Glyma03g27290 - SoyBase

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Report for Sequence Feature Glyma03g27290

Feature Type:	gene_model
Chromosome:	Gm03
Start:	34977900
stop:	34980034
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g27290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G41060	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr2:17127138-17128493 FORWARD LENGTH=451	SoyBase	E_val: 2.00E-155	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0008219	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell death	SoyBase	N/A	ISS
GO:0009693	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0010150	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf senescence	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG4205	KOG	RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1	JGI		ISS
PTHR24011	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24011:SF5	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_I1JMX0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JMX0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8LLE6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding protein AKIP1 n=1 Tax=Vicia faba RepID=Q8LLE6_VICFA	SoyBase	E_val: 3.00E-171	ISS

Expression Patterns of Glyma03g27290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g27290

Paralog	Evidence	Comments
Glyma19g30251	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g27290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g118800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g27290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g27290

Limit To All Plant Sequences

>Glyma03g27290.2   sequence type=CDS   gene model=Glyma03g27290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGCCGATGGGGAGGAAGCGAAAGGTAGCACCCAAATCTTCTCTATCCACCGAGCCACCTCTCAAGCAGCAACAACCAAAACCCGAAAATCCCCCTCAAGAATACGAAGAAGTCGAAGAGGAAGTTGAGGAAGAAGAGGTAGAGGAAGAGGTCGAAGAGGAAGAAGAAGAAGAAGAGGAGGACGAGGAAGAAGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAAACGACGTCGTCAAACAACAGCAGCAGCAACAGCAAGACGAAGACGACATCCCGATATCGAAACTTCTGGAACCGTTGGGCAAGGACCAGCTTCTGAACCTTCTTTGCGACGCGGCGGCGAAGCACCGCGATGTGGAGGAGAGGATCCGAAAGGCGGCGGATGGAGATCCGGTGCACCGGAAGATATTTGTCCACGGATTGGGCTGGGACACTACCGCCGGAACCCTAATTAGCGCGTTCCGGCAGTACGGAGAGATCGAGGACTGCAAGGCCGTCACCGACAAGGTCTCCGGCAAGTCCAAGGGCTACGGCTTCATCCTCTTCAAGACGCGCCGCGGCGCGCAAAACGCGCTCAAGGAGCCGCAGAAGAAGATCGGCAACCGCATGACAGCGTGCCAGCTGGCATCCATCGGACCGGTTAGCAACCCGCCGCCGACGCCGATGGCGCCTTCAGCGGCTCCGTCGTCGTCGGTTTCGGAGTACACACAGAAGAAGATCTACGTGAGCAACGTCGGTGCGGACCTGGATCCGCAGAAGCTTCTCGCGTTTTTTTCACGGTTCGGGGAGATTGAGGAAGGGCCGTTGGGGCTTGACAAGGCCACCGGAAAACCTAAGGGGTTCTGTTTGTTTGTTTACAGGAATCCGGAGAGTGCGAGGAGAGCGTTGGAAGAGCCTCATAAGGATTTCGAAGGGCACATTTTGCATTGCCAGAAGGCGATTGATGGGCCCAAGGCCGGGAAATTTCAACAGCAGCAGCAGCACGGGAATGTTAATGCGCACGCCCAGCGGGCCCAGTTTCAGAGGAATAGTAATGTTGGTGCTAATGCTGCTGCGGGTTATGGTGGTGGTGGTTCGGCGGTGCAGCCGGGGCACTTGATGGCGCCGGCTGGGCCGGGGATTGGGTTTAATCCGTCGGCTGCTGCAGCTGCGCAGGCTGCGTTGAATCCGGCAATGGCACAGGCGTTGACGGCCCTGCTGGCGTCACAGGGGACGTTGGGGCTGACGAATTTGTTGGGGAGTATTGGAACGAGTGCTGCGGTGAACCCTGGTGTGCCTGCTGCAGGGTCTGCGGTGCAGGGTGGTGGTTATAGTGCTCAGCCGAATATAAGTCCCGGTGTTGTTGGAGGATATGGGAATCAGGTGGGGTTACAGGCTGCGTATCCGAATCAGAATCAGCAGATAGGGCAGGGTGGATCTGGAAGAGGGCAGTATGGTGGTGGAGCTGCGCCCTACATGGGGCACTAG

Predicted protein sequences of Glyma03g27290

Limit To All Plant Sequences

>Glyma03g27290.2   sequence type=predicted peptide   gene model=Glyma03g27290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPPMGRKRKVAPKSSLSTEPPLKQQQPKPENPPQEYEEVEEEVEEEEVEEEVEEEEEEEEEDEEEEEEEEEEEEENDVVKQQQQQQQDEDDIPISKLLEPLGKDQLLNLLCDAAAKHRDVEERIRKAADGDPVHRKIFVHGLGWDTTAGTLISAFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGAQNALKEPQKKIGNRMTACQLASIGPVSNPPPTPMAPSAAPSSSVSEYTQKKIYVSNVGADLDPQKLLAFFSRFGEIEEGPLGLDKATGKPKGFCLFVYRNPESARRALEEPHKDFEGHILHCQKAIDGPKAGKFQQQQQHGNVNAHAQRAQFQRNSNVGANAAAGYGGGGSAVQPGHLMAPAGPGIGFNPSAAAAAQAALNPAMAQALTALLASQGTLGLTNLLGSIGTSAAVNPGVPAAGSAVQGGGYSAQPNISPGVVGGYGNQVGLQAAYPNQNQQIGQGGSGRGQYGGGAAPYMGH*

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