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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G40890 | AT | Annotation by Michelle Graham. TAIR10: cytochrome P450, family 98, subfamily A, polypeptide 3 | chr2:17058291-17060532 REVERSE LENGTH=508 | SoyBase | E_val: 0 | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009699 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phenylpropanoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009805 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process | SoyBase | N/A | ISS |
| GO:0009809 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process | SoyBase | N/A | ISS |
| GO:0009813 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009963 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0043231 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular membrane-bounded organelle | SoyBase | N/A | ISS |
| GO:0004497 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: monooxygenase activity | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016705 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| GO:0046409 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: p-coumarate 3-hydroxylase activity | SoyBase | N/A | ISS |
| KOG0156 | KOG | Cytochrome P450 CYP2 subfamily | JGI | ISS | |
| PTHR24298 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24298:SF44 | Panther | JGI | ISS | ||
| PF00067 | PFAM | Cytochrome P450 | JGI | ISS | |
| UniRef100_I1JN04 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JN04_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_O48922 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450 98A2 n=1 Tax=Glycine max RepID=C98A2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g27740 not represented in the dataset |
Glyma03g27740 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g30600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g122000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g27740.2 sequence type=transcript gene model=Glyma03g27740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGAAACGTTTCAATATACCACATAATCCAACTTTCACCAACTCTCTCTCTCTCTCTCTCTCATTCTCTAATAGTAGTATATATCAATTCAACCTGCCTCCAACTCTTCCAGGAACCACCACAAAACATTCTCATCATTCACCCAACAAAATGGCTCTGCTTCTGATAGTACCCATTTCACTGGTAACCCTCTGGCTCGGTTACACCCTATACCAGCGGCTACGCTTCAAGCTCCCTCCTGGCCCACGGCCCTGGCCGGTAGTCGGTAACCTCTACGACATAAAACCCGTCCGGTTCCGGTGCTTCGCTGAGTGGGCGCAGTCTTACGGCCCTATCATATCGGTCTGGTTCGGTTCGACCCTAAACGTCATCGTTTCAAACTCGGAGTTGGCCAAGGAGGTTCTGAAGGAGCACGATCAGCAGCTGGCGGACCGGCACCGGAGCCGGTCGGCGGCGAAGTTCAGCCGCGACGGGAAGGATCTCATTTGGGCCGATTATGGGCCGCACTACGTGAAGGTGAGGAAGGTTTGCACGCTCGAGCTTTTCACGCCGAAGCGCCTCGAGTCCCTCAGGCCCATTAGGGAGGACGAGGTCACCACCATGGTTGAGTCCGTTTACAATCACTGCACCACCACTGGAAATTTAGGGAAAGCAATATTGGTGAGGAAGCACTTGGGGTCTGTGGCATTCAACAACATCACCAGGTTGGCATTTGGAAAAAGATTTGTGAACTCAGAAGGTGTTATGGATGAGCAAGGAGTAGAATTCAAGGCCATTGTGGAAAATGGGTTAAAGCTAGGAGCATCTCTAGCCATGGCAGAACACATCCCTTGGCTGCGCTGGATGTTCCCACTGGAAGAAGGAGCTTTTGCCAAGCATGGAGCCCGCCGCGACCGACTCACCAGAGCCATCATGACGGAGCACACTGAAGCACGCAAGAAATCTGGTGGTGCCAAGCAACATTTTGTTGATGCCCTCCTCACATTGCAAGACAAGTATGACCTTAGTGAAGACACCATCATTGGTCTCCTTTGGGATATGATCACAGCAGGGATGGACACAACTGCAATTTCAGTTGAGTGGGCCATGGCTGAATTGATAAGAAACCCAAGGGTGCAACAAAAGGTCCAAGAAGAGCTAGACAGGGTAATTGGGCTTGAAAGGGTGATGACTGAAGCTGACTTCTCAAGCCTGCCTTATCTACAATGTGTGATCAAGGAAGCAATGAGGCTTCACCCACCAACCCCACTAATGCTCCCACACCGTGCCAATGCCAATGTCAAAGTTGGAGTTCCGACCCGAGAGGTTCCTTGAGGAGGATGTGGACATGAAGGGCCATGACTTTAGGCTACTTCCATTCGGGGCGGGTCGCCGGGTATGCCCGGGTGCCCAACTTGGTATCAACTTGGTAACATCCATGTTGGGCCACCTCTTGCACCATTTTTGTTGGACCCCACCTGAAGGAATGAAGCCTGAGGAAATTGACATGGGAGAGAATCCAGGGTTAGTCACATACATGAGGACTCCAATACAAGCTTTGGCTTCTCCTAGGCTCCCCTCACATTTGTACAAACGTGTGCCTGCTGAGATCTAATCTTTCTTTTTCTTTTCCTTGGATTACTCTTTGTTGCATTAAGAAAATTGCCTTGTGTCTATGTAACTACATTTGAAATGGCAATTCAAGGAACTAAGGAAAAACCCATAGCGAGTTTGGCTTCTCCTCTTCAGATTTTGGATTGAAATTCCTGTTTAAGATTAATTAAATAAGTTACATGAGAAGGGAGTTTACCGAAAGTAACTCTAAGCATCCAATTTTTGGTGAAAGGAAGCTAATGGTTCACCTTATGG
>Glyma03g27740.1 sequence type=CDS gene model=Glyma03g27740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCTGCTTCTGATAGTACCCATTTCACTGGTAACCCTCTGGCTCGGTTACACCCTATACCAGCGGCTACGCTTCAAGCTCCCTCCTGGCCCACGGCCCTGGCCGGTAGTCGGTAACCTCTACGACATAAAACCCGTCCGGTTCCGGTGCTTCGCTGAGTGGGCGCAGTCTTACGGCCCTATCATATCGGTCTGGTTCGGTTCGACCCTAAACGTCATCGTTTCAAACTCGGAGTTGGCCAAGGAGGTTCTGAAGGAGCACGATCAGCAGCTGGCGGACCGGCACCGGAGCCGGTCGGCGGCGAAGTTCAGCCGCGACGGGAAGGATCTCATTTGGGCCGATTATGGGCCGCACTACGTGAAGGTGAGGAAGGTTTGCACGCTCGAGCTTTTCACGCCGAAGCGCCTCGAGTCCCTCAGGCCCATTAGGGAGGACGAGGTCACCACCATGGTTGAGTCCGTTTACAATCACTGCACCACCACTGGAAATTTAGGGAAAGCAATATTGGTGAGGAAGCACTTGGGGTCTGTGGCATTCAACAACATCACCAGGTTGGCATTTGGAAAAAGATTTGTGAACTCAGAAGGTGTTATGGATGAGCAAGGAGTAGAATTCAAGGCCATTGTGGAAAATGGGTTAAAGCTAGGAGCATCTCTAGCCATGGCAGAACACATCCCTTGGCTGCGCTGGATGTTCCCACTGGAAGAAGGAGCTTTTGCCAAGCATGGAGCCCGCCGCGACCGACTCACCAGAGCCATCATGACGGAGCACACTGAAGCACGCAAGAAATCTGGTGGTGCCAAGCAACATTTTGTTGATGCCCTCCTCACATTGCAAGACAAGTATGACCTTAGTGAAGACACCATCATTGGTCTCCTTTGGGATATGATCACAGCAGGGATGGACACAACTGCAATTTCAGTTGAGTGGGCCATGGCTGAATTGATAAGAAACCCAAGGGTGCAACAAAAGGTCCAAGAAGAGCTAGACAGGGTAATTGGGCTTGAAAGGGTGATGACTGAAGCTGACTTCTCAAGCCTGCCTTATCTACAATGTGTGATCAAGGAAGCAATGAGGCTTCACCCACCAACCCCACTAATGCTCCCACACCGTGCCAATGCCAATGTCAAAGTTGGAGGCTATGATATTCCAAAAGGGTCCAATGTGCATGTGAATGTGTGGGCCGTGGCCCGTGACCCGGCAGTGTGGAAGGATCCGTTGGAGTTCCGACCCGAGAGGTTCCTTGAGGAGGATGTGGACATGAAGGGCCATGACTTTAGGCTACTTCCATTCGGGGCGGGTCGCCGGGTATGCCCGGGTGCCCAACTTGGTATCAACTTGGTAACATCCATGTTGGGCCACCTCTTGCACCATTTTTGTTGGACCCCACCTGAAGGAATGAAGCCTGAGGAAATTGACATGGGAGAGAATCCAGGGTTAGTCACATACATGAGGACTCCAATACAAGCTTTGGCTTCTCCTAGGCTCCCCTCACATTTGTACAAACGTGTGCCTGCTGAGATCTAA >Glyma03g27740.2 sequence type=CDS gene model=Glyma03g27740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCTGCTTCTGATAGTACCCATTTCACTGGTAACCCTCTGGCTCGGTTACACCCTATACCAGCGGCTACGCTTCAAGCTCCCTCCTGGCCCACGGCCCTGGCCGGTAGTCGGTAACCTCTACGACATAAAACCCGTCCGGTTCCGGTGCTTCGCTGAGTGGGCGCAGTCTTACGGCCCTATCATATCGGTCTGGTTCGGTTCGACCCTAAACGTCATCGTTTCAAACTCGGAGTTGGCCAAGGAGGTTCTGAAGGAGCACGATCAGCAGCTGGCGGACCGGCACCGGAGCCGGTCGGCGGCGAAGTTCAGCCGCGACGGGAAGGATCTCATTTGGGCCGATTATGGGCCGCACTACGTGAAGGTGAGGAAGGTTTGCACGCTCGAGCTTTTCACGCCGAAGCGCCTCGAGTCCCTCAGGCCCATTAGGGAGGACGAGGTCACCACCATGGTTGAGTCCGTTTACAATCACTGCACCACCACTGGAAATTTAGGGAAAGCAATATTGGTGAGGAAGCACTTGGGGTCTGTGGCATTCAACAACATCACCAGGTTGGCATTTGGAAAAAGATTTGTGAACTCAGAAGGTGTTATGGATGAGCAAGGAGTAGAATTCAAGGCCATTGTGGAAAATGGGTTAAAGCTAGGAGCATCTCTAGCCATGGCAGAACACATCCCTTGGCTGCGCTGGATGTTCCCACTGGAAGAAGGAGCTTTTGCCAAGCATGGAGCCCGCCGCGACCGACTCACCAGAGCCATCATGACGGAGCACACTGAAGCACGCAAGAAATCTGGTGGTGCCAAGCAACATTTTGTTGATGCCCTCCTCACATTGCAAGACAAGTATGACCTTAGTGAAGACACCATCATTGGTCTCCTTTGGGATATGATCACAGCAGGGATGGACACAACTGCAATTTCAGTTGAGTGGGCCATGGCTGAATTGATAAGAAACCCAAGGGTGCAACAAAAGGTCCAAGAAGAGCTAGACAGGGTAATTGGGCTTGAAAGGGTGATGACTGAAGCTGACTTCTCAAGCCTGCCTTATCTACAATGTGTGATCAAGGAAGCAATGAGGCTTCACCCACCAACCCCACTAATGCTCCCACACCGTGCCAATGCCAATGTCAAAGTTGGAGTTCCGACCCGAGAGGTTCCTTGA
>Glyma03g27740.1 sequence type=predicted peptide gene model=Glyma03g27740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALLLIVPISLVTLWLGYTLYQRLRFKLPPGPRPWPVVGNLYDIKPVRFRCFAEWAQSYGPIISVWFGSTLNVIVSNSELAKEVLKEHDQQLADRHRSRSAAKFSRDGKDLIWADYGPHYVKVRKVCTLELFTPKRLESLRPIREDEVTTMVESVYNHCTTTGNLGKAILVRKHLGSVAFNNITRLAFGKRFVNSEGVMDEQGVEFKAIVENGLKLGASLAMAEHIPWLRWMFPLEEGAFAKHGARRDRLTRAIMTEHTEARKKSGGAKQHFVDALLTLQDKYDLSEDTIIGLLWDMITAGMDTTAISVEWAMAELIRNPRVQQKVQEELDRVIGLERVMTEADFSSLPYLQCVIKEAMRLHPPTPLMLPHRANANVKVGGYDIPKGSNVHVNVWAVARDPAVWKDPLEFRPERFLEEDVDMKGHDFRLLPFGAGRRVCPGAQLGINLVTSMLGHLLHHFCWTPPEGMKPEEIDMGENPGLVTYMRTPIQALASPRLPSHLYKRVPAEI* >Glyma03g27740.2 sequence type=predicted peptide gene model=Glyma03g27740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALLLIVPISLVTLWLGYTLYQRLRFKLPPGPRPWPVVGNLYDIKPVRFRCFAEWAQSYGPIISVWFGSTLNVIVSNSELAKEVLKEHDQQLADRHRSRSAAKFSRDGKDLIWADYGPHYVKVRKVCTLELFTPKRLESLRPIREDEVTTMVESVYNHCTTTGNLGKAILVRKHLGSVAFNNITRLAFGKRFVNSEGVMDEQGVEFKAIVENGLKLGASLAMAEHIPWLRWMFPLEEGAFAKHGARRDRLTRAIMTEHTEARKKSGGAKQHFVDALLTLQDKYDLSEDTIIGLLWDMITAGMDTTAISVEWAMAELIRNPRVQQKVQEELDRVIGLERVMTEADFSSLPYLQCVIKEAMRLHPPTPLMLPHRANANVKVGVPTREVP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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