Report for Sequence Feature Glyma03g27560
Feature Type: gene_model
Chromosome: Gm03
Start: 35282713
stop: 35284165
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g27560
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G41010 AT
Annotation by Michelle Graham. TAIR10: calmodulin (CAM)-binding protein of 25 kDa | chr2:17114015-17114731 REVERSE LENGTH=238
SoyBase E_val: 1.00E-40 ISS
GO:0009414 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to water deprivation
SoyBase N/A ISS
GO:0009651 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to salt stress
SoyBase N/A ISS
GO:0010337 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of salicylic acid metabolic process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005516 GO-mf
Annotation by Michelle Graham. GO Molecular Function: calmodulin binding
SoyBase N/A ISS
PF05678 PFAM
VQ motif
JGI ISS
UniRef100_D7LGI4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Atcambp25-binding protein OF 25 kDa n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LGI4_ARALL
SoyBase E_val: 3.00E-38 ISS
UniRef100_I1JMZ2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JMZ2_SOYBN
SoyBase E_val: 4.00E-164 ISS
Proteins Associated with Glyma03g27560
Locus Gene Symbol Protein Name
VQ6 VQ motif containing protein gene 6
Expression Patterns of Glyma03g27560
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma03g27560
Paralog Evidence Comments
Glyma19g30531 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g27560 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g120700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g27560
Coding sequences of Glyma03g27560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g27560.1 sequence type=CDS gene model=Glyma03g27560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCATCATCCGAGAACGTAGCCAGCATTGAGCCATGTATGCTTCGTCCCCCTGTCACCGATTCATGGCTCGCAGAGTTCTTCGCTCGTGACGCCGATGCCTTAACCAAGGCTCTTCAGAAGTCTCTCTCCGGTACTGTCTTGCCGGACGAGGAAAACTACTTTTCTCCCTTTCTGCCCAAGTCAGACCCCGCCGTCGCCACCCCCACCGTCTCCAGCCTCTCCGGCTCCGATCAGGACTCGGCGCCGCGCCGCCGCGCGCCGCTTCCGCCGTCCGGGAAGATCTCCAAGAGGAAGTCCCGCGCCTCGAAGCGCTCGCAGACGACGTTCATCACGGCGGACCCCGCCAACTTCCGACAGATGGTGCAGCAGGTCACCGGCGTGCGGTTCGGCGGCGCCGGCCAGCCAATTGCGCCGGCGGCGGGGGTTGTGAAGCCCGAGCCGCAGCGTGCCTCGGGCCTTGCCAGGTTCCCCGCCGGCGCGGGGTGCCTGCCGACGCTCGACACGTCGGCCTTCCTGCTGGACCATCACCAGCAGGTGGTGGGGCCCTCCTCTGTTAACTCTGGGCCTGCCACCGGGCTTTCTGGGCCCGGCCCGCTCCCCTTCGCCCAACCCCTCCTTGACGCTTCCTTCGCCTCCGCAGGGTTAGATTTTGACACCTTCTCCAGCTTCCCCACTCTCGAGTCGTGGAAAGTCATGTGA
Predicted protein sequences of Glyma03g27560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g27560.1 sequence type=predicted peptide gene model=Glyma03g27560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASSENVASIEPCMLRPPVTDSWLAEFFARDADALTKALQKSLSGTVLPDEENYFSPFLPKSDPAVATPTVSSLSGSDQDSAPRRRAPLPPSGKISKRKSRASKRSQTTFITADPANFRQMVQQVTGVRFGGAGQPIAPAAGVVKPEPQRASGLARFPAGAGCLPTLDTSAFLLDHHQQVVGPSSVNSGPATGLSGPGPLPFAQPLLDASFASAGLDFDTFSSFPTLESWKVM*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
