SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G78955 | AT | Annotation by Michelle Graham. TAIR10: camelliol C synthase 1 | chr1:29689153-29694255 REVERSE LENGTH=769 | SoyBase | E_val: 0 | ISS |
| GO:0042300 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: beta-amyrin synthase activity | SoyBase | N/A | ISS |
| GO:0090438 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: camelliol C synthase activity | SoyBase | N/A | ISS |
| KOG0497 | KOG | Oxidosqualene-lanosterol cyclase and related proteins | JGI | ISS | |
| PTHR11764 | Panther | SQUALENE CYCLASES-RELATED | JGI | ISS | |
| PTHR11764:SF3 | Panther | CYCLOARTENOL SYNTHASE-RELATED | JGI | ISS | |
| PF00432 | PFAM | Prenyltransferase and squalene oxidase repeat | JGI | ISS | |
| UniRef100_Q9MB42 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beta-amyrin synthase n=1 Tax=Glycyrrhiza glabra RepID=BAMS_GLYGL | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9MB42 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Beta-amyrin synthase n=1 Tax=Glycyrrhiza glabra RepID=BAMS_GLYGL | SoyBase | E_val: 0 | ISS |
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Glyma03g27661 not represented in the dataset |
Glyma03g27661 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g121500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g27661.1 sequence type=CDS gene model=Glyma03g27661 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTACATTACAGGACATCTTGATTCAGTATTCCCCGAAGAGTATAAAAAAGAAATTCTTCGTTACATGTACTATCACCAGAATGAAGATGGAGGATGGGGACTACACATTGAGGGTCACAGCAACATGTTTTGTACTGCACTAAACTATATATGTATGCGAGTTCTTGGAGAAGGCCCTAATGGAGGTCATGACAATGCTTGTGCTAGAGCAAGAAAATGGATTCATGATCATGGTGGTGTAACACACATACCATCATGGGGAAAAACTTGGCTTTCGATTCTTGGGGTATATGATTGGTATGGAAGCAAACCAGTGCCCCCAGAGTTTTGGGTTCTTCCTTCATTTCTTCCTATGCATCCATCTAAAATCTGGTGTTACTGTCGATTGACATATCTACCTATGTCTTACTTATATGGGAAGAGGTTTGTGGGTCCAATCACACCACTTATCTTACAATTGAGAGAAGAGCTCTTTACTCAACCGTATGAAAAGGTTAATTGGAAGAAAGCACGTAACCAATGTGCAAAGGAAGATCGTTATCATCCTCATTCTTTGATACAAGACCTGGTATGGGATAGTTTATACATATTTATTGAGCCACTACTTACTCGGTGGCCTTTCAACAAGCTAGTAAGAGAAAAGGCCCTTCAGGTAACAATGAAGCATATCCTTTACGAAGATGAAAATAGTCGATACATAACCATTGGGTGTGTGGAAAAGGCTTTATATATGCTTGCTTGTTGGGTGGAAGATCCAAATGGAGATGCTTTCAAGAAGCATCTTGCAAGGGTTCCAGATTACTTATGGGTTTCTGAAGATGGAATGGCCATGCAGAGTTTTGGTAGCCAAGGATGGGATGCTAGTTTGGTTATTCAAGCTTTGCTTGCCACTAACCTAATGGAGGAAATTGGTCCTACACTTGCAAAAGCACATGATTTCATCAAGAAGACTCAGGTGAAGGATGACCCTTTAGGAGATTTTAAGAGTATGTATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGATCAGGGATGGCAAGTTTCTGATTGCACGGCAGAAACTTTGAATTGTTGTCTACTTCTATCCATATTGCCATCAGAGATTGTAGGAGAAAAGATGGAACCTCAAAGGTTATATGATTCAGTCAATATCCTATTGTCACTTCAAAGTAGAAAAGGTGGTTTAGCAGCATGGGAACCATCAGGAACTCAAGAATGGTTGGAAATACTCAATCCCACAGAATTTTTAGGGAACATTGTGGTTGAACATGATTATGCTGAGTGCACTGGATCTGCTATTCAAGCTTTAGTTTTGTTTAAGAAGCTATATCCAAGGCATAGGGAGAAAGAGATAAAGAATTCCATTGCCAATGCAGTTCAATTCCTTGAAGATACACAAACAGCTAATGGTTCATGGTATGGAAGTTGGGGAGTTTGCTACATTTATGGCACTTGGTTTGCACTTCGTGGTCTTGCAGCGGCGGGTAAAACTTACACTAATTGTGCTGCCATTCGCAAAGGCGTTAAATTTCTACTTTCAACACAGAAAGAGGATGGTGGGTGGGGAGAAAGTTATCTTTCATGCCCAAAACAGATATATGTACCTCTTGAAGGAAGTCGATCAACAGTTGTGCACACTGCTTGGGCTCTTTTGGGTCTAATTCTTGCTGGACAGGCAGAGAGAGATACTACTTCTCTTCACCGTGCTGCAAAATTGCTCATCAATTCTCAGTTGAAAGAGGGTGATTGGCCTCAACAGGAACTCACTGGAGTATTCAATAGAACGTGCATGCTGCATTACCCAATGTACAGAAATATTTATCCAATGTGGGCTCTAGCTGAATATCGTAGGTTGGTTCCCTTGCCATCCACTGAAGTTTAA
>Glyma03g27661.1 sequence type=predicted peptide gene model=Glyma03g27661 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYITGHLDSVFPEEYKKEILRYMYYHQNEDGGWGLHIEGHSNMFCTALNYICMRVLGEGPNGGHDNACARARKWIHDHGGVTHIPSWGKTWLSILGVYDWYGSKPVPPEFWVLPSFLPMHPSKIWCYCRLTYLPMSYLYGKRFVGPITPLILQLREELFTQPYEKVNWKKARNQCAKEDRYHPHSLIQDLVWDSLYIFIEPLLTRWPFNKLVREKALQVTMKHILYEDENSRYITIGCVEKALYMLACWVEDPNGDAFKKHLARVPDYLWVSEDGMAMQSFGSQGWDASLVIQALLATNLMEEIGPTLAKAHDFIKKTQVKDDPLGDFKSMYRHISKGSWTFSDQDQGWQVSDCTAETLNCCLLLSILPSEIVGEKMEPQRLYDSVNILLSLQSRKGGLAAWEPSGTQEWLEILNPTEFLGNIVVEHDYAECTGSAIQALVLFKKLYPRHREKEIKNSIANAVQFLEDTQTANGSWYGSWGVCYIYGTWFALRGLAAAGKTYTNCAAIRKGVKFLLSTQKEDGGWGESYLSCPKQIYVPLEGSRSTVVHTAWALLGLILAGQAERDTTSLHRAAKLLINSQLKEGDWPQQELTGVFNRTCMLHYPMYRNIYPMWALAEYRRLVPLPSTEV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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