Glyma03g27520 - SoyBase

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Report for Sequence Feature Glyma03g27520

Feature Type:	gene_model
Chromosome:	Gm03
Start:	35231383
stop:	35238649
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g27520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G56900	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr3:21066330-21069343 FORWARD LENGTH=447	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0016570	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone modification	SoyBase	N/A	ISS
GO:0034968	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone lysine methylation	SoyBase	N/A	ISS
GO:0048449	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ formation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005635	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG2139	KOG	WD40 repeat protein	JGI		ISS
PTHR14494	Panther	ALADIN/ADRACALIN/AAAS	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_B7F8R8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: cDNA, clone: J065154E06, full insert sequence n=1 Tax=Oryza sativa Japonica Group RepID=B7F8R8_ORYSJ	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EB73	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EB73 related cluster n=1 Tax=unknown RepID=UPI000233EB73	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g27520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g27520 not represented in the dataset	Glyma03g27520 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g27520

Paralog	Evidence	Comments
Glyma19g30500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g27520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g120400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g27520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g27520

Limit To All Plant Sequences

>Glyma03g27520.2   sequence type=transcript   gene model=Glyma03g27520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTATATTTATCCTAAAAATTGCTCTATATATACTACATACATTTTGATTAATTTTTTACTTGGTCTATAATGTTTGAACTAGAAGTAAAATACTAAACTTATGTTGATCTGAATTAAAGAAGAAAAAGCGGGAAAACGAATAAGAATTTTATGCCGAATCAGTGAATCCATTTTAAAGCTAAATAAAACCCTCCTCTCTTTCTCTGTCTCTCTAACGGGAACCAAACATGGCTTCCTTCCCTCCTCTAGGTTCACTCACTCTCTGCGAAGTCAATCGTGACCTAATCACTGTCGACGCCCTCTCTGACGATCGAGCCAACCAAACCTACGGAAAAATCCTCTCCCGTCCCGTTTCACAATCTGGAGAACGACGCTTCCGATCAGGATGGTGCAACGACGACGGCGACAACCGCCGGAGAAAGCGTTCGGAGGAAAAGCCCGGTGGCACTCTTGCAAGGGTTTATGAACAGCTATCTCGGACGCCTCTTTTACCCTGATGATGTGCATTTGTTGCCGGAGGTTGATCTCCAAGGAGTAAGCTGGCACCCTAATAAGCATATAATTGCTTTTATCTCTGCCCCAACACAAGTCTTAGTTCGTGATTACCAAGAGTCTGAGGGGAAGGATCCGAGTATTTTGACAAATGAGTCGCAGAGAGATGCTAGAGTGCTGGAGTGGAGGCCCAATGGTGGGAAAATGCTTGCTGTGGGTTGCAAGGGTGGAATTTGCATGTGGGCTGCTTCTTATCCTGGAAATGCTGCATCTGTTAGATCTGGAGCTGCTTCCTTTTTAGGAGGTTTGTCCAGAAGCTCAGGGAATCGGTATATCCTGGTCGATTTTCTTCGTAGTCCATATGATGAGCATGTTAGTGCTCTCACTTGGAGTCCAGATGGAAGATACTTAGCTTCTGCTTCATATGAAAGCTCCTCGTTCTCTGTATGGGATTTTGCTCAAGGTGTGGGAACACCCATTCGACGTGGATTAGGAGGCATATCAATGCTGAAGTGGTCACCTACTGGAGATTACTTCTTTGCTTCAAAATTTGATGGAACATTTTATCTTTGGGAAACAAACACATGGACATCAGAACAATGGTCATCAACTAGTGGTTTTGTCAAGGGTGCAACATGGGATCCAGATGGGCGTATGATACTTCTTGCATTTTCTGAATCGTCAACTTTGGGATCTATTCACTTTGCATCAAAGCCTCCGTCATTAGATGCACATTTGTTACCTGTTGATTTGCCGGAAATATTATCATTGACAGGCAGTCAGGGAATTGAAAAGATAGCATGGGATAATTCAGGGGAACGATTGGCCGTGTCTTTTAAAGGTGGAGAGGATATATACAGGGGTCTGATCGCCGTATATGATACAAGAAGGACTCCTCTTATATCTACATCATTAATAGGATTTATAAGAGGGCCTGGAGACAATCCAAAGCCAATCTCGTTTTTATTTCACGGGAAGTTTAAGCAGGGACCATTGCTTTCTGTGTGCTGGAGCAGCGGGTTTTGTTGCACTTATCCCCTCTTATTTCGCTCTCATATGCTTCCATAAGAAGGATTTCTGTGAAATTTTGATGTTTGTATACGATTGGGGGGAGCAAGTTGACTTTGATGTTAATGTTATTTATTCAATTTTTTTTGGATTACTTTATGGTCTTCTTTACCATCAAAATAGGATGGTAACTGGATTCTGACTAAATGGGTATCGTAATCTTCCATAATGGATGGGGTATTTATTCATCACATGTCTTTGGGTTTGAGATAGGTAATTTACCCACGTAATTTTGTAGAGTATCATACCATCCAATTCTATCTATATTCGTATAATATATTTA

>Glyma03g27520.3   sequence type=transcript   gene model=Glyma03g27520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTATATTTATCCTAAAAATTGCTCTATATATACTACATACATTTTGATTAATTTTTTACTTGGTCTATAATGTTTGAACTAGAAGTAAAATACTAAACTTATGTTGATCTGAATTAAAGAAGAAAAAGCGGGAAAACGAATAAGAATTTTATGCCGAATCAGTGAATCCATTTTAAAGCTAAATAAAACCCTCCTCTCTTTCTCTGTCTCTCTAACGGGAACCAAACATGGCTTCCTTCCCTCCTCTAGGTTCACTCACTCTCTGCGAAGTCAATCGTGACCTAATCACTGTCGACGCCCTCTCTGACGATCGAGCCAACCAAACCTACGGAAAAATCCTCTCCCGTCCCGTTTCACAATCTGGAGAACGACGCTTCCGATCAGGATGGTGCAACGACGACGGCGACAACCGCCGGAGAAAGCGTTCGGAGGAAAAGCCCGGTGGCACTCTTGCAAGGGTTTATGAACAGCTATCTCGGACGCCTCTTTTACCCTGATGATGTGCATTTGTTGCCGGAGGTTGATCTCCAAGGAGTAAGCTGGCACCCTAATAAGCATATAATTGCTTTTATCTCTGCCCCAACACAAGTCTTAGTTCGTGATTACCAAGAGTCTGAGGGGAAGGATCCGAGTATTTTGACAAATGAGTCGCAGAGAGATGCTAGAGTGCTGGAGTGGAGGCCCAATGGTGGGAAAATGCTTGCTGTGGGTTGCAAGGGTGGAATTTGCATGTGGGCTGCTTCTTATCCTGGAAATGCTGCATCTGTTAGATCTGGAGCTGCTTCCTTTTTAGGAGGTTTGTCCAGAAGCTCAGGGAATCGGTATATCCTGGTCGATTTTCTTCGTAGTCCATATGATGAGCATGTTAGTGCTCTCACTTGGAGTCCAGATGGAAGATACTTAGCTTCTGCTTCATATGAAAGCTCCTCGTTCTCTGTATGGGATTTTGCTCAAGGTGTGGGAACACCCATTCGACGTGGATTAGGAGGCATATCAATGCTGAAGTGGTCACCTACTGGAGATTACTTCTTTGCTTCAAAATTTGATGGAACATTTTATCTTTGGGAAACAAACACATGGACATCAGAACAATGGTCATCAACTAGTGGTTTTGTCAAGGGTGCAACATGGGATCCAGATGGGCGTATGATACTTCTTGCATTTTCTGAATCGTCAACTTTGGGATCTATTCACTTTGCATCAAAGCCTCCGTCATTAGATGCACATTTGTTACCTGTTGATTTGCCGGAAATATTATCATTGACAGGCAGGGAATTGAAAAGATAGCATGGGATAATTCAGGGGAACGATTGGCCGTGTCTTTTAAAGGTGGAGAGGATATATACAGGGGTCTGATCGCCGTATATGATACAAGAAGGACTCCTCTTATATCTACATCATTAATAGGATTTATAAGAGGGCCTGGAGACAATCCAAAGCCAATCTCGTTTTTATTTCACGGGAAGTTTAAGCAGGGACCATTGCTTTCTGTGTGCTGGAGCAGCGGGTTTTGTTGCACTTATCCCCTCTTATTTCGCTCTCATATGCTTCCATAAGAAGGATTTCTGTGAAATTTTGATGTTTGTATACGATTGGGGGGAGCAAGTTGACTTTGATGTTAATGTTATTTATTCAATTTTTTTTGGATTACTTTATGGTCTTCTTTACCATCAAAATAGGATGGTAACTGGATTCTGACTAAATGGGTATCGTAATCTTCCATAATGGATGGGGTATTTATTCATCACATGTCTTTGGGTTTGAGATAGGTAATTTACCCACGTAATTTTGTAGAGTATCATACCATCCAATTCTATCTATATTCGTATAATATATTTA

Coding sequences of Glyma03g27520

Limit To All Plant Sequences

>Glyma03g27520.1   sequence type=CDS   gene model=Glyma03g27520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCTTCCCTCCTCTAGGTTCACTCACTCTCTGCGAAGTCAATCGTGACCTAATCACTGTCGACGCCCTCTCTGACGATCGAGCCAACCAAACCTACGGAAAAATCCTCGGTTTGGTGTTCAGTCCCGTCCCGTTTCACAATCTGGAGAACGACGCTTCCGATCAGGATGGTGCAACGACGACGGCGACAACCGCCGGAGAAAGCGTTCGGAGGAAAAGCCCGGTGGCACTCTTGCAAGGGTTTATGAACAGCTATCTCGGACGCCTCTTTTACCCTGATGATGTGCATTTGTTGCCGGAGGTTGATCTCCAAGGAGTAAGCTGGCACCCTAATAAGCATATAATTGCTTTTATCTCTGCCCCAACACAAGTCTTAGTTCGTGATTACCAAGAGTCTGAGGGGAAGGATCCGAGTATTTTGACAAATGAGTCGCAGAGAGATGCTAGAGTGCTGGAGTGGAGGCCCAATGGTGGGAAAATGCTTGCTGTGGGTTGCAAGGGTGGAATTTGCATGTGGGCTGCTTCTTATCCTGGAAATGCTGCATCTGTTAGATCTGGAGCTGCTTCCTTTTTAGGAGGTTTGTCCAGAAGCTCAGGGAATCGGTATATCCTGGTCGATTTTCTTCGTAGTCCATATGATGAGCATGTTAGTGCTCTCACTTGGAGTCCAGATGGAAGATACTTAGCTTCTGCTTCATATGAAAGCTCCTCGTTCTCTGTATGGGATTTTGCTCAAGGTGTGGGAACACCCATTCGACGTGGATTAGGAGGCATATCAATGCTGAAGTGGTCACCTACTGGAGATTACTTCTTTGCTTCAAAATTTGATGGAACATTTTATCTTTGGGAAACAAACACATGGACATCAGAACAATGGTCATCAACTAGTGGTTTTGTCAAGGGTGCAACATGGGATCCAGATGGGCGTATGATACTTCTTGCATTTTCTGAATCGTCAACTTTGGGATCTATTCACTTTGCATCAAAGCCTCCGTCATTAGATGCACATTTGTTACCTGTTGATTTGCCGGAAATATTATCATTGACAGGCAGTCAGGGAATTGAAAAGATAGCATGGGATAATTCAGGGGAACGATTGGCCGTGTCTTTTAAAGGTGGAGAGGATATATACAGGGGTCTGATCGCCGTATATGATACAAGAAGGACTCCTCTTATATCTACATCATTAATAGGATTTATAAGAGGGCCTGGAGACAATCCAAAGCCAATCTCGTTTTTATTTCACGGGAAGTTTAAGCAGGGACCATTGCTTTCTGTGTGCTGGAGCAGCGGGTTTTGTTGCACTTATCCCCTCTTATTTCGCTCTCATATGCTTCCATAA

>Glyma03g27520.2   sequence type=CDS   gene model=Glyma03g27520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAGCTATCTCGGACGCCTCTTTTACCCTGATGATGTGCATTTGTTGCCGGAGGTTGATCTCCAAGGAGTAAGCTGGCACCCTAATAAGCATATAATTGCTTTTATCTCTGCCCCAACACAAGTCTTAGTTCGTGATTACCAAGAGTCTGAGGGGAAGGATCCGAGTATTTTGACAAATGAGTCGCAGAGAGATGCTAGAGTGCTGGAGTGGAGGCCCAATGGTGGGAAAATGCTTGCTGTGGGTTGCAAGGGTGGAATTTGCATGTGGGCTGCTTCTTATCCTGGAAATGCTGCATCTGTTAGATCTGGAGCTGCTTCCTTTTTAGGAGGTTTGTCCAGAAGCTCAGGGAATCGGTATATCCTGGTCGATTTTCTTCGTAGTCCATATGATGAGCATGTTAGTGCTCTCACTTGGAGTCCAGATGGAAGATACTTAGCTTCTGCTTCATATGAAAGCTCCTCGTTCTCTGTATGGGATTTTGCTCAAGGTGTGGGAACACCCATTCGACGTGGATTAGGAGGCATATCAATGCTGAAGTGGTCACCTACTGGAGATTACTTCTTTGCTTCAAAATTTGATGGAACATTTTATCTTTGGGAAACAAACACATGGACATCAGAACAATGGTCATCAACTAGTGGTTTTGTCAAGGGTGCAACATGGGATCCAGATGGGCGTATGATACTTCTTGCATTTTCTGAATCGTCAACTTTGGGATCTATTCACTTTGCATCAAAGCCTCCGTCATTAGATGCACATTTGTTACCTGTTGATTTGCCGGAAATATTATCATTGACAGGCAGTCAGGGAATTGAAAAGATAGCATGGGATAATTCAGGGGAACGATTGGCCGTGTCTTTTAAAGGTGGAGAGGATATATACAGGGGTCTGATCGCCGTATATGATACAAGAAGGACTCCTCTTATATCTACATCATTAATAGGATTTATAAGAGGGCCTGGAGACAATCCAAAGCCAATCTCGTTTTTATTTCACGGGAAGTTTAAGCAGGGACCATTGCTTTCTGTGTGCTGGAGCAGCGGGTTTTGTTGCACTTATCCCCTCTTATTTCGCTCTCATATGCTTCCATAA

>Glyma03g27520.3   sequence type=CDS   gene model=Glyma03g27520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAGCTATCTCGGACGCCTCTTTTACCCTGATGATGTGCATTTGTTGCCGGAGGTTGATCTCCAAGGAGTAAGCTGGCACCCTAATAAGCATATAATTGCTTTTATCTCTGCCCCAACACAAGTCTTAGTTCGTGATTACCAAGAGTCTGAGGGGAAGGATCCGAGTATTTTGACAAATGAGTCGCAGAGAGATGCTAGAGTGCTGGAGTGGAGGCCCAATGGTGGGAAAATGCTTGCTGTGGGTTGCAAGGGTGGAATTTGCATGTGGGCTGCTTCTTATCCTGGAAATGCTGCATCTGTTAGATCTGGAGCTGCTTCCTTTTTAGGAGGTTTGTCCAGAAGCTCAGGGAATCGGTATATCCTGGTCGATTTTCTTCGTAGTCCATATGATGAGCATGTTAGTGCTCTCACTTGGAGTCCAGATGGAAGATACTTAGCTTCTGCTTCATATGAAAGCTCCTCGTTCTCTGTATGGGATTTTGCTCAAGGTGTGGGAACACCCATTCGACGTGGATTAGGAGGCATATCAATGCTGAAGTGGTCACCTACTGGAGATTACTTCTTTGCTTCAAAATTTGATGGAACATTTTATCTTTGGGAAACAAACACATGGACATCAGAACAATGGTCATCAACTAGTGGTTTTGTCAAGGGTGCAACATGGGATCCAGATGGGCGTATGATACTTCTTGCATTTTCTGAATCGTCAACTTTGGGATCTATTCACTTTGCATCAAAGCCTCCGTCATTAGATGCACATTTGTTACCTGTTGATTTGCCGGAAATATTATCATTGACAGGCAGGGAATTGAAAAGATAG

Predicted protein sequences of Glyma03g27520

Limit To All Plant Sequences

>Glyma03g27520.1   sequence type=predicted peptide   gene model=Glyma03g27520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASFPPLGSLTLCEVNRDLITVDALSDDRANQTYGKILGLVFSPVPFHNLENDASDQDGATTTATTAGESVRRKSPVALLQGFMNSYLGRLFYPDDVHLLPEVDLQGVSWHPNKHIIAFISAPTQVLVRDYQESEGKDPSILTNESQRDARVLEWRPNGGKMLAVGCKGGICMWAASYPGNAASVRSGAASFLGGLSRSSGNRYILVDFLRSPYDEHVSALTWSPDGRYLASASYESSSFSVWDFAQGVGTPIRRGLGGISMLKWSPTGDYFFASKFDGTFYLWETNTWTSEQWSSTSGFVKGATWDPDGRMILLAFSESSTLGSIHFASKPPSLDAHLLPVDLPEILSLTGSQGIEKIAWDNSGERLAVSFKGGEDIYRGLIAVYDTRRTPLISTSLIGFIRGPGDNPKPISFLFHGKFKQGPLLSVCWSSGFCCTYPLLFRSHMLP*

>Glyma03g27520.2   sequence type=predicted peptide   gene model=Glyma03g27520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSYLGRLFYPDDVHLLPEVDLQGVSWHPNKHIIAFISAPTQVLVRDYQESEGKDPSILTNESQRDARVLEWRPNGGKMLAVGCKGGICMWAASYPGNAASVRSGAASFLGGLSRSSGNRYILVDFLRSPYDEHVSALTWSPDGRYLASASYESSSFSVWDFAQGVGTPIRRGLGGISMLKWSPTGDYFFASKFDGTFYLWETNTWTSEQWSSTSGFVKGATWDPDGRMILLAFSESSTLGSIHFASKPPSLDAHLLPVDLPEILSLTGSQGIEKIAWDNSGERLAVSFKGGEDIYRGLIAVYDTRRTPLISTSLIGFIRGPGDNPKPISFLFHGKFKQGPLLSVCWSSGFCCTYPLLFRSHMLP*

>Glyma03g27520.3   sequence type=predicted peptide   gene model=Glyma03g27520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSYLGRLFYPDDVHLLPEVDLQGVSWHPNKHIIAFISAPTQVLVRDYQESEGKDPSILTNESQRDARVLEWRPNGGKMLAVGCKGGICMWAASYPGNAASVRSGAASFLGGLSRSSGNRYILVDFLRSPYDEHVSALTWSPDGRYLASASYESSSFSVWDFAQGVGTPIRRGLGGISMLKWSPTGDYFFASKFDGTFYLWETNTWTSEQWSSTSGFVKGATWDPDGRMILLAFSESSTLGSIHFASKPPSLDAHLLPVDLPEILSLTGRELKR*

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