Glyma03g27740 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g27740

Feature Type:	gene_model
Chromosome:	Gm03
Start:	35505245
stop:	35509942
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g27740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40890	AT	Annotation by Michelle Graham. TAIR10: cytochrome P450, family 98, subfamily A, polypeptide 3 \| chr2:17058291-17060532 REVERSE LENGTH=508	SoyBase	E_val: 0	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009699	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid biosynthetic process	SoyBase	N/A	ISS
GO:0009805	GO-bp	Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process	SoyBase	N/A	ISS
GO:0009809	GO-bp	Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process	SoyBase	N/A	ISS
GO:0009813	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0043231	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular membrane-bounded organelle	SoyBase	N/A	ISS
GO:0004497	GO-mf	Annotation by Michelle Graham. GO Molecular Function: monooxygenase activity	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016705	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
GO:0046409	GO-mf	Annotation by Michelle Graham. GO Molecular Function: p-coumarate 3-hydroxylase activity	SoyBase	N/A	ISS
KOG0156	KOG	Cytochrome P450 CYP2 subfamily	JGI		ISS
PTHR24298	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24298:SF44	Panther		JGI		ISS
PF00067	PFAM	Cytochrome P450	JGI		ISS
UniRef100_I1JN04	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JN04_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O48922	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450 98A2 n=1 Tax=Glycine max RepID=C98A2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g27740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g27740

Paralog	Evidence	Comments
Glyma19g30600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g27740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g122000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g27740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g27740

Limit To All Plant Sequences

>Glyma03g27740.2   sequence type=transcript   gene model=Glyma03g27740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGAAACGTTTCAATATACCACATAATCCAACTTTCACCAACTCTCTCTCTCTCTCTCTCTCATTCTCTAATAGTAGTATATATCAATTCAACCTGCCTCCAACTCTTCCAGGAACCACCACAAAACATTCTCATCATTCACCCAACAAAATGGCTCTGCTTCTGATAGTACCCATTTCACTGGTAACCCTCTGGCTCGGTTACACCCTATACCAGCGGCTACGCTTCAAGCTCCCTCCTGGCCCACGGCCCTGGCCGGTAGTCGGTAACCTCTACGACATAAAACCCGTCCGGTTCCGGTGCTTCGCTGAGTGGGCGCAGTCTTACGGCCCTATCATATCGGTCTGGTTCGGTTCGACCCTAAACGTCATCGTTTCAAACTCGGAGTTGGCCAAGGAGGTTCTGAAGGAGCACGATCAGCAGCTGGCGGACCGGCACCGGAGCCGGTCGGCGGCGAAGTTCAGCCGCGACGGGAAGGATCTCATTTGGGCCGATTATGGGCCGCACTACGTGAAGGTGAGGAAGGTTTGCACGCTCGAGCTTTTCACGCCGAAGCGCCTCGAGTCCCTCAGGCCCATTAGGGAGGACGAGGTCACCACCATGGTTGAGTCCGTTTACAATCACTGCACCACCACTGGAAATTTAGGGAAAGCAATATTGGTGAGGAAGCACTTGGGGTCTGTGGCATTCAACAACATCACCAGGTTGGCATTTGGAAAAAGATTTGTGAACTCAGAAGGTGTTATGGATGAGCAAGGAGTAGAATTCAAGGCCATTGTGGAAAATGGGTTAAAGCTAGGAGCATCTCTAGCCATGGCAGAACACATCCCTTGGCTGCGCTGGATGTTCCCACTGGAAGAAGGAGCTTTTGCCAAGCATGGAGCCCGCCGCGACCGACTCACCAGAGCCATCATGACGGAGCACACTGAAGCACGCAAGAAATCTGGTGGTGCCAAGCAACATTTTGTTGATGCCCTCCTCACATTGCAAGACAAGTATGACCTTAGTGAAGACACCATCATTGGTCTCCTTTGGGATATGATCACAGCAGGGATGGACACAACTGCAATTTCAGTTGAGTGGGCCATGGCTGAATTGATAAGAAACCCAAGGGTGCAACAAAAGGTCCAAGAAGAGCTAGACAGGGTAATTGGGCTTGAAAGGGTGATGACTGAAGCTGACTTCTCAAGCCTGCCTTATCTACAATGTGTGATCAAGGAAGCAATGAGGCTTCACCCACCAACCCCACTAATGCTCCCACACCGTGCCAATGCCAATGTCAAAGTTGGAGTTCCGACCCGAGAGGTTCCTTGAGGAGGATGTGGACATGAAGGGCCATGACTTTAGGCTACTTCCATTCGGGGCGGGTCGCCGGGTATGCCCGGGTGCCCAACTTGGTATCAACTTGGTAACATCCATGTTGGGCCACCTCTTGCACCATTTTTGTTGGACCCCACCTGAAGGAATGAAGCCTGAGGAAATTGACATGGGAGAGAATCCAGGGTTAGTCACATACATGAGGACTCCAATACAAGCTTTGGCTTCTCCTAGGCTCCCCTCACATTTGTACAAACGTGTGCCTGCTGAGATCTAATCTTTCTTTTTCTTTTCCTTGGATTACTCTTTGTTGCATTAAGAAAATTGCCTTGTGTCTATGTAACTACATTTGAAATGGCAATTCAAGGAACTAAGGAAAAACCCATAGCGAGTTTGGCTTCTCCTCTTCAGATTTTGGATTGAAATTCCTGTTTAAGATTAATTAAATAAGTTACATGAGAAGGGAGTTTACCGAAAGTAACTCTAAGCATCCAATTTTTGGTGAAAGGAAGCTAATGGTTCACCTTATGG

Coding sequences of Glyma03g27740

Limit To All Plant Sequences

>Glyma03g27740.1   sequence type=CDS   gene model=Glyma03g27740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTGCTTCTGATAGTACCCATTTCACTGGTAACCCTCTGGCTCGGTTACACCCTATACCAGCGGCTACGCTTCAAGCTCCCTCCTGGCCCACGGCCCTGGCCGGTAGTCGGTAACCTCTACGACATAAAACCCGTCCGGTTCCGGTGCTTCGCTGAGTGGGCGCAGTCTTACGGCCCTATCATATCGGTCTGGTTCGGTTCGACCCTAAACGTCATCGTTTCAAACTCGGAGTTGGCCAAGGAGGTTCTGAAGGAGCACGATCAGCAGCTGGCGGACCGGCACCGGAGCCGGTCGGCGGCGAAGTTCAGCCGCGACGGGAAGGATCTCATTTGGGCCGATTATGGGCCGCACTACGTGAAGGTGAGGAAGGTTTGCACGCTCGAGCTTTTCACGCCGAAGCGCCTCGAGTCCCTCAGGCCCATTAGGGAGGACGAGGTCACCACCATGGTTGAGTCCGTTTACAATCACTGCACCACCACTGGAAATTTAGGGAAAGCAATATTGGTGAGGAAGCACTTGGGGTCTGTGGCATTCAACAACATCACCAGGTTGGCATTTGGAAAAAGATTTGTGAACTCAGAAGGTGTTATGGATGAGCAAGGAGTAGAATTCAAGGCCATTGTGGAAAATGGGTTAAAGCTAGGAGCATCTCTAGCCATGGCAGAACACATCCCTTGGCTGCGCTGGATGTTCCCACTGGAAGAAGGAGCTTTTGCCAAGCATGGAGCCCGCCGCGACCGACTCACCAGAGCCATCATGACGGAGCACACTGAAGCACGCAAGAAATCTGGTGGTGCCAAGCAACATTTTGTTGATGCCCTCCTCACATTGCAAGACAAGTATGACCTTAGTGAAGACACCATCATTGGTCTCCTTTGGGATATGATCACAGCAGGGATGGACACAACTGCAATTTCAGTTGAGTGGGCCATGGCTGAATTGATAAGAAACCCAAGGGTGCAACAAAAGGTCCAAGAAGAGCTAGACAGGGTAATTGGGCTTGAAAGGGTGATGACTGAAGCTGACTTCTCAAGCCTGCCTTATCTACAATGTGTGATCAAGGAAGCAATGAGGCTTCACCCACCAACCCCACTAATGCTCCCACACCGTGCCAATGCCAATGTCAAAGTTGGAGGCTATGATATTCCAAAAGGGTCCAATGTGCATGTGAATGTGTGGGCCGTGGCCCGTGACCCGGCAGTGTGGAAGGATCCGTTGGAGTTCCGACCCGAGAGGTTCCTTGAGGAGGATGTGGACATGAAGGGCCATGACTTTAGGCTACTTCCATTCGGGGCGGGTCGCCGGGTATGCCCGGGTGCCCAACTTGGTATCAACTTGGTAACATCCATGTTGGGCCACCTCTTGCACCATTTTTGTTGGACCCCACCTGAAGGAATGAAGCCTGAGGAAATTGACATGGGAGAGAATCCAGGGTTAGTCACATACATGAGGACTCCAATACAAGCTTTGGCTTCTCCTAGGCTCCCCTCACATTTGTACAAACGTGTGCCTGCTGAGATCTAA

>Glyma03g27740.2   sequence type=CDS   gene model=Glyma03g27740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTGCTTCTGATAGTACCCATTTCACTGGTAACCCTCTGGCTCGGTTACACCCTATACCAGCGGCTACGCTTCAAGCTCCCTCCTGGCCCACGGCCCTGGCCGGTAGTCGGTAACCTCTACGACATAAAACCCGTCCGGTTCCGGTGCTTCGCTGAGTGGGCGCAGTCTTACGGCCCTATCATATCGGTCTGGTTCGGTTCGACCCTAAACGTCATCGTTTCAAACTCGGAGTTGGCCAAGGAGGTTCTGAAGGAGCACGATCAGCAGCTGGCGGACCGGCACCGGAGCCGGTCGGCGGCGAAGTTCAGCCGCGACGGGAAGGATCTCATTTGGGCCGATTATGGGCCGCACTACGTGAAGGTGAGGAAGGTTTGCACGCTCGAGCTTTTCACGCCGAAGCGCCTCGAGTCCCTCAGGCCCATTAGGGAGGACGAGGTCACCACCATGGTTGAGTCCGTTTACAATCACTGCACCACCACTGGAAATTTAGGGAAAGCAATATTGGTGAGGAAGCACTTGGGGTCTGTGGCATTCAACAACATCACCAGGTTGGCATTTGGAAAAAGATTTGTGAACTCAGAAGGTGTTATGGATGAGCAAGGAGTAGAATTCAAGGCCATTGTGGAAAATGGGTTAAAGCTAGGAGCATCTCTAGCCATGGCAGAACACATCCCTTGGCTGCGCTGGATGTTCCCACTGGAAGAAGGAGCTTTTGCCAAGCATGGAGCCCGCCGCGACCGACTCACCAGAGCCATCATGACGGAGCACACTGAAGCACGCAAGAAATCTGGTGGTGCCAAGCAACATTTTGTTGATGCCCTCCTCACATTGCAAGACAAGTATGACCTTAGTGAAGACACCATCATTGGTCTCCTTTGGGATATGATCACAGCAGGGATGGACACAACTGCAATTTCAGTTGAGTGGGCCATGGCTGAATTGATAAGAAACCCAAGGGTGCAACAAAAGGTCCAAGAAGAGCTAGACAGGGTAATTGGGCTTGAAAGGGTGATGACTGAAGCTGACTTCTCAAGCCTGCCTTATCTACAATGTGTGATCAAGGAAGCAATGAGGCTTCACCCACCAACCCCACTAATGCTCCCACACCGTGCCAATGCCAATGTCAAAGTTGGAGTTCCGACCCGAGAGGTTCCTTGA

Predicted protein sequences of Glyma03g27740

Limit To All Plant Sequences

>Glyma03g27740.1   sequence type=predicted peptide   gene model=Glyma03g27740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALLLIVPISLVTLWLGYTLYQRLRFKLPPGPRPWPVVGNLYDIKPVRFRCFAEWAQSYGPIISVWFGSTLNVIVSNSELAKEVLKEHDQQLADRHRSRSAAKFSRDGKDLIWADYGPHYVKVRKVCTLELFTPKRLESLRPIREDEVTTMVESVYNHCTTTGNLGKAILVRKHLGSVAFNNITRLAFGKRFVNSEGVMDEQGVEFKAIVENGLKLGASLAMAEHIPWLRWMFPLEEGAFAKHGARRDRLTRAIMTEHTEARKKSGGAKQHFVDALLTLQDKYDLSEDTIIGLLWDMITAGMDTTAISVEWAMAELIRNPRVQQKVQEELDRVIGLERVMTEADFSSLPYLQCVIKEAMRLHPPTPLMLPHRANANVKVGGYDIPKGSNVHVNVWAVARDPAVWKDPLEFRPERFLEEDVDMKGHDFRLLPFGAGRRVCPGAQLGINLVTSMLGHLLHHFCWTPPEGMKPEEIDMGENPGLVTYMRTPIQALASPRLPSHLYKRVPAEI*

>Glyma03g27740.2   sequence type=predicted peptide   gene model=Glyma03g27740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALLLIVPISLVTLWLGYTLYQRLRFKLPPGPRPWPVVGNLYDIKPVRFRCFAEWAQSYGPIISVWFGSTLNVIVSNSELAKEVLKEHDQQLADRHRSRSAAKFSRDGKDLIWADYGPHYVKVRKVCTLELFTPKRLESLRPIREDEVTTMVESVYNHCTTTGNLGKAILVRKHLGSVAFNNITRLAFGKRFVNSEGVMDEQGVEFKAIVENGLKLGASLAMAEHIPWLRWMFPLEEGAFAKHGARRDRLTRAIMTEHTEARKKSGGAKQHFVDALLTLQDKYDLSEDTIIGLLWDMITAGMDTTAISVEWAMAELIRNPRVQQKVQEELDRVIGLERVMTEADFSSLPYLQCVIKEAMRLHPPTPLMLPHRANANVKVGVPTREVP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain