Report for Sequence Feature Glyma03g27410
Feature Type: gene_model
Chromosome: Gm03
Start: 35110010
stop: 35117287
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g27410
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G56930 AT
Annotation by Michelle Graham. TAIR10: DHHC-type zinc finger family protein | chr3:21073805-21075873 FORWARD LENGTH=477
SoyBase E_val: 2.00E-158 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG1311
KOG
DHHC-type Zn-finger proteins
JGI ISS
PTHR22883 Panther
ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN
JGI ISS
PF01529 PFAM
DHHC zinc finger domain
JGI ISS
UniRef100_G7L4R1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Palmitoyltransferase AKR1 n=1 Tax=Medicago truncatula RepID=G7L4R1_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1JMX8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JMX8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma03g27410
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma03g27410
Paralog Evidence Comments
Glyma19g30360 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g27410 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g119700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g27410
Coding sequences of Glyma03g27410
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g27410.1 sequence type=CDS gene model=Glyma03g27410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTTGAGAATAGAAATCCGCAAATGGGGGATTCTCCTTCTGGCAATGCGGGTCACAGACAAAGAAGGCTCTATCAAGTTTGGAGGGGAGGCAACAAGTTTTTCTGTGGTGGGAGGCTGGTTTTTGGTCCGGATGTAGCTTCACTGTTTCTTACAACATTCCTAATTGCTGGACCTGCAATTGCATTTTGTGTAAAGATATATCTTAAAATCAAGAAGACCGATGATCTTATTCATGATTACTGGTTTCCTGTATTGATTGTGGGTTTAGTTCTCACTGTTTTGGATTTAGTGTTCCTCCTTTTGACTTCTGGGAGAGATCCTGGAATTGTCCCTAGAAACTCACGACCTCCTGAATTTGATGAGACATTTGATATACCTACCCCTTCCATGGAGTGGATTAATGGCACAACCCCTCATTTGAAACTACCTCGAACTAAAGATATTGTTGTTAATGGTCACATAGTGAAAGTAAAGTTCTGTAATACATGCTTGCTTTATCGTCCTCCTCGTACTTCTCATTGTTCTATATGCGACAATTGTGTCCAGAGATTTGATCATCACTGTCCCTGGGTTGGCCAGTGCATTGGAATACGAAACTATCGGTACTTCTTCATGTTTATTTCGACATCAACCATTTTGTGCATATATGTCTTCTCGTTCTCTTGTATCAATATTGCCCGCAGTGGTGTTTGGAGGACAATAACACATGATTATGTATCAGATTTTCTGATAGTATACTGCTTCATAGCTGTCTGGTTTGTTGGTGGCCTCACAGCTTTCCATTTCTATCTCATTTGTACAAATCAGACAACTTACGAGAACTTCCGAAATCAATATGATAAGAAGGGGAACCCATTCAATAGGGGATCATGCAGAAATCTGAAAGAAACACTTTGTTCCAGTATTCCCCATTCGAAGAATAATTTCCGATCATTTGTTGTGGAGGATGAACAGATGATGGTTGGGTCTCTGACTCCAAATACTGGGGATGGAATTTTGACCCCAAAGGAGAAAATTGATCTTGAAATGGGATCTATGCGTGCAGAAGATGGTCGTAGGCCTGTTCCTGAACTTCTGCGAAATTTTGATTTTGATAATTTTGATAGTGACATGAAGTTTGCAGATGATGACGGGCAGCCTTCTTTTGATCCATTCTACAGTATTGAGGATGATGTAAAAGACTCGGCCCGAACATCCATTCAAACAGTTTTGAATTTCCAAAGCATAACTGAAGATGTAATGGAAGAGTCTGTGCAAAGCTCCCATGCTGGAGGAAAAGTCAGAGAATCTACACAAAGGCACTTTCCTGCTGATGGAACATATACAATTAAGGAAACTGATGACAGGAATCATTCACATTAA
Predicted protein sequences of Glyma03g27410
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g27410.1 sequence type=predicted peptide gene model=Glyma03g27410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVENRNPQMGDSPSGNAGHRQRRLYQVWRGGNKFFCGGRLVFGPDVASLFLTTFLIAGPAIAFCVKIYLKIKKTDDLIHDYWFPVLIVGLVLTVLDLVFLLLTSGRDPGIVPRNSRPPEFDETFDIPTPSMEWINGTTPHLKLPRTKDIVVNGHIVKVKFCNTCLLYRPPRTSHCSICDNCVQRFDHHCPWVGQCIGIRNYRYFFMFISTSTILCIYVFSFSCINIARSGVWRTITHDYVSDFLIVYCFIAVWFVGGLTAFHFYLICTNQTTYENFRNQYDKKGNPFNRGSCRNLKETLCSSIPHSKNNFRSFVVEDEQMMVGSLTPNTGDGILTPKEKIDLEMGSMRAEDGRRPVPELLRNFDFDNFDSDMKFADDDGQPSFDPFYSIEDDVKDSARTSIQTVLNFQSITEDVMEESVQSSHAGGKVRESTQRHFPADGTYTIKETDDRNHSH*