAGTTGGTTGATTTCGTTAAGGAAAAACCATTTTGGAAAATGGATACACAAGAGAAAATAGAAGCTTGTGAGAGGAAGAAGCATGATGGAAATCTGCTGTTCAAGGTTGAAAATTTCAGGCACGCATCCAAGAAATATGAAAAGGCTGTAAAATACATTGAGTTTGATCACTCATTCAGTGAAGATGAGAAGTGTCGTGCTAATACCTTACATTTATCCTGTAATTTGAACAATGCTGCCTGTAAACTTAAATTGGGGGAGTACATTGAAGCTTCAAGACTATGCACAAAGGTCCTAGAACAAGACCCTTTAAATATAAAGGCTCTTTACAGAAGATGCCAAGCATACTTGAAAACATCAGACTTGGAGAAAGCTGAGGCTGACATTAAAAGAGCTTTGATTATTGATCCAAATAACAGAGACATTAAACTTGAGTACAAAGAGCTGAAACTTAAGCAAAAGGAATACAGTAGACATGAAGCTGACATCTTCAGCACAATGCTTTCAAGAATGAACTAG

Predicted protein sequences of Glyma03g27750

Limit To All Plant Sequences

>Glyma03g27750.2   sequence type=predicted peptide   gene model=Glyma03g27750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMALSQLSHSLENELKGAEDSEFPLKEIGNEGLTKRILRKGVTWQTPFSGDEVEVHFNGQVENGASLESSYDKGSPFRFKLGQCEVIKGWDEGVATMKKGERAIFKIPPNLAYGEEGSLPLIPPNATLIFDIEMLSWSSIRDLTGDGGVKKKIIREGEGWATPREADEVLVKYEARLENGMLVSKSDQGVEFNVSDGYLCPAMSIAVKTMRKGEVAELAMRFCYGLSQNSSRITELEGVLPPDSNLTSIKLELVSWKIVADVTGDKKILKKIKNLGEGFDRPNEGSQVKVIYLCKGEDGTIIESKGSEEEPFEFTTQEEQVPEGLERAIMTMKKGEQALVTVDAEYLCDYNNSKGNTANNKVLYYEVELVDFVKEKPFWKMDTQEKIEACERKKHDGNLLFKVENFRHASKKYEKAVKYIEFDHSFSEDEKCRANTLHLSCNLNNAACKLKLGEYIEASRLCTKVLEQDPLNIKALYRRCQAYLKTSDLEKAEADIKRALIIDPNNRDIKLEYKELKLKQKEYSRHEADIFSTMLSRMN*

>Glyma03g27750.3   sequence type=predicted peptide   gene model=Glyma03g27750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMALSQLSHSLENELKGAEDSEFPLKEIGNEGLTKRILRKGVTWQTPFSGDEVEGEVIKGWDEGVATMKKGERAIFKIPPNLAYGEEGSLPLIPPNATLIFDIEMLSWSSIRDLTGDGGVKKKIIREGEGWATPREADEVLVKYEARLENGMLVSKSDQGVEFNVSDGYLCPAMSIAVKTMRKGEVAELAMRFCYGLSQNSSRITELEGVLPPDSNLTSIKLELVSWKIVADVTGDKKILKKIKNLGEGFDRPNEGSQVKVIYLCKGEDGTIIESKGSEEEPFEFTTQEEQVPEGLERAIMTMKKGEQALVTVDAEYLCDYNNSKGNTANNKVLYYEVELVDFVKEKPFWKMDTQEKIEACERKKHDGNLLFKVENFRHASKKYEKAVKYIEFDHSFSEDEKCRANTLHLSCNLNNAACKLKLGEYIEASRLCTKVLEQDPLNIKALYRRCQAYLKTSDLEKAEADIKRALIIDPNNRDIKLEYKELKLKQKEYSRHEADIFSTMLSRMN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain