SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G52580 | AT | Annotation by Michelle Graham. TAIR10: RabGAP/TBC domain-containing protein | chr5:21338052-21342848 FORWARD LENGTH=673 | SoyBase | E_val: 3.00E-28 | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| UniRef100_G7JE75 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: TBC1 domain family member n=1 Tax=Medicago truncatula RepID=G7JE75_MEDTR | SoyBase | E_val: 2.00E-58 | ISS |
| UniRef100_UPI00023378A2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023378A2 related cluster n=1 Tax=unknown RepID=UPI00023378A2 | SoyBase | E_val: 1.00E-99 | ISS |
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Glyma03g27721 not represented in the dataset |
Glyma03g27721 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g27721.2 sequence type=transcript gene model=Glyma03g27721 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTATTTTTAATATTTGACTACCTCTGCACCCTGTATCGTGTCTGCTCCCTGTATTCTCACTCTCCCTCCCACGTACTCAAGGCCACAGACTTGGCCTTCACCCACTTGTTTACTTTGCCGTCGCCGTCCCTCCCCCGCATAAAATCTGAAGAAGATGCCAACGTATTCCTTGTGAGTGATTTTCTGAATACACCGCAGATGCCCAGGGCTGTTCCCCTTGCATGTGGACCTTCAAATACATCAGTTGATGAATCCATTTTGATTGAGAAGCAAGAAAGGGTTGATAATGGTGCCAATGATGGAAGATTCAGTGTTAATCAGTTCCACGGGAGATCACGACATAAAGTAGATCCTGCTCGAGACCTCTCTATTCAAGTTCTAGAGAAGTTTTCTCTTGTCACAAGATTTGCCCGTGAAACAACTTCACAACTTTTTGGAGAAAACCAAAGTAATGGATTTAGTCCCATTGACAGGAGGACCCATATCCAGACTAACCTTGATCATCCTAAGTCTTCCAATGTTGAGGAAAATACCTTTGTTGAAAGTCCTGTTGTCTTGGATTCTCAGGAGTTTTATTGGCTACTAGCAAGGTAGTCAAACAAAACGCAAGGTGTTTTAACTCGTTGAGGCAATAGGCATCAATAAGTGCTTCATTGAAGAGAGACATTAATATTAGAAAAGGAGAAAACATTCATGTTTGATAATTTATCGTTAGTATGGGGAAAACCAAGGCAACCTCCTTTGGGTTCTGAAGAGGTATGAGCTGTATATTTTATAAACGATATTGTTTCTTATATAGGTTTCCAAAATCATCATATTGTATACATGAATTTC
>Glyma03g27721.1 sequence type=CDS gene model=Glyma03g27721 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTATTTTTAATATTTGACTACCTCTGCACCCTGTATCGTGTCTGCTCCCTGTATTCTCACTCTCCCTCCCACGTACTCAAGGCCACAGACTTGGCCTTCACCCACTTGTTTACTTTGCCGTCGCCGTCCCTCCCCCGCATAAAATCTGAAGAAGATGCCAACGTATTCCTTGTGAGTGATTTTCTGAATACACCGCAGATGCCCAGGGCTGTTCCCCTTGCATGTGGACCTTCAAATACATCAGTTGATGAATCCATTTTGATTGAGAAGCAAGAAAGGGTTGATAATGGTGCCAATGATGGAAGATTCAGTGTTAATCAGTTCCACGGGAGATCACGACATAAAGTAGATCCTGCTCGAGACCTCTCTATTCAAGTTCTAGAGAAGTTTTCTCTTGTCACAAGATTTGCCCGTGAAACAACTTCACAACTTTTTGGAGAAAACCAAAGTAATGGATTTAGTCCCATTGACAGGAGGACCCATATCCAGACTAACCTTGATCATCCTAAGTCTTCCAATGTTGAGGAAAATACCTTTGTTGAAAGTCCTGTTGTCTTGGATTCTCAGGAGTTTGATAATTTATCGTTAGTATGGGGAAAACCAAGGCAACCTCCTTTGGGTTCTGAAGAGGTATGA >Glyma03g27721.2 sequence type=CDS gene model=Glyma03g27721 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTATTTTTAATATTTGACTACCTCTGCACCCTGTATCGTGTCTGCTCCCTGTATTCTCACTCTCCCTCCCACGTACTCAAGGCCACAGACTTGGCCTTCACCCACTTGTTTACTTTGCCGTCGCCGTCCCTCCCCCGCATAAAATCTGAAGAAGATGCCAACGTATTCCTTGTGAGTGATTTTCTGAATACACCGCAGATGCCCAGGGCTGTTCCCCTTGCATGTGGACCTTCAAATACATCAGTTGATGAATCCATTTTGATTGAGAAGCAAGAAAGGGTTGATAATGGTGCCAATGATGGAAGATTCAGTGTTAATCAGTTCCACGGGAGATCACGACATAAAGTAGATCCTGCTCGAGACCTCTCTATTCAAGTTCTAGAGAAGTTTTCTCTTGTCACAAGATTTGCCCGTGAAACAACTTCACAACTTTTTGGAGAAAACCAAAGTAATGGATTTAGTCCCATTGACAGGAGGACCCATATCCAGACTAACCTTGATCATCCTAAGTCTTCCAATGTTGAGGAAAATACCTTTGTTGAAAGTCCTGTTGTCTTGGATTCTCAGGAGTTTTATTGGCTACTAGCAAGGTAG
>Glyma03g27721.1 sequence type=predicted peptide gene model=Glyma03g27721 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLFLIFDYLCTLYRVCSLYSHSPSHVLKATDLAFTHLFTLPSPSLPRIKSEEDANVFLVSDFLNTPQMPRAVPLACGPSNTSVDESILIEKQERVDNGANDGRFSVNQFHGRSRHKVDPARDLSIQVLEKFSLVTRFARETTSQLFGENQSNGFSPIDRRTHIQTNLDHPKSSNVEENTFVESPVVLDSQEFDNLSLVWGKPRQPPLGSEEV* >Glyma03g27721.2 sequence type=predicted peptide gene model=Glyma03g27721 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLFLIFDYLCTLYRVCSLYSHSPSHVLKATDLAFTHLFTLPSPSLPRIKSEEDANVFLVSDFLNTPQMPRAVPLACGPSNTSVDESILIEKQERVDNGANDGRFSVNQFHGRSRHKVDPARDLSIQVLEKFSLVTRFARETTSQLFGENQSNGFSPIDRRTHIQTNLDHPKSSNVEENTFVESPVVLDSQEFYWLLAR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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