SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G43280 | AT | Annotation by Michelle Graham. TAIR10: delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 | chr5:17367947-17369113 FORWARD LENGTH=278 | SoyBase | E_val: 9.00E-125 | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004300 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: enoyl-CoA hydratase activity | SoyBase | N/A | ISS |
| GO:0051750 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: delta3,5-delta2,4-dienoyl-CoA isomerase activity | SoyBase | N/A | ISS |
| KOG1681 | KOG | Enoyl-CoA isomerase | JGI | ISS | |
| PTHR11941 | Panther | ENOYL-COA HYDRATASE-RELATED | JGI | ISS | |
| PF00378 | PFAM | Enoyl-CoA hydratase/isomerase family | JGI | ISS | |
| UniRef100_C6TH01 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TH01_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G7JC24 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Medicago truncatula RepID=G7JC24_MEDTR | SoyBase | E_val: 8.00E-148 | ISS |
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Glyma03g27360 not represented in the dataset |
Glyma03g27360 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g119400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g27360.1 sequence type=CDS gene model=Glyma03g27360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGAGAAATACTCAAGCCTGGAAATTGTGGAGGAGAGCCCAAACTCGGGTGTGTTCTTTCTTATCTTAAATCGTCCGTCACGACGGAACGCTCTCTCGCGCGAATTCTTCAGCGAGTTCCCGAAAGCTCTGCACGCACTGGATCACAACCCGGAGGTGAAGGTGATCGTGTTGTCCGGCGCCGGGGACCACTTCTGCTCCGGCATCGACCTCTCCCTCCTGGGATCAACCGCCGCGAGTTCGGGTTCCTCCGGCTCCGGCGAAACCCTCCGGCGAGAGATAATGGCGATGCAAGACGCGGTCACGGCCCTGGAACGGTGCCGGAAGCCGGTGATCGCAAGCGTACATGGGGCGTGCATCGGCGGCGGAATTGATATAGTGACGGCGTGCGACATAAGGATGTGCAGCGAGGAGGCGTTTTTCTCGGTGAAGGAAGTGGATTTGGCCCTTGCCGCTGACCTTGGCACTCTTCAGAGGTTGCCGCTTATTGTAGGGTTCGGCAACGCCATGGAATTGGCTTTGACCGGTCGCACTTTTTCCGGTAAGGAGGCTAAGGAGTTGGGTCTCGTTTCTCGCGTTTTCCTTTCCAAACATGACCTCCATCAGGCCGTCCGAGATGTTGCTCAAGCAATTGCGACCAAGTCTCCCCTTGCAGTTGTTGGGACAAAAACAGTGTTGCTTAAAAGTAGGGACTTAACTGTGGATCAGGGGTTGGATTATGTTGCAACCTTGAATTCTGCCAGATTGCTATCCCCTGACTTAACTGAAGCAGTGATGGCACAGAAGCAGAAACGAAAGCCAGTTTTTTCCAAGCTCTGA
>Glyma03g27360.1 sequence type=predicted peptide gene model=Glyma03g27360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEKYSSLEIVEESPNSGVFFLILNRPSRRNALSREFFSEFPKALHALDHNPEVKVIVLSGAGDHFCSGIDLSLLGSTAASSGSSGSGETLRREIMAMQDAVTALERCRKPVIASVHGACIGGGIDIVTACDIRMCSEEAFFSVKEVDLALAADLGTLQRLPLIVGFGNAMELALTGRTFSGKEAKELGLVSRVFLSKHDLHQAVRDVAQAIATKSPLAVVGTKTVLLKSRDLTVDQGLDYVATLNSARLLSPDLTEAVMAQKQKRKPVFSKL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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