SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G02080 | AT | Annotation by Michelle Graham. TAIR10: transcription regulators | chr1:373694-386682 FORWARD LENGTH=2377 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| KOG1831 | KOG | Negative regulator of transcription | JGI | ISS | |
| PTHR13162 | Panther | CCR4-NOT TRANSCRIPTION COMPLEX | JGI | ISS | |
| PF04054 | PFAM | CCR4-Not complex component, Not1 | JGI | ISS | |
| UniRef100_G7LAR6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CCR4-NOT transcription complex subunit n=1 Tax=Medicago truncatula RepID=G7LAR6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JMW9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JMW9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g27270 not represented in the dataset |
Glyma03g27270 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g14770 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g118400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g27270.1 sequence type=CDS gene model=Glyma03g27270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAAGCCTAGTCCCATGCCATGCATCCGATCGAATGACAGCAAAAGTAACCTTCTTCTTCTCACTCAAATCTCACGCAGTCTCTGTTCCAATTTCAGCTTCCCTATGATGACTCATTATCATTCCTTGCCCACCATGGCCAACACTTCCTCCAACCATATTCGCTTTCTCCTCAGCACCTTGAACGAAGTCAACTTTGACTCCGTTTTCCATCAACTCTCTCAGTTCACGGAATTTGGAACTACTGGATGCATTTTGCTGCTTCAAACTTGCTTGGATCACTATGGTTATGTCAGAAGAGATATGAAAGATGTGCAGCATGAACCAATTCTTGGGGCAGTCATTAAGCACCTCTTGGACAAACCAAACTTCAGCACAGTGTTTTCTGAGTCAATGAAGAATATAGAAATTAATGAAAGCTTTTTAGAAAGTTTTTGCAATGGATTGCAGTTATCTTTATTGGAAAAAATTATAAGCAGTCTTGCTTTATCTGATTCTGAGAATTCCGATGTCAGGCTGTGTGGCAAAATTTTTTGCATGGCTCAAATTGAGGAATTGTGTGCCAACCCCGGTTATCTGAGTTTCCATGAGCAAATTCACAATGTTATCATGTTCCTAAAGCAGTCTGAGGGTCTTTCCAAGCACGTGGATTCCTTTATGCAGATATTGTCACTTGTGCAGTTCAAAGACACACCACCTTTTGTCTTGACTCCATTGCTTCCTGATGAGATGCATGAGGCTGATTTTTTAAGGAATATGGAGTTGTTCCATGACAGTGGAGAAAATGATTTTGATGCTATTTTGGCTGACATACAGAAGGAAATGAACATGGGTGATATCGTGAAGGAACTAGGCTATGGATGCACGGTGGATGTCTCACAGTGCAAGGAAATATTTTCACTCTTCTTACCTTTAACTGAAAATACACTCTCTAAATTGCTTGGTGCTATTGCTTGTACCCATATTGGGCTGGAGGACAACCAAAACACATACTTAACTTTTCGTGCAGCCCATGGATACAATGTGCCTGAGTTGCCACCGCTGAACTCTTGGAATATTGATGTCTTGATTGATACACTTAAGCATCTTGCACCTCATACTAATTGGGTACGTGTTATTGAAAACCTTGATCATGAAGGGTTTTTTCTTCCTAGTGAAGAAGCGTTCTCTTTTCTCATGTCTGTATATAAGCATGCCTGTAAGGAACCATTTCCTCTCCATGCCATCTGTGGGCCAGTCTGGAAGAATACTGAGGGTCAGCTGTCTTTCCTTAAATATGCTGTATCAGCACCACCGGAAATTTTTACCTTTGCACACTCGGGAAGGCAGCTGGCATATGTTGATGCAATTAATGGCCACAAGCTTCAAAATGGACATGCAAATCATGCATGGCTGTGTCTTGATCTTTTAGATGTCCTCTGCCAGCTAGCTGAAAAGGGTCATGCCAGTATTGTTCGATCAATCTTTGATTATCCCCTTAAACACTGTCCTGAAGTTTTGCTTCTTGGGCTGGCACATATTAATACTGCCTACAACCTCTTGCAGCAGGAAGTATCTCTGATTGTTTTTCTCATGATTGTAAAAAGTGGTGTAGGCAGTGGGATGATTCTACACCTTTGGCATGTTAATCCCAATCTGGTATTGAGAGGGTTTGTTGATTCTCAAAACAATGATGCAGACAGCATTGTAAGAATTGTGGACATCTGCCAGGAGCTAAAGATTCTATCATCTGTGGTGGAAATCATGCCCTCTTATTATAGTATAAGGTTAGCAGCTGTAGCATCAAGAAAAGAATTTCTTGACCTTGAGAAGTGGTTGAGTAGCAACTTAACTACATACAAGGAAGCCTTTTTTGAGGAGTGCCTCAAGTTCTTAAAGGATTCCCATTTTGGTGGATCACAGAACCTTTCTGGCAAATCGTTTCATCAGTCTGGTGCTATTCTGAGTCTATATGCTGAGGCAGCTGCTACCATCTTGAAGGTTCTTAAATCTCACACCGACTTGGTTGCTTCTAGACAACTTTCTGAGGAGTTGGAGAGACTGCACGTATCTATTATAGATACGAATCCAAGGCTTCAAAATGGTGGGACAGCTGATTCATCTACTTCTGATGGATATGCGGATGACATTGAAGCTGAAGCAAACTCTTACTTCCATCAAATGTTTTCTGATCAGTTAACCATTAATGCAATGGTACAGATGCTCGCTCGATTCAAGGAATCTTCAGTGAAGAGGGAGAAATCAATTTTTGAATGCATGATTGCAAACTTGTTTGAGGAGTATAGATTTTTCCCAAAGTATCCTGAAAGGCAACTCAAAATTGCTGCAGTTCTCTTTGGTTCTGTGATCAAGCATCAGCTTGTAACTCATCTATCTTTGGGGATTGCTCTTCGTTATGTTCTTGATGCATTGCGCAAGCCTGCAGATTCGAAAATGTTTTTGTTTGGAAGTCTGGCATTGGAACAGTTTGTGGATCGTCTTATTGAGTGGCCTCAGTATTGCAATCATATTCTTCAAATTTCTCATTTGCGCAGTACACATTCAGAAATAGTTTCTTTCATTGAGCAGGCTCTCGCCAGGATTTCCTCTGGTCATTTGGATGTTGATGGGGCGAGTCATGCTTCTGTTATTAGTAACCATCATTCTGCACAGGCTACAATAGGACATGTGGAGCTCAGTGGCTCTAGTGTTATACAACCTGGGCAGCAACATTTGTCACTGCAGCTTCAACAGAGACGTGAAAATCCCTTGGATGATCGTCACAAAGCTTCTGTTGGTTCATCTACTGATGTAAAGCCATTGTTATCTTCTCTAGGGAAATCTTCAGTACTAACACCTACCGATGCTTCTAGTACCAATAAGTTACATAGCACAGTTAGCACTTCGTCAATGCTATCTTCATCTTCTCCTGGTTTTGTTCGTCCTTCCCGTGGAACTACTTCTGCCAGGTTTGGATCTGCCTTGAACATTGAAACTTTGGTTGCTGCTGCTGAGAAAAGAGAAATTCCTATTGAGGCTCCGGGGTCAGAGGTTCAGGACAAAATATTATTTATTATTAATAATGTTTCGGCTGCTAATGTTGAAGCTAAAGCAAAAGAGTTCACTGAAATTTTGAAAGAGCAGTACTATCCTTGGTTTGCACAGTATATGGTTATGAAAAGAGCAAGCATTGAGCCAAATTTCCATGACTTGTACTTGAAATTCCTGGATAAAGTTAATTCAAAGGCTTTGAACAAAGAGATTGTCCAGGCAACTTATGAAAATTGCAAGGTTCTCTTAGGATCAGAGCTCATAAAATCAAGTTCAGAGGAACGCTCTTTGCTTAAAAATTTGGGGAGCTGGCTTGGAAAGTTAACAATTGGCCGGAATCAGGTTTTGAGGGCTCGTGAAATAGACCCAAAGTCTTTGATTATGGAGGCATATGAGAAGGGGCTAATGATTGCTGTTATTCCATTTACGTCAAAGGTCCTTGAACCATGCCTAAACAGTCTTGCATATCAACCTCCTAATCCTTGGACTATGGGCATTTTGGGATTGCTTGCTGAGATTTATTCAATGCCAAACTTGAAAATGAACCTCAAGTTTGACATAGAGGTTTTATTCAAAAATCTGGGTGTTGATATGAAGGATGTCACACCAACCTCTCTCCTGAAGGATAGAAAAAGAGAATTTGAAGGAAATCCTGATTTCTCTAATAAAGATGTTGGGGGATCTCAATCACAAATGATTACTGATATAAAATCTGGCCTCGTACCTCCAGTAAATCAAGTGGAATTACCACTTGAAGTCACCAATCCATCCAACACGGGGGCTCATCCACATATACTCTCTCAGTATGCCGGGCCTCTTCATATTTCCTCGGGAGCATTGATGGAAGATGAAAAGGTTACACCTCTGGGATTGTCTGATTCACTTCCCTCTGCTCAAGGACTGTTACAAGCAAATCCTGGCCCAGTTCCTTTTTCTATTAGCCAGATTCCAACACAGATACCTAATATTGGGACTCACGTTATTATCAATCAAAAGCTCAGTGGTTTTGGGCTGCAAATGCATTTTCAGAGAGCTGTACCAATTGCAATGGATAGAGCTATCAAAGAGATAGTGTCTAGTATTGTGCAGCGTAGTGTTTCCATAGCAACACAAACAACCAAGGAGCTTGTTTTAAAGGACTATGCCATGGAATCTGATGAGACACGCATATTAAATGCGGCACACTTGATGGTCGCTAGTCTGGCTGGAAGTTTGGCTCATGTTACGTGCAAAGAACCATTACGGGCATCAATATCTGGCCAACTGAGGACTTCACTTCAGAACTTAAATATTGCTAATGAAATTTTGGAGCAAGCTGTGCAACTTGTCACCAATGATAATCTTGATCTAGGCTGTGCAGTCATTGAACAGGCTGCTACCGATAAGGCAATAAACACCATTGATACAGAGATTGGTCAACAACTCTCTTTGAGAAGGAAGCATCGAGAAGGTATGGGTTCTACATTTTTTGATGCAAATTTGTATCCTCAAGGTTCTATGGGTGGTGTTCCAGAGCCTCTTCGCCCCAAGCCTGGTCAGTTGTCCCTCTCACAACAACGTGTCTATGAGGACTTTGTTCGGCTTCCCTGGCAAAGCCAGTCTAGCCCGAGCTCACATTCTATGTCTTCTGGTGTTGCTGTTCAATCTGGCACTGGTCTTACTGGCACCAATGGTTCTGTATCAGGGCAGAGTAACCCTGGATACCCTGTCACCACAGGTTATGAAGGAGTATCTCGACCATTAGATGATATGACAGAATCAAATTTGGCTCCACATTTTAGTGCTTCCTCAATTAACATTAGAGCAGCTGACAGTGTTTCCCAGCATAGTTTGGAGAAAGACTCTGTTGCCTCATTTCCTTCAGCTGCTTCCACCCCTGAATTGCATGCAGTAGATTCTTCTGAAGTGAAAGAATCTGGAACTTCTTCACAGCCACTGGTTACATCAGGTGCTGTGGAGCGCCTTGGAAGTAGTTTTTTGGAGCCTTCTCTCACAACAAGAGATGCCCTAGATAAATTCCAAATTGTTGCACAAAAGTTGGAAGCTATGGTCAGCAATGATTCCAGGGATGGAGAAATACAGGGTGTCATTTCTGAGGTTCCTGAGATCATACTTAGATGTGTTAGTCGAGACGAGGCAGCTTTAGCTGTGGCTCAAAAGGTTTTCAGGGGTTTGTATGATAATGCATCAAACAACATTCATGTCACTGCTCATCTTGCTATCCTAACTGCCATTCGTGATGTTTGCAAGCTTGCTGTCAAGGAGCTTACTAGTTGGGTAATTTACTCGGAAGAAGAAAGGAAATATAACAAAGAAATTACTGTTGGCCTCATCCGTAGCGAATTGCTAAATCTTACTGAGTACAATGTTCATATGGCCAAACTTATTGATGGAGGAAGGAACAAGGCTGCAATGGAATTTTCCATTTCCCTTCTTCAAACTCTGGTTGTTGAGGAACCTAAAGTTATTTCAGAACTTCACAATCTTGTTGATGCTTTGGCAAAGCTTGCTACAAAGCCTGGATGCCCTGAGTCATTACCACAGCTTCTTGAAATGATCAAGAATCCTGGTGCTATATCCTCTAGTAATGCTGGAAAGGAGGATAAGGCAAGACAATCAAGAGACATTAAGGTGCCTGGTCTGTTACCTGCAAATAGGGAAGAGTTCAACAGCATTGATTCTATTGAACCAGATCCTGCTGGGTTCCGGGAGCAGGTTTCCATGTTGTTTACAGAATGGTATAGGATATGTGAACTTCCTGGTGCCAATGATACAGCTTTTGCCCACTTTATCTTACAATTGCATCAGAATGGACTACTTAAGGGAGATGATCTTACGGATCGCTTTTTCCGACTATTGACGGAACTAGCTGTTGCACATTGCTTATCCACTGAGATGATTAATTCAGGGTCACTGCAATCTCAACCGCAGCAGACAATGTCATTTCTTGCAATTGATATTTATGCAAAGCTTGTCTTCTCAATCTTGAAGGGATCAAACAAACTCTTTCTTCTTTCCAAGATTCTGGCAGTTACTGTCAGATTCATTATAAAAGATGCAGAGGAGAAGAAGGCCTCTTTTAATCCAAGGCCACTTTTCAGATTATTCATCAACTGGCTTCTGGATCTTGGTTCACTTGAGCCTGTTACTGATGGTGCAAACCTTCAGATTTTAACTGGTTTTGCCAATGCATTTCATGCTTTGCAGCCCCTCAAAGTTCCTGCATTCAGTTTTGCATGGCTTGAGTTGATTAGTCACAGGAGCTTCATGCCAAAAATGTTGACTGGTAATGGTCAAAAAGGTTGGCCTTATATCCAAAGGTTGCTTGTAGATCTGTTCCAATTTATGGAGCCTTTTCTGAGGCATGCTGAACTTGGAGAACCGGTTCGTGTCCTCTATAAAGGCACACTTAGGGTGCTCTTAGTGCTACTTCATGACTTCCCGGAGTTTCTCTGTGATTATCACTTTACCTTTTGTGATGTTATTCCTCCAAGTTGCATACAGATGAGGAATATCATTCTAAGTGCATTTCCGCGCAGTATGAGGCTGCCAGACCCATCTACTCCTAATTTGAAGATAGATTTGCTTCAGGAAATAACCCAATCGCCTCGCATTCTTTCTGAGGTTGATGCAGCACTTAAAGCAAAGCAGATGAAGGCTGATGTAGATGAATACCTTAAGACAAGACAACAGAGTTCGCCATTTTTATCTGAACTGAAGGATAAGATGCTTCTCTCACCCAATGAAGCAGCCTCTGCTGGGACTCGATACAATGTGCCGTTAATTAACTCCCTTGTGCTATATGTTGGAATGCAGGCAATCCATCAGCTCCAGGGACGAACTCCCCATACACAAACGTCAGCAAATGCTTTCCCCTTAGCCGTATTTTCTGTTGGTGCTGCATTGGATATTTTCCAGACACTAATTGTGGACTTGGACACTGAAGGGCGCTACCTTTTCCTAAATGCTATTGCCAACCAACTGCGTTATCCTAATACTAATACACACTACTTTTCCTTCATCCTTCTGTACTTGTTTGCAGAATCAAACCAGGAAGTTATCCAAGAACAAATTACTAGAGTCTTGTTAGAACGCCTAATTGTTAACCGTCCTCATCCCTGGGGTCTCCTCATTACTTTTATTGAGCTGATTAAGAATCCTAGGTACAATTTCTGGAACCGGAGTTTCATAAGATGTGCGCCAGAGATTGAAAAACTTTTTGAATCGGTGTCAAGATCTTGTGGAGGTCCAAAACCAGTGGATGATAGCATGGTTTCGGGTTGGGTCTGA
>Glyma03g27270.1 sequence type=predicted peptide gene model=Glyma03g27270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGKPSPMPCIRSNDSKSNLLLLTQISRSLCSNFSFPMMTHYHSLPTMANTSSNHIRFLLSTLNEVNFDSVFHQLSQFTEFGTTGCILLLQTCLDHYGYVRRDMKDVQHEPILGAVIKHLLDKPNFSTVFSESMKNIEINESFLESFCNGLQLSLLEKIISSLALSDSENSDVRLCGKIFCMAQIEELCANPGYLSFHEQIHNVIMFLKQSEGLSKHVDSFMQILSLVQFKDTPPFVLTPLLPDEMHEADFLRNMELFHDSGENDFDAILADIQKEMNMGDIVKELGYGCTVDVSQCKEIFSLFLPLTENTLSKLLGAIACTHIGLEDNQNTYLTFRAAHGYNVPELPPLNSWNIDVLIDTLKHLAPHTNWVRVIENLDHEGFFLPSEEAFSFLMSVYKHACKEPFPLHAICGPVWKNTEGQLSFLKYAVSAPPEIFTFAHSGRQLAYVDAINGHKLQNGHANHAWLCLDLLDVLCQLAEKGHASIVRSIFDYPLKHCPEVLLLGLAHINTAYNLLQQEVSLIVFLMIVKSGVGSGMILHLWHVNPNLVLRGFVDSQNNDADSIVRIVDICQELKILSSVVEIMPSYYSIRLAAVASRKEFLDLEKWLSSNLTTYKEAFFEECLKFLKDSHFGGSQNLSGKSFHQSGAILSLYAEAAATILKVLKSHTDLVASRQLSEELERLHVSIIDTNPRLQNGGTADSSTSDGYADDIEAEANSYFHQMFSDQLTINAMVQMLARFKESSVKREKSIFECMIANLFEEYRFFPKYPERQLKIAAVLFGSVIKHQLVTHLSLGIALRYVLDALRKPADSKMFLFGSLALEQFVDRLIEWPQYCNHILQISHLRSTHSEIVSFIEQALARISSGHLDVDGASHASVISNHHSAQATIGHVELSGSSVIQPGQQHLSLQLQQRRENPLDDRHKASVGSSTDVKPLLSSLGKSSVLTPTDASSTNKLHSTVSTSSMLSSSSPGFVRPSRGTTSARFGSALNIETLVAAAEKREIPIEAPGSEVQDKILFIINNVSAANVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIMEAYEKGLMIAVIPFTSKVLEPCLNSLAYQPPNPWTMGILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDVTPTSLLKDRKREFEGNPDFSNKDVGGSQSQMITDIKSGLVPPVNQVELPLEVTNPSNTGAHPHILSQYAGPLHISSGALMEDEKVTPLGLSDSLPSAQGLLQANPGPVPFSISQIPTQIPNIGTHVIINQKLSGFGLQMHFQRAVPIAMDRAIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRILNAAHLMVASLAGSLAHVTCKEPLRASISGQLRTSLQNLNIANEILEQAVQLVTNDNLDLGCAVIEQAATDKAINTIDTEIGQQLSLRRKHREGMGSTFFDANLYPQGSMGGVPEPLRPKPGQLSLSQQRVYEDFVRLPWQSQSSPSSHSMSSGVAVQSGTGLTGTNGSVSGQSNPGYPVTTGYEGVSRPLDDMTESNLAPHFSASSINIRAADSVSQHSLEKDSVASFPSAASTPELHAVDSSEVKESGTSSQPLVTSGAVERLGSSFLEPSLTTRDALDKFQIVAQKLEAMVSNDSRDGEIQGVISEVPEIILRCVSRDEAALAVAQKVFRGLYDNASNNIHVTAHLAILTAIRDVCKLAVKELTSWVIYSEEERKYNKEITVGLIRSELLNLTEYNVHMAKLIDGGRNKAAMEFSISLLQTLVVEEPKVISELHNLVDALAKLATKPGCPESLPQLLEMIKNPGAISSSNAGKEDKARQSRDIKVPGLLPANREEFNSIDSIEPDPAGFREQVSMLFTEWYRICELPGANDTAFAHFILQLHQNGLLKGDDLTDRFFRLLTELAVAHCLSTEMINSGSLQSQPQQTMSFLAIDIYAKLVFSILKGSNKLFLLSKILAVTVRFIIKDAEEKKASFNPRPLFRLFINWLLDLGSLEPVTDGANLQILTGFANAFHALQPLKVPAFSFAWLELISHRSFMPKMLTGNGQKGWPYIQRLLVDLFQFMEPFLRHAELGEPVRVLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRSMRLPDPSTPNLKIDLLQEITQSPRILSEVDAALKAKQMKADVDEYLKTRQQSSPFLSELKDKMLLSPNEAASAGTRYNVPLINSLVLYVGMQAIHQLQGRTPHTQTSANAFPLAVFSVGAALDIFQTLIVDLDTEGRYLFLNAIANQLRYPNTNTHYFSFILLYLFAESNQEVIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVSRSCGGPKPVDDSMVSGWV*
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