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Report for Sequence Feature Glyma03g27570

Feature Type:gene_model
Chromosome:Gm03
Start:35303636
stop:35306297
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G12390AT Annotation by Michelle Graham. TAIR10: Nascent polypeptide-associated complex (NAC), alpha subunit family protein | chr3:3942344-3943595 FORWARD LENGTH=203 SoyBaseE_val: 9.00E-83ISS
GO:0006606GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
KOG2239 KOG Transcription factor containing NAC and TS-N domains JGI ISS
PTHR21713Panther NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED JGI ISS
PF00627PFAM UBA/TS-N domain JGI ISS
PF01849PFAM NAC domain JGI ISS
UniRef100_G7L4T7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nascent polypeptide-associated complex subunit alpha-like protein n=1 Tax=Medicago truncatula RepID=G7L4T7_MEDTR SoyBaseE_val: 2.00E-108ISS
UniRef100_I1JMZ3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JMZ3_SOYBN SoyBaseE_val: 1.00E-141ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g27570 not represented in the dataset

Glyma03g27570 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma19g30540 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g120800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma03g27570.1   sequence type=CDS   gene model=Glyma03g27570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTACTCAGACCCAAGAGGAGCTTCTTGCTCAACATCTCGAACAGCAAAAGATCCATGATGATGAACCTGTCGTCGAGGATGATAATGATGAGGAAGAGGATGATGATGATGATGAGGATGACGAGGATGATGACCATGCCGACGGACTAGAAGGTGATGCATCTGGTAGGTCCAAGCAGACCAGAAGTGAAAAGAAGAGTCGCAAGGCAATGCTTAAACTTGGAATGAAACCTGTAACAGGTGTCAGCCGAGTGACGGTCAAGAAGAGCAAGAATATCCTGTTCGTCATCTCAAAACCAGACGTTTTCAAGAGTCCAACGTCTGACACGTACATTATATTTGGGGAAGCCAAGATTGAAGACTTGAGCTCACAGCTACAAACTCAGGCAGCAGAGCAATTCAAGGCTCCTAATTTGAGCAATGTTGGATCAAAGCCTGAATCTTCTGCTGTTGCTCAAGATGATGAGGAAGTGGATGAGGCTGGTGTAGATCCCAAGGACATAGAGTTGGTGATGACTCAAGCTGGCGTGTCAAGACCTAAAGCCGTTAAAGCTCTCAAGGCGGCCGGTGGTGACATTGTTGCTGCCATTATGGAGTTAACTAATTAA

>Glyma03g27570.1   sequence type=predicted peptide   gene model=Glyma03g27570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTQTQEELLAQHLEQQKIHDDEPVVEDDNDEEEDDDDDEDDEDDDHADGLEGDASGRSKQTRSEKKSRKAMLKLGMKPVTGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIIFGEAKIEDLSSQLQTQAAEQFKAPNLSNVGSKPESSAVAQDDEEVDEAGVDPKDIELVMTQAGVSRPKAVKALKAAGGDIVAAIMELTN*







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