Glyma03g27500 - SoyBase

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Report for Sequence Feature Glyma03g27500

Feature Type:	gene_model
Chromosome:	Gm03
Start:	35223657
stop:	35228928
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g27500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68070	AT	Annotation by Michelle Graham. TAIR10: Zinc finger, C3HC4 type (RING finger) family protein \| chr1:25515412-25516767 REVERSE LENGTH=343	SoyBase	E_val: 5.00E-84	ISS
GO:0006661	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR11203	Panther	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR	JGI		ISS
PTHR11203:SF27	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7L4S3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase n=1 Tax=Medicago truncatula RepID=G7L4S3_MEDTR	SoyBase	E_val: 1.00E-161	ISS
UniRef100_I1JMY7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JMY7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g27500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g27500

Paralog	Evidence	Comments
Glyma19g30480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g27500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g120200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g27500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g27500

Limit To All Plant Sequences

>Glyma03g27500.2   sequence type=transcript   gene model=Glyma03g27500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGCACTAACACTCGCACTTTCACTTTCCCTTTCCCTTTCACTTAACACTGATTGGATTGAATTGAATTCATCTGAGCCAATGATTATCACTAACTAGTAACTAGCCACGCTCCACTTAAACTAAACCAAACAAACCCCGTTCACGTCCTCATCTCGATGTGACGTCGTTTCACTCCCAAACCCACACCTTTCCCAGAATCACCACCACTTATTACACCTCCTATTCCATTCATTTTCTAACCCCTTTTTTAATAACACAAACCTAAACTCTCCCCCTCTTCTCTAACATGGACCAACAGCAGCGCCACGTCAGCAGCGGAACTACTAATCCCGTGCTCCGCTTCCCCACGGTGCGCCCCCTCCCCTTCGCGCGCCTCGTCGCCGCCTCCCGCCGCCGCCTCTTCCTCTCCGACTGCGCCGACCGCCGATCCGACGACGACGGAGATGGTGACGGCGACTCCGGCGAGTGCGCGTACTCGCGGGCGGTGCTCGTGCTCGACATGGTCTGGAACCTCGCCTTCGTCGTCGTCGCCGCCGGCGTCCTCCTCTCCACGCTCCGCGAGCGGCCGTCGACGCCGCTGAGGCTCTGGCTCTGCGGCTACGCCTTCGAGTGCGTCCTTCACATGGCCTTCGTCTACTTTGAGTTCCGAACCGGAATTCGCGACTCCTTCTCTCACACTGCCTATAGTATTGTGAAGAAGCTAGAGCCTATGAACACTCTGGCATCATCTGTTTGGTGGATCTTTGGATTTTATTGGATTGTTGTGGGTGACCAAGCACTTTTGGAAGATTCTCCACGTCTCTACTGGTTAACAGTGGTCTTTCTAGCCTTTGACGTATTTTTTATTATCTTTTGCATTGGGATGGCATGTATAGTTTTCTTTGCCCTCTTCTGCATCATCCCAATAATAGCACTAGCTTATGCTATGAGAATCAGAGAAGGTGCATCAGAAGAAGATATCTTGTCACTTCCTATGTATAGGTTTAGTCAGTCAAATTCATTGGTGATGGTTGATGACAACAAGAAGCAACTTATTAAAGGAAGAGTAGATTCATGCAATGGAAGCCATATGAGTGCGCTTTCTCTCCATCCAGATGATTCTTTGAAATGCATCGTGCAACTGCTGAAAGATAACTGAACTGCTTCGGATTATGTTGTAGGAATGCTGTATCTGCCTTTGTCCGTATGTTGAAGGAGCAGAACTGTATCGCCTTCCCTGTACGCACCATTTTCATTGCGAATGCATCGGCCGTTGGCTTCAGACAAAAGCAACTTGCCCGCTCTGCAAATTTAATATCCTTAGAGGTGATACATTGGTTTGAACTTTCTGAGATAAAGATTGAACAACGGTGAGGTGCATTATCGCTCAAAACAAACTTGACCTTGGAGAGCCAGAACATTTGATACTCTGCTGACTAGTAATAAGTAGAAAAGAAAAGGACATCTCCACCCCTTCAGCTTTTACTGGGTTCTAGTCTTAGGATTAGTTTCCATAAAGCTCTTACATCTTTTAGTACAAAATGTTCTTAATTTTATGATGGGGTATGCATATATTGTTGGACGGTGGAGAAGGTCTCCCCTTAATTTGTACTTACTAGGGGTTTTATAAAAACAATTTTTCTGTACAGAAATCCTTTTTTGTTCGAGTACTTTGCCCACCTCCACCATCAAATAAATTAGAGACGCATACGTTATACCCTTAAACCTAGAAAGATAATAGTGGGATGCCAATGGGAAAAGGGTGGTTAGGAACCAACCTTAAACTAATTTTTCCGTTTGGCCTTTAAGTACCATTAGATGTTTTGTACTCGGTCATTCGATTGTGAACTAAGTTAACGAAGTCTACAGCATGTGTTTGTTTTGGAATGCATTGCCCTGCCAATTGGTGAGTGCAGAATTTTGATTCCAAAACAAGGATCGAGTACTATGTGCCGAGCAAAAAATTGACACAGATCGGCAGAGACAAACGTGAAACACTAACTCTTCTACTAGCTCCCAAAATTTTGAAAATAAGGAACTTAATATTTGGTTTTCCTTAGATTCACTTAAAGATTTTGATG

Coding sequences of Glyma03g27500

Limit To All Plant Sequences

>Glyma03g27500.1   sequence type=CDS   gene model=Glyma03g27500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCAACAGCAGCGCCACGTCAGCAGCGGAACTACTAATCCCGTGCTCCGCTTCCCCACGGTGCGCCCCCTCCCCTTCGCGCGCCTCGTCGCCGCCTCCCGCCGCCGCCTCTTCCTCTCCGACTGCGCCGACCGCCGATCCGACGACGACGGAGATGGTGACGGCGACTCCGGCGAGTGCGCGTACTCGCGGGCGGTGCTCGTGCTCGACATGGTCTGGAACCTCGCCTTCGTCGTCGTCGCCGCCGGCGTCCTCCTCTCCACGCTCCGCGAGCGGCCGTCGACGCCGCTGAGGCTCTGGCTCTGCGGCTACGCCTTCGAGTGCGTCCTTCACATGGCCTTCGTCTACTTTGAGTTCCGAACCGGAATTCGCGACTCCTTCTCTCACACTGCCTATAGTATTGTGAAGAAGCTAGAGCCTATGAACACTCTGGCATCATCTGTTTGGTGGATCTTTGGATTTTATTGGATTGTTGTGGGTGACCAAGCACTTTTGGAAGATTCTCCACGTCTCTACTGGTTAACAGTGGTCTTTCTAGCCTTTGACGTATTTTTTATTATCTTTTGCATTGGGATGGCATGTATAGTTTTCTTTGCCCTCTTCTGCATCATCCCAATAATAGCACTAGCTTATGCTATGAGAATCAGAGAAGGTGCATCAGAAGAAGATATCTTGTCACTTCCTATGTATAGGTTTAGTCAGTCAAATTCATTGGTGATGGTTGATGACAACAAGAAGCAACTTATTAAAGGAAGAGTAGATTCATGCAATGGAAGCCATATGAGTGCGCTTTCTCTCCATCCAGATGATTCTGAATGCTGTATCTGCCTTTGTCCGTATGTTGAAGGAGCAGAACTGTATCGCCTTCCCTGTACGCACCATTTTCATTGCGAATGCATCGGCCGTTGGCTTCAGACAAAAGCAACTTGCCCGCTCTGCAAATTTAATATCCTTAGAGGTGATACATTGGTTTGA

>Glyma03g27500.2   sequence type=CDS   gene model=Glyma03g27500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCAACAGCAGCGCCACGTCAGCAGCGGAACTACTAATCCCGTGCTCCGCTTCCCCACGGTGCGCCCCCTCCCCTTCGCGCGCCTCGTCGCCGCCTCCCGCCGCCGCCTCTTCCTCTCCGACTGCGCCGACCGCCGATCCGACGACGACGGAGATGGTGACGGCGACTCCGGCGAGTGCGCGTACTCGCGGGCGGTGCTCGTGCTCGACATGGTCTGGAACCTCGCCTTCGTCGTCGTCGCCGCCGGCGTCCTCCTCTCCACGCTCCGCGAGCGGCCGTCGACGCCGCTGAGGCTCTGGCTCTGCGGCTACGCCTTCGAGTGCGTCCTTCACATGGCCTTCGTCTACTTTGAGTTCCGAACCGGAATTCGCGACTCCTTCTCTCACACTGCCTATAGTATTGTGAAGAAGCTAGAGCCTATGAACACTCTGGCATCATCTGTTTGGTGGATCTTTGGATTTTATTGGATTGTTGTGGGTGACCAAGCACTTTTGGAAGATTCTCCACGTCTCTACTGGTTAACAGTGGTCTTTCTAGCCTTTGACGTATTTTTTATTATCTTTTGCATTGGGATGGCATGTATAGTTTTCTTTGCCCTCTTCTGCATCATCCCAATAATAGCACTAGCTTATGCTATGAGAATCAGAGAAGGTGCATCAGAAGAAGATATCTTGTCACTTCCTATGTATAGGTTTAGTCAGTCAAATTCATTGGTGATGGTTGATGACAACAAGAAGCAACTTATTAAAGGAAGAGTAGATTCATGCAATGGAAGCCATATGAGTGCGCTTTCTCTCCATCCAGATGATTCTTTGAAATGCATCGTGCAACTGCTGAAAGATAACTGA

Predicted protein sequences of Glyma03g27500

Limit To All Plant Sequences

>Glyma03g27500.1   sequence type=predicted peptide   gene model=Glyma03g27500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQQQRHVSSGTTNPVLRFPTVRPLPFARLVAASRRRLFLSDCADRRSDDDGDGDGDSGECAYSRAVLVLDMVWNLAFVVVAAGVLLSTLRERPSTPLRLWLCGYAFECVLHMAFVYFEFRTGIRDSFSHTAYSIVKKLEPMNTLASSVWWIFGFYWIVVGDQALLEDSPRLYWLTVVFLAFDVFFIIFCIGMACIVFFALFCIIPIIALAYAMRIREGASEEDILSLPMYRFSQSNSLVMVDDNKKQLIKGRVDSCNGSHMSALSLHPDDSECCICLCPYVEGAELYRLPCTHHFHCECIGRWLQTKATCPLCKFNILRGDTLV*

>Glyma03g27500.2   sequence type=predicted peptide   gene model=Glyma03g27500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQQQRHVSSGTTNPVLRFPTVRPLPFARLVAASRRRLFLSDCADRRSDDDGDGDGDSGECAYSRAVLVLDMVWNLAFVVVAAGVLLSTLRERPSTPLRLWLCGYAFECVLHMAFVYFEFRTGIRDSFSHTAYSIVKKLEPMNTLASSVWWIFGFYWIVVGDQALLEDSPRLYWLTVVFLAFDVFFIIFCIGMACIVFFALFCIIPIIALAYAMRIREGASEEDILSLPMYRFSQSNSLVMVDDNKKQLIKGRVDSCNGSHMSALSLHPDDSLKCIVQLLKDN*

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