Glyma03g27420 - SoyBase

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Report for Sequence Feature Glyma03g27420

Feature Type:	gene_model
Chromosome:	Gm03
Start:	35143170
stop:	35147343
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g27420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G05070	AT	Annotation by Michelle Graham. TAIR10: DHHC-type zinc finger family protein \| chr5:1496896-1498441 FORWARD LENGTH=413	SoyBase	E_val: 2.00E-161	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1311	KOG	DHHC-type Zn-finger proteins	JGI		ISS
PTHR22883	Panther	ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN	JGI		ISS
PF01529	PFAM	DHHC zinc finger domain	JGI		ISS
UniRef100_G7L4R2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Palmitoyltransferase PFA4 n=1 Tax=Medicago truncatula RepID=G7L4R2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N8L2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N8L2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g27420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g27420

Paralog	Evidence	Comments
Glyma19g30380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g27420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g119800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g27420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g27420

Limit To All Plant Sequences

>Glyma03g27420.3   sequence type=transcript   gene model=Glyma03g27420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGTTTCATGGGGAGAAGAGAGAGGGAGAGAGAGGGAGAGGGATGTGAAAAATGAGTTTGTAAGAAAGAAAAGAAGGAACGTAAGAAGGGAAATTCAATTCCCTTCTTGTTGTTCCCCTAGCACGGCCAATTGATCTTGCGGTGAGGGGCAATAATTAAAACACATGAAGCAAAAATCTTAACTCAATACAACGCAACACATGCATGTGAGTTTTTGCCAACAAACGTGATCATTGCCGCAACAACGAAGACTCAATATTATCATAGGCCATTATGTTCACCAACAACTCATACCTCCAAAATAACAACAACTTGGCCTCTCCCTACCCTTCTAGGGCCGTCTCAGTGGAATCTTCCAATGTCAAAAAAAGGCTTTACCAAGCTTGGAAAGGAAACAATAAATTTCTATGTGGTGGAAGATTAGTTTTTGGTCAGGATGCATCATCCCTTTTTCTAACGTCATTCCTGATTGGAGGTCCTGCAACAACATTTTGCATAAGAATGCTAGCATCACTAAAGGAAGAAGACCCTCACTTTAGCAACCCTGTACTAATTGGAGGAGTGATTCTCACAGTTTTGGTTGGATTTTATTTTTCTCTTCATGACATCTGGTAGAGATCCAGGAATTATCCCCAGAAATGCTCACCCACCTGAATTAGATGAGCCATTAGACATAAACACACCATCCATGGAATGGGTAAATAATAGGGCCCCTAATCTTAAGCTGCCCAGAGTGAAAGATGTTCTAGTCAATGGCCACACAGTGAAGGTGAAATTTTGTGATACTTGCTTGTTGTATCGTCCACCACGTGCTTCCCATTGTTCCATCTGTAATAATTGTGTTCAGAAGTTTGATCATCATTGTCCTTGGGTCGGTCAGTGTATTGGATCACGTAACTACCCATTCTTCATATTATTCATATCATCATCAACCTTGTTGTGTATATACGTGTTCGCATTTTCTTGGGTTAACATTCTTCGACAAGAAGGTAGATTATGGGTCAACATGTCACACGATATCATATCAGTTACTCTCATTGTATATTGCTTCATAGCTATTTGGTTTGTGGGAGGGCTAACAGTTTTTCATCTTTATTTGATTTCGACTAACCAGACAACTTATGAGAATTTTCGGTACCGCTACGATAAGAAGGAAAATCCATTCACAAAAGGAATATGGACAAACTTCAAAGAACTTTCTTGTGCTAAGATCCCAAGTAAATTAGTCAATTTTAGAGAATGGGTTACAATAGAGGATGATATTCAAGATGAATCCTATACTTCAGATCTTGAAAAAGGTTTTATATCCTCAAAACATAAATTTGATATGGAAATGGGAACAATTTATGGTAAGGATGGTATGCGAGTTCCTTCCATTTTGAAGGAATTGGATTACAATGGCATTGATGATGATATGAAGAAGGCAGGAGAAAAAGAAGGTGCATATGATATTTTTGTTCCTGCTGATCCATTGAAATCCAAAACTGGAGGAGCCAATGCTCATGAAGAGAAGCAGTAATTCCAGCTGGTTCTTTGAAGATCCATTTAGGCAAGTACTAAAAGGGAATATTTGTAGGCAGAGTGGATTCTAAGGTTAGAATGTTTATTTGCTTATGAATGGAGTGACATGAAAAAGGGTACAAGTGACTTGATTTATGATGGAAGTTGTAAAGTGAATGAAACAAATGAAATGCTCAATGGAAACTCAGGTACTTTCATTACTCAAAAAGGAGAAAACAAATGACAAGTTACAAAATTTGCACATGTTCACATATCAATACAAGACATATAAATGAATGAAGGAGCTAAATTAATGAAAATGATGAACAATGCCC

Coding sequences of Glyma03g27420

Limit To All Plant Sequences

>Glyma03g27420.2   sequence type=CDS   gene model=Glyma03g27420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCACCAACAACTCATACCTCCAAAATAACAACAACTTGGCCTCTCCCTACCCTTCTAGGGCCGTCTCAGTGGAATCTTCCAATGTCAAAAAAAGGCTTTACCAAGCTTGGAAAGGAAACAATAAATTTCTATGTGGTGGAAGATTAGTTTTTGGTCAGGATGCATCATCCCTTTTTCTAACGTCATTCCTGATTGGAGGTCCTGCAACAACATTTTGCATAAGAATGCTAGCATCACTAAAGGAAGAAGACCCTCACTTTAGCAACCCTGTACTAATTGGAGGAGTGATTCTCACAGTTTTGGATTTTATTTTTCTCTTCATGACATCTGGTAGAGATCCAGGAATTATCCCCAGAAATGCTCACCCACCTGAATTAGATGAGCCATTAGACATAAACACACCATCCATGGAATGGGTAAATAATAGGGCCCCTAATCTTAAGCTGCCCAGAGTGAAAGATGTTCTAGTCAATGGCCACACAGTGAAGGTGAAATTTTGTGATACTTGCTTGTTGTATCGTCCACCACGTGCTTCCCATTGTTCCATCTGTAATAATTGTGTTCAGAAGTTTGATCATCATTGTCCTTGGGTCGGTCAGTGTATTGGATCACGTAACTACCCATTCTTCATATTATTCATATCATCATCAACCTTGTTGTGTATATACGTGTTCGCATTTTCTTGGGTTAACATTCTTCGACAAGAAGGTAGATTATGGGTCAACATGTCACACGATATCATATCAGTTACTCTCATTGTATATTGCTTCATAGCTATTTGGTTTGTGGGAGGGCTAACAGTTTTTCATCTTTATTTGATTTCGACTAACCAGACAACTTATGAGAATTTTCGGTACCGCTACGATAAGAAGGAAAATCCATTCACAAAAGGAATATGGACAAACTTCAAAGAACTTTCTTGTGCTAAGATCCCAAGTAAATTAGTCAATTTTAGAGAATGGGTTACAATAGAGGATGATATTCAAGATGAATCCTATACTTCAGATCTTGAAAAAGGTTTTATATCCTCAAAACATAAATTTGATATGGAAATGGGAACAATTTATGGTAAGGATGGTATGCGAGTTCCTTCCATTTTGAAGGAATTGGATTACAATGGCATTGATGATGATATGAAGAAGGCAGGAGAAAAAGAAGGTGCATATGATATTTTTGTTCCTGCTGATCCATTGAAATCCAAAACTGGAGGAGCCAATGCTCATGAAGAGAAGCAGTAA

>Glyma03g27420.3   sequence type=CDS   gene model=Glyma03g27420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACATCTGGTAGAGATCCAGGAATTATCCCCAGAAATGCTCACCCACCTGAATTAGATGAGCCATTAGACATAAACACACCATCCATGGAATGGGTAAATAATAGGGCCCCTAATCTTAAGCTGCCCAGAGTGAAAGATGTTCTAGTCAATGGCCACACAGTGAAGGTGAAATTTTGTGATACTTGCTTGTTGTATCGTCCACCACGTGCTTCCCATTGTTCCATCTGTAATAATTGTGTTCAGAAGTTTGATCATCATTGTCCTTGGGTCGGTCAGTGTATTGGATCACGTAACTACCCATTCTTCATATTATTCATATCATCATCAACCTTGTTGTGTATATACGTGTTCGCATTTTCTTGGGTTAACATTCTTCGACAAGAAGGTAGATTATGGGTCAACATGTCACACGATATCATATCAGTTACTCTCATTGTATATTGCTTCATAGCTATTTGGTTTGTGGGAGGGCTAACAGTTTTTCATCTTTATTTGATTTCGACTAACCAGACAACTTATGAGAATTTTCGGTACCGCTACGATAAGAAGGAAAATCCATTCACAAAAGGAATATGGACAAACTTCAAAGAACTTTCTTGTGCTAAGATCCCAAGTAAATTAGTCAATTTTAGAGAATGGGTTACAATAGAGGATGATATTCAAGATGAATCCTATACTTCAGATCTTGAAAAAGGTTTTATATCCTCAAAACATAAATTTGATATGGAAATGGGAACAATTTATGGTAAGGATGGTATGCGAGTTCCTTCCATTTTGAAGGAATTGGATTACAATGGCATTGATGATGATATGAAGAAGGCAGGAGAAAAAGAAGGTGCATATGATATTTTTGTTCCTGCTGATCCATTGAAATCCAAAACTGGAGGAGCCAATGCTCATGAAGAGAAGCAGTAA

Predicted protein sequences of Glyma03g27420

Limit To All Plant Sequences

>Glyma03g27420.2   sequence type=predicted peptide   gene model=Glyma03g27420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFTNNSYLQNNNNLASPYPSRAVSVESSNVKKRLYQAWKGNNKFLCGGRLVFGQDASSLFLTSFLIGGPATTFCIRMLASLKEEDPHFSNPVLIGGVILTVLDFIFLFMTSGRDPGIIPRNAHPPELDEPLDINTPSMEWVNNRAPNLKLPRVKDVLVNGHTVKVKFCDTCLLYRPPRASHCSICNNCVQKFDHHCPWVGQCIGSRNYPFFILFISSSTLLCIYVFAFSWVNILRQEGRLWVNMSHDIISVTLIVYCFIAIWFVGGLTVFHLYLISTNQTTYENFRYRYDKKENPFTKGIWTNFKELSCAKIPSKLVNFREWVTIEDDIQDESYTSDLEKGFISSKHKFDMEMGTIYGKDGMRVPSILKELDYNGIDDDMKKAGEKEGAYDIFVPADPLKSKTGGANAHEEKQ*

>Glyma03g27420.3   sequence type=predicted peptide   gene model=Glyma03g27420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSGRDPGIIPRNAHPPELDEPLDINTPSMEWVNNRAPNLKLPRVKDVLVNGHTVKVKFCDTCLLYRPPRASHCSICNNCVQKFDHHCPWVGQCIGSRNYPFFILFISSSTLLCIYVFAFSWVNILRQEGRLWVNMSHDIISVTLIVYCFIAIWFVGGLTVFHLYLISTNQTTYENFRYRYDKKENPFTKGIWTNFKELSCAKIPSKLVNFREWVTIEDDIQDESYTSDLEKGFISSKHKFDMEMGTIYGKDGMRVPSILKELDYNGIDDDMKKAGEKEGAYDIFVPADPLKSKTGGANAHEEKQ*

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