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Report for Sequence Feature Glyma03g27541

Feature Type:gene_model
Chromosome:Gm03
Start:35253387
stop:35256737
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g27541
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G19750AT Annotation by Michelle Graham. TAIR10: Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr5:6677124-6679127 FORWARD LENGTH=288 SoyBaseE_val: 1.00E-58ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005778GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisomal membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1944 KOG Peroxisomal membrane protein MPV17 and related proteins JGI ISS
PTHR11266Panther PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 JGI ISS
PTHR11266:SF4Panther PXMP-2 - RELATED JGI ISS
PF04117PFAM Mpv17 / PMP22 family JGI ISS
UniRef100_G7L4T1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein Mpv17 n=1 Tax=Medicago truncatula RepID=G7L4T1_MEDTR SoyBaseE_val: 5.00E-57ISS
UniRef100_UPI000233789DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233789D related cluster n=1 Tax=unknown RepID=UPI000233789D SoyBaseE_val: 1.00E-137ISS

Expression Patterns of Glyma03g27541
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g27541 not represented in the dataset
Glyma03g27541 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g27541
ParalogEvidenceComments
Glyma19g30520 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g27541 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g120600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g27541
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g27541
>Glyma03g27541.1   sequence type=CDS   gene model=Glyma03g27541   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTATGGAGGAACATTATGCCCACACGCGCACAAATTCCTTCTCTTGCCCATTGCCTTCAACCATTGCCGTCAAAACACCACTCGCCTTCAACAATTTCAAACTCTCACTCCGCTCCACTCTCAGTCCCTTCCTTTCAACTTCAACAACTCCGCCACGCCCTTCAAACCCACCCTCCCCCTCCTCTCCGCCCTCCCCAACGACGGCTTCGGCGGAAGCGGCCCACGTGGCGGCGGTGGCGGTGGCGGTGGCGGAGGCTCTGACGGTCCGAATTCCGGCGGCGGAGGCGATGGAGGAGACAAGTACTTGGCTCTTCTTGGAAAACACCCTGTTGCCGTGAAAGCTCTAACATCTGCAATTTTGAATCTAATTGGAGATTTGTTATGCGAGCTTGTGATAGACAAAGTGCCATCACTGGATTTCAAGAGGACATTTGTCTTTACTTTTCTTGGTTTTGCTTTAGTGGGTCCAACATTGCATTTCTGGTATTTGTATATGAGTAAATTGGTTACACTTCCTGGAGCATCAGGTGCCCTTTTGCGGCTTGTACTTGATCAGTTCTTATTTTCACCCATATTCAGCGGAGTTTTCTTATCTACATTGGTGACACTGGAGGGAAGCCCATCACAAGTTGTACCCAAGCTTAAACAGGTGGGTGTAAACAGTATTGTCCTTGCTGCTAATGTTATTGCTTTGATGTGGAATATTATTCTCTCATTTATGGCACATAAAGAGGTTCTTACAAAATAG
Predicted protein sequences of Glyma03g27541
>Glyma03g27541.1   sequence type=predicted peptide   gene model=Glyma03g27541   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYGGTLCPHAHKFLLLPIAFNHCRQNTTRLQQFQTLTPLHSQSLPFNFNNSATPFKPTLPLLSALPNDGFGGSGPRGGGGGGGGGGSDGPNSGGGGDGGDKYLALLGKHPVAVKALTSAILNLIGDLLCELVIDKVPSLDFKRTFVFTFLGFALVGPTLHFWYLYMSKLVTLPGASGALLRLVLDQFLFSPIFSGVFLSTLVTLEGSPSQVVPKLKQVGVNSIVLAANVIALMWNIILSFMAHKEVLTK*






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