SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G60510 | AT | Annotation by Michelle Graham. TAIR10: ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr3:22357141-22360003 REVERSE LENGTH=426 | SoyBase | E_val: 0 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| KOG1684 | KOG | Enoyl-CoA hydratase | JGI | ISS | |
| PTHR11941 | Panther | ENOYL-COA HYDRATASE-RELATED | JGI | ISS | |
| PTHR11941:SF19 | Panther | 3-HYDROXYACYL-COA DEHYDROGENASE | JGI | ISS | |
| PF00378 | PFAM | Enoyl-CoA hydratase/isomerase family | JGI | ISS | |
| UniRef100_G7LBK0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 3-hydroxyisobutyryl-CoA hydrolase-like protein n=1 Tax=Medicago truncatula RepID=G7LBK0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JMV5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JMV5_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma03g27150 not represented in the dataset |
Glyma03g27150 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g117300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g27150.2 sequence type=transcript gene model=Glyma03g27150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGGCTGTTTATGCTGAACAAAGAATAGAAGAGAGAAGTGAGACGCTGAGAGTGTGAAGTGCAGAGGGAAAAGCAAAGGGATGATGATGCAGAGCAAAAGGGCAGGGTGGTGGTTGCTCAGAAAGGCAAAGGCAAAGCTGAGTCTTAACACTGACCGAAACCTCTCTTCTTCTCAACACCTCATTCTCGACAACCCCAATCTCAATCAGGTTTTGGTCGAAGGAAATGGTTTCTCCAGAATGGCCATTCTCAATAGACCCTCTGCTCTCAATGCTCTCAACACCAATATGGCGGCTACACTGCATAAACTTTATAGGAGCTGGGAAGAGGACCCTGATATTGGTTTTGTGATGCTCAAGGGCAGCGGCCGAGCATTTGCAGCTGGTGGAGATATTGTTGCGCTTTACCATTTGATAAACAAAGGGAACTTGGAAGCCTGTAAAGAATTTTTTAGAACGGCATATAGTTTTATGTACCTGATAGGTACATATTTGAAGCCACATGTTGCTCTTCTGAATGGCATTACCATGGGTGGTGGGGCTGGAATTTCAATCCCTGGGACATTTCGAGTTGCAACAGACAAAACTATTTTTGCTACCCCTGAAGTTCTTATTGGATTCCACCCTGATGCTGCAGCATCTTTTTACCTTTCACATTTACCTGGTCAATTAGGAGAATACTTGGCTCTGACTGGGGAAAAGCTCAACGGAGTAGAGATGGTTGCTTGTGGGCTTGCTACACACTATTCATCAAGTGCAAGGCTTCCTTTAATCGAAGAACAACTGGGGAAATTGGTTACTGATGACCCGTCTGTCATTGAAACTACTTTAGAACAGTATGGTGAGATCGTACATCTAGACAGCAGTAGCGTACTACAAAGGATTGAAGTTCTAGATAAATGCTTTTGCCATGACACAGTTGAAGAGATTGTTGATGCGATGGAAAATGCGGCAAGTGAAACAAATGATGCATGGTGCATTTCTACCCTAAATAAACTCAAAGAAGCTTCTCCATTGAGCTTGAAGGTTGCTTTGAGATCTATACGGGAAGGTAGATTTCAGACACTTGATCAATGCTTGTTGCGTGAGTACCGTATGACTTTACAAGCAATTCATAGGCAGATATCTGGGGACTTTTGTGAGGGAGTGAGGGCACGCGTGGTGGACAAGGACTTTGCACCAAAGTGGGATCCTCCAACCTTGGAAAAGGTGTCTCAAGATATGGTGGATCACTACTTCTTACCTCTGAGTGAATCTGAACCTGATCTAGAGCTGCCCACAAACAATCGTGAAGCATTTTTGTAGATTCCCTTGGACAACTAGTGTGTTTGTTAAACTGTTCAATTTCCGCCAAACGTGAATCCATCAAATTTCTACGGTCACGGTTAATTTCTCGAAACGTGTGTAACAGTTGTTGAAACGGTTAAACTAAGACACACACACTAAATATACACCATTAGTATTTTGTCAGGGCAATGGTCAAGCTTGTACCCATTCCTAAATCTCGAATTCGGTGCCTCTCCAGTAACTAGAAGCACCTGGTGAACCCCACAAGAGTGTTGTGTCTTTCTTTTTCCTATTGGTGGCTTCTAGTAAATGAAGAAGATCTTAATTGCTAACTCTCATAGTAGCTTCTAGTGGTTTTTTTTTATAGGTAGGAATCAAAGATAGTATTTAAGGATTTATAACAATCATATATCCTGTTCAATTGACTAAATTAGATTTTTTGGTGCTTCCGGTGGTTTCCAACAATAGTGTGTAGCTTGTACCACCTTTGGATTATGAAAAAACTTTCTTTACTCTTTGGCAGAAGGAATAACAACACTTTAACAATTCTAAATGTATGTTTTCCAGAAATTTTGGAGTTGATGTG >Glyma03g27150.3 sequence type=transcript gene model=Glyma03g27150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGGCTGTTTATGCTGAACAAAGAATAGAAGAGAGAAGTGAGACGCTGAGAGTGTGAAGTGCAGAGGGAAAAGCAAAGGGATGATGATGCAGAGCAAAAGGGCAGGGTGGTGGTTGCTCAGAAAGGCAAAGGCAAAGCTGAGTCTTAACACTGACCGAAACCTCTCTTCTTCTCAACACCTCATTCTCGACAACCCCAATCTCAATCAGGTTTTGGTCGAAGGAAATGGTTTCTCCAGAATGGCCATTCTCAATAGACCCTCTGCTCTCAATGCTCTCAACACCAATATGGCGGCTACACTGCATAAACTTTATAGGAGCTGGGAAGAGGACCCTGATATTGGTTTTGTGATGCTCAAGGGCAGCGGCCGAGCATTTGCAGCTGGTGGAGATATTGTTGCGCTTTACCATTTGATAAACAAAGGGAACTTGGAAGCCTGTAAAGAATTTTTTAGAACGGCATATAGTTTTATGTACCTGATAGGTACATATTTGAAGCCACATGTTGCTCTTCTGAATGGCATTACCATGGGTGGTGGGGCTGGAATTTCAATCCCTGGGACATTTCGAGTTGCAACAGACAAAACTATTTTTGCTACCCCTGAAGTTCTTATTGGATTCCACCCTGATGCTGCAGCATCTTTTTACCTTTCACATTTACCTGGTCAATTAGGAGAATACTTGGCTCTGACTGGGGAAAAGCTCAACGGAGTAGAGATGGTTGCTTGTGGGCTTGCTACACACTATTCATCAAGTGCAAGGCTTCCTTTAATCGAAGAACAACTGGGGAAATTGGTTACTGATGACCCGTCTGTCATTGAAACTACTTTAGAACAGTATGGTGAGATCGTACATCTAGACAGCAGTAGCGTACTACAAAGGATTGAAGTTCTAGATAAATGCTTTTGCCATGACACAGTTGAAGAGATTGTTGATGCGATGGAAAATGCGGCAAGTGAAACAAATGATGCATGGTGCATTTCTACCCTAAATAAACTCAAAGAAGCTTCTCCATTGAGCTTGAAGGTTGCTTTGAGATCTATACGGGAAGGTAGATTTCAGACACTTGATCAATGCTTGTTGCGTGAGTACCGTATGACTTTACAAGCAATTCATAGGCAGATATCTGGGGACTTTTGTGAGGGAGTGAGGGCACGCGTGGTGGACAAGGACTTTGCACCAAAGGTACTGATTGTTTGCATTATCTTCTTATTGCAAATTTGCAATGACACTTTTGTCAAATTGCCAGCATGTCATCTGTCAATGATTGATGACTATCATATTACAATTTTCTCAGATTTAAAATTCATTTGATTAATGCAATTTCTTCAATTCACAGAAATGTGTATATGCTATAAATCTGTATTTGAAATCCAAATTTTTACACAATTGCCAACC
>Glyma03g27150.1 sequence type=CDS gene model=Glyma03g27150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGATGCAGAGCAAAAGGGCAGGGTGGTGGTTGCTCAGAAAGGCAAAGGCAAAGCTGAGTCTTAACACTGACCGAAACCTCTCTTCTTCTCAACACCTCATTCTCGACAACCCCAATCTCAATCAGGTTTTGGTCGAAGGAAATGGTTTCTCCAGAATGGCCATTCTCAATAGACCCTCTGCTCTCAATGCTCTCAACACCAATATGGCGGCTACACTGCATAAACTTTATAGGAGCTGGGAAGAGGACCCTGATATTGGTTTTGTGATGCTCAAGGGCAGCGGCCGAGCATTTGCAGCTGGTGGAGATATTGTTGCGCTTTACCATTTGATAAACAAAGGGAACTTGGAAGCCTGTAAAGAATTTTTTAGAACGGCATATAGTTTTATGTACCTGATAGGTACATATTTGAAGCCACATGTTGCTCTTCTGAATGGCATTACCATGGGTGGTGGGGCTGGAATTTCAATCCCTGGGACATTTCGAGTTGCAACAGACAAAACTATTTTTGCTACCCCTGAAGTTCTTATTGGATTCCACCCTGATGCTGCAGCATCTTTTTACCTTTCACATTTACCTGGTCAATTAGGAGAATACTTGGCTCTGACTGGGGAAAAGCTCAACGGAGTAGAGATGGTTGCTTGTGGGCTTGCTACACACTATTCATCAAGTGCAAGGCTTCCTTTAATCGAAGAACAACTGGGGAAATTGGTTACTGATGACCCGTCTGTCATTGAAACTACTTTAGAACAGTATGGTGAGATCGTACATCTAGACAGCAGTAGCGTACTACAAAGGATTGAAGTTCTAGATAAATGCTTTTGCCATGACACAGTTGAAGAGATTGTTGATGCGATGGGGGAAGCAAATTTCTTCTTCTCTTCCCAAGGCTCCACCCTTCCTTTTTCTGGTTCCTTTCCCAGATTTGTTTCGAAAGGAGAGGAAAATGCGGCAAGTGAAACAAATGATGCATGGTGCATTTCTACCCTAAATAAACTCAAAGAAGCTTCTCCATTGAGCTTGAAGGTTGCTTTGAGATCTATACGGGAAGGTAGATTTCAGACACTTGATCAATGCTTGTTGCGTGAGTACCGTATGACTTTACAAGCAATTCATAGGCAGATATCTGGGGACTTTTGTGAGGGAGTGAGGGCACGCGTGGTGGACAAGGACTTTGCACCAAAGTGGGATCCTCCAACCTTGGAAAAGGTGTCTCAAGATATGGTGGATCACTACTTCTTACCTCTGAGTGAATCTGAACCTGATCTAGAGCTGCCCACAAACAATCGTGAAGCATTTTTGTAG >Glyma03g27150.2 sequence type=CDS gene model=Glyma03g27150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGATGCAGAGCAAAAGGGCAGGGTGGTGGTTGCTCAGAAAGGCAAAGGCAAAGCTGAGTCTTAACACTGACCGAAACCTCTCTTCTTCTCAACACCTCATTCTCGACAACCCCAATCTCAATCAGGTTTTGGTCGAAGGAAATGGTTTCTCCAGAATGGCCATTCTCAATAGACCCTCTGCTCTCAATGCTCTCAACACCAATATGGCGGCTACACTGCATAAACTTTATAGGAGCTGGGAAGAGGACCCTGATATTGGTTTTGTGATGCTCAAGGGCAGCGGCCGAGCATTTGCAGCTGGTGGAGATATTGTTGCGCTTTACCATTTGATAAACAAAGGGAACTTGGAAGCCTGTAAAGAATTTTTTAGAACGGCATATAGTTTTATGTACCTGATAGGTACATATTTGAAGCCACATGTTGCTCTTCTGAATGGCATTACCATGGGTGGTGGGGCTGGAATTTCAATCCCTGGGACATTTCGAGTTGCAACAGACAAAACTATTTTTGCTACCCCTGAAGTTCTTATTGGATTCCACCCTGATGCTGCAGCATCTTTTTACCTTTCACATTTACCTGGTCAATTAGGAGAATACTTGGCTCTGACTGGGGAAAAGCTCAACGGAGTAGAGATGGTTGCTTGTGGGCTTGCTACACACTATTCATCAAGTGCAAGGCTTCCTTTAATCGAAGAACAACTGGGGAAATTGGTTACTGATGACCCGTCTGTCATTGAAACTACTTTAGAACAGTATGGTGAGATCGTACATCTAGACAGCAGTAGCGTACTACAAAGGATTGAAGTTCTAGATAAATGCTTTTGCCATGACACAGTTGAAGAGATTGTTGATGCGATGGAAAATGCGGCAAGTGAAACAAATGATGCATGGTGCATTTCTACCCTAAATAAACTCAAAGAAGCTTCTCCATTGAGCTTGAAGGTTGCTTTGAGATCTATACGGGAAGGTAGATTTCAGACACTTGATCAATGCTTGTTGCGTGAGTACCGTATGACTTTACAAGCAATTCATAGGCAGATATCTGGGGACTTTTGTGAGGGAGTGAGGGCACGCGTGGTGGACAAGGACTTTGCACCAAAGTGGGATCCTCCAACCTTGGAAAAGGTGTCTCAAGATATGGTGGATCACTACTTCTTACCTCTGAGTGAATCTGAACCTGATCTAGAGCTGCCCACAAACAATCGTGAAGCATTTTTGTAG >Glyma03g27150.3 sequence type=CDS gene model=Glyma03g27150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGATGCAGAGCAAAAGGGCAGGGTGGTGGTTGCTCAGAAAGGCAAAGGCAAAGCTGAGTCTTAACACTGACCGAAACCTCTCTTCTTCTCAACACCTCATTCTCGACAACCCCAATCTCAATCAGGTTTTGGTCGAAGGAAATGGTTTCTCCAGAATGGCCATTCTCAATAGACCCTCTGCTCTCAATGCTCTCAACACCAATATGGCGGCTACACTGCATAAACTTTATAGGAGCTGGGAAGAGGACCCTGATATTGGTTTTGTGATGCTCAAGGGCAGCGGCCGAGCATTTGCAGCTGGTGGAGATATTGTTGCGCTTTACCATTTGATAAACAAAGGGAACTTGGAAGCCTGTAAAGAATTTTTTAGAACGGCATATAGTTTTATGTACCTGATAGGTACATATTTGAAGCCACATGTTGCTCTTCTGAATGGCATTACCATGGGTGGTGGGGCTGGAATTTCAATCCCTGGGACATTTCGAGTTGCAACAGACAAAACTATTTTTGCTACCCCTGAAGTTCTTATTGGATTCCACCCTGATGCTGCAGCATCTTTTTACCTTTCACATTTACCTGGTCAATTAGGAGAATACTTGGCTCTGACTGGGGAAAAGCTCAACGGAGTAGAGATGGTTGCTTGTGGGCTTGCTACACACTATTCATCAAGTGCAAGGCTTCCTTTAATCGAAGAACAACTGGGGAAATTGGTTACTGATGACCCGTCTGTCATTGAAACTACTTTAGAACAGTATGGTGAGATCGTACATCTAGACAGCAGTAGCGTACTACAAAGGATTGAAGTTCTAGATAAATGCTTTTGCCATGACACAGTTGAAGAGATTGTTGATGCGATGGAAAATGCGGCAAGTGAAACAAATGATGCATGGTGCATTTCTACCCTAAATAAACTCAAAGAAGCTTCTCCATTGAGCTTGAAGGTTGCTTTGAGATCTATACGGGAAGGTAGATTTCAGACACTTGATCAATGCTTGTTGCGTGAGTACCGTATGACTTTACAAGCAATTCATAGGCAGATATCTGGGGACTTTTGTGAGGGAGTGAGGGCACGCGTGGTGGACAAGGACTTTGCACCAAAGGTACTGATTGTTTGCATTATCTTCTTATTGCAAATTTGCAATGACACTTTTGTCAAATTGCCAGCATGTCATCTGTCAATGATTGATGACTATCATATTACAATTTTCTCAGATTTAAAATTCATTTGA
>Glyma03g27150.1 sequence type=predicted peptide gene model=Glyma03g27150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMMQSKRAGWWLLRKAKAKLSLNTDRNLSSSQHLILDNPNLNQVLVEGNGFSRMAILNRPSALNALNTNMAATLHKLYRSWEEDPDIGFVMLKGSGRAFAAGGDIVALYHLINKGNLEACKEFFRTAYSFMYLIGTYLKPHVALLNGITMGGGAGISIPGTFRVATDKTIFATPEVLIGFHPDAAASFYLSHLPGQLGEYLALTGEKLNGVEMVACGLATHYSSSARLPLIEEQLGKLVTDDPSVIETTLEQYGEIVHLDSSSVLQRIEVLDKCFCHDTVEEIVDAMGEANFFFSSQGSTLPFSGSFPRFVSKGEENAASETNDAWCISTLNKLKEASPLSLKVALRSIREGRFQTLDQCLLREYRMTLQAIHRQISGDFCEGVRARVVDKDFAPKWDPPTLEKVSQDMVDHYFLPLSESEPDLELPTNNREAFL* >Glyma03g27150.2 sequence type=predicted peptide gene model=Glyma03g27150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMMQSKRAGWWLLRKAKAKLSLNTDRNLSSSQHLILDNPNLNQVLVEGNGFSRMAILNRPSALNALNTNMAATLHKLYRSWEEDPDIGFVMLKGSGRAFAAGGDIVALYHLINKGNLEACKEFFRTAYSFMYLIGTYLKPHVALLNGITMGGGAGISIPGTFRVATDKTIFATPEVLIGFHPDAAASFYLSHLPGQLGEYLALTGEKLNGVEMVACGLATHYSSSARLPLIEEQLGKLVTDDPSVIETTLEQYGEIVHLDSSSVLQRIEVLDKCFCHDTVEEIVDAMENAASETNDAWCISTLNKLKEASPLSLKVALRSIREGRFQTLDQCLLREYRMTLQAIHRQISGDFCEGVRARVVDKDFAPKWDPPTLEKVSQDMVDHYFLPLSESEPDLELPTNNREAFL* >Glyma03g27150.3 sequence type=predicted peptide gene model=Glyma03g27150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMMQSKRAGWWLLRKAKAKLSLNTDRNLSSSQHLILDNPNLNQVLVEGNGFSRMAILNRPSALNALNTNMAATLHKLYRSWEEDPDIGFVMLKGSGRAFAAGGDIVALYHLINKGNLEACKEFFRTAYSFMYLIGTYLKPHVALLNGITMGGGAGISIPGTFRVATDKTIFATPEVLIGFHPDAAASFYLSHLPGQLGEYLALTGEKLNGVEMVACGLATHYSSSARLPLIEEQLGKLVTDDPSVIETTLEQYGEIVHLDSSSVLQRIEVLDKCFCHDTVEEIVDAMENAASETNDAWCISTLNKLKEASPLSLKVALRSIREGRFQTLDQCLLREYRMTLQAIHRQISGDFCEGVRARVVDKDFAPKVLIVCIIFLLQICNDTFVKLPACHLSMIDDYHITIFSDLKFI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
