SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G40850 | AT | Annotation by Michelle Graham. TAIR10: phosphoinositide 4-kinase gamma 1 | chr2:17051575-17053260 FORWARD LENGTH=561 | SoyBase | E_val: 5.00E-155 | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0016773 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor | SoyBase | N/A | ISS |
| KOG2381 | KOG | Phosphatidylinositol 4-kinase | JGI | ISS | |
| PTHR15245 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR15245:SF11 | Panther | gb def: T17H3.7 | JGI | ISS | |
| PF00454 | PFAM | Phosphatidylinositol 3- and 4-kinase | JGI | ISS | |
| UniRef100_B9SCE9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Inositol or phosphatidylinositol kinase, putative n=1 Tax=Ricinus communis RepID=B9SCE9_RICCO | SoyBase | E_val: 4.00E-179 | ISS |
| UniRef100_UPI000233789F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233789F related cluster n=1 Tax=unknown RepID=UPI000233789F | SoyBase | E_val: 0 | ISS |
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Glyma03g27610 not represented in the dataset |
Glyma03g27610 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g30590 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g121200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g27610.1 sequence type=CDS gene model=Glyma03g27610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGTGACCATTGATCGACATCATGGATTGAAGCCATTTAGCCGATCCCAGAGGTGCAAGCTCCAATCCTACGGTCACCTTGATCCCAACATCATTGAACTTAACCAAACTGGTGGTGGTGGTGCTGCTCTTTCTTCTTCTCAACACTCCTTCGGATTAGCATCACTTCAAGCCGAAAACATTCACCGCAGTTTCTCCACTCCATGCCTCCCCCTAACCACACTGCTAGGAGGGGAAGCAGACCTCACTTCTTCTTCTTCTCATCCAAGGGTTGAGATTGTTCTTGGAAGTGGAGCTCCTCCAGTGAATGCTCTAGTTGTTGAGGTTGCCATAGCCATGGCCTCAGGTGTTCATCCTATACCCCTCCCTAGTGGCCTAGGTGGTGCCTATGTTTTCCGCAACCAAAACGGCAACAACATTGCCGTAGCAAAGCCAGTGGATGAAGAGCCTTTAGCCTTGAACAACCCAAAGGGCTTAGGGGGTCAAATGCTGGGCCAGCCCGGCCTGAAGAAATCGATTCGAATCGGCGAAACTGGTATCCGAGAGTTAGCCGCTTATCTTCTTGACCATGGAGGCCTTGCTGGTGTGCCTCCTACTGTTTTAGTCAAATTCTCTCATGCTGCATTCTTCGGTGCAGCTTCTTCTTGTTCTTCTTCTCACACGCCTAAAATTGCCTCACTCCAACGCTTTGTTAGTCATGGTTTTGATGCAGGAGAATTAGGCCCTTCTTTCTTCCCAGTTTCTTCTGTACACCAAATTGGGATCCTAGACATTAGGATTATGAACCTTGATAGACATGCTGGGAATATGCTTGTGATGAAACATGACCACAACAACAGTGGCTATGTTGATGGTGTTGCTGATCTTGTTCCCATTGATCACGGTTTTTGCCTACCTGAGTGGCTTGATGATCCTTATTTCGAGTGGCTGCACTGGCCACAAGCCTCTATTCCTTTCTCTGAGTATGAAATTGACTACATTTCCAAGCTTGATCCTTTTAGGGATGCTGAGGCTTTGAGAAACGAGCTTCCTTCGTCGTTGAGGGAGTCATCCATTCGCGTTCTTATTGTTTGCACCATCTTGTTGAAGCAAGCTGCCGCTGCTGGCCTTTGTCTTGCTGAAATAGGGCAAATGATGACTAGGAAGTTTTGTGGTGGTGAAGAGTCACGTAGTGAATTGGAAAACATTTGCTTCATGGTCAAGACTAGTGTAGTTCCTCGCGGTGGTGGTGACAACAATGATAACTGCAAAGACGAAGAAACTAATGATGATCAAGTATGTGATGAAGTTGTTGCTGGTGATGGCGGCATTATTTCTTTGGCTGACCTGAACCAAGGTGAATGGGAAGCGTTTTTGGAGGTTTTTAGTGAGCTTTTGCATGGAGTTTTTGAGGCTAAGAGAAGTAGTGCAAAAGCAAAAGTTGGAACATATAATTGA
>Glyma03g27610.1 sequence type=predicted peptide gene model=Glyma03g27610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVTIDRHHGLKPFSRSQRCKLQSYGHLDPNIIELNQTGGGGAALSSSQHSFGLASLQAENIHRSFSTPCLPLTTLLGGEADLTSSSSHPRVEIVLGSGAPPVNALVVEVAIAMASGVHPIPLPSGLGGAYVFRNQNGNNIAVAKPVDEEPLALNNPKGLGGQMLGQPGLKKSIRIGETGIRELAAYLLDHGGLAGVPPTVLVKFSHAAFFGAASSCSSSHTPKIASLQRFVSHGFDAGELGPSFFPVSSVHQIGILDIRIMNLDRHAGNMLVMKHDHNNSGYVDGVADLVPIDHGFCLPEWLDDPYFEWLHWPQASIPFSEYEIDYISKLDPFRDAEALRNELPSSLRESSIRVLIVCTILLKQAAAAGLCLAEIGQMMTRKFCGGEESRSELENICFMVKTSVVPRGGGDNNDNCKDEETNDDQVCDEVVAGDGGIISLADLNQGEWEAFLEVFSELLHGVFEAKRSSAKAKVGTYN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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