SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G11680 | AT | Annotation by Michelle Graham. TAIR10: CYTOCHROME P450 51G1 | chr1:3938925-3940585 FORWARD LENGTH=488 | SoyBase | E_val: 0 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0009086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0019745 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentacyclic triterpenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004497 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: monooxygenase activity | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0008398 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sterol 14-demethylase activity | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016705 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | SoyBase | N/A | ISS |
| GO:0019825 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxygen binding | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| KOG0158 | KOG | Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies | JGI | ISS | |
| KOG0684 | KOG | Cytochrome P450 | JGI | ISS | |
| PTHR24286 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24286:SF13 | Panther | JGI | ISS | ||
| PF00067 | PFAM | Cytochrome P450 | JGI | ISS | |
| UniRef100_Q2LAJ9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450 monooxygenase CYP51G1 (Fragment) n=1 Tax=Glycine max RepID=Q2LAJ9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339A75 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339A75 related cluster n=1 Tax=unknown RepID=UPI0002339A75 | SoyBase | E_val: 0 | ISS |
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Glyma03g26820 not represented in the dataset |
Glyma03g26820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g14460 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g115300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g26820.2 sequence type=transcript gene model=Glyma03g26820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATTGATGGTAGGTTTCTGAACACTGGCCTCCTCCTTGTGGCCACAATCCTTGTAGCCAAACTCATCTCAGCTTTCATAGTGCCCAAGTCCAGAAAGAGGGTACCCCCAATTGTGAAGGGGTGGCCCTTAATTGGAGGGCTAATCCGTTTCCTTAAAGGTCCAATCTTTATGCTCCGTGAGGAGTACCCTAAGCTTGGGAGTGTCTTCACCCTCAAGCTCTTCCACAAGAACATCACCTTCCTCGTTGGCCCTGAGGTCTCTGCATACTTCTTCAAGGCCTCAGAGACTGATCTCAGCCAGCAAGAGGTGTATCAGTTCAATGTGCCAAGTTTTGGACCTGGTGTGGTCTTTGATGTTGATTACTCTGTGAGGCAGGAACAGTTCAGGTTCTTCACTGAGGCTCTTAGGGTCAACAAGCTCAAGGGCTATGTCAATCAGATGGTTGCAGAAGCTGAGGACTATTTCTCAAAATGGGGACCAAGTGGTGAGGTTGATTTGAAGTATGAGCTTGAGCATCTGATCATCTTGACAGCCAGTAGATGTCTCTTGGGGCGTGAAGTTCGTGACAAGCTCTTTGATGATGTCTCTGCATTGTTCCACGACCTTGACAATGGGATGCTTCCAATCAGTGTTCTCTTCCCATACCTGCCAATCCCAGCTCACAAGCGCCGTGACCAGGCACGCAAGAAGCTTGCTGAAATCTTCGCAAGCATCATAACATCTCGCAAGAGTGCCAGCAAATCAGAAGAAGACATGCTGCAGTGCTTCATTGACTCAAAATACAAAGATGGTCGCTCAACAACAGAAGCTGAAGTGACCGGACTCCTCATTGCTGCACTTTTTGCCGGTCAACACACAAGTTCAATTACCTCCACTTGGACTGGAGCATATCTGCTGTCTGACAACCAGTGCCTTTCAGCTGTGCAGGAGGAGCAGAAGATGTTAATAGAAAGCATGGGGACAGAGTTGATCATGATGTTTTGGCTGAAATGGATGTGCATCAAAGAAGCCTTGAGACTCCATCCTCCTCTAATTATGCTGATGAGAAGCTCACACACTGATTTTAGTGTCACGACACGAGAGGGTAAAGAGTATGACATTCCCAAGGGTCATATAATTGCCACATCACCTGCTTTTGCAAACAGGCTAGGTCATGTTTTCAAGGACCCTGATAGGTATGATCCTGATCGATTTGCTGTGGGGAGGGAAGAGGACAAGGTGGCAGGTGCATTCTCATACATTTCATTTGGAGGAGGCAGACATGGATGCCTTGGGGAGCCTTTTGCATATCTGCAGATAAAAGCTATATGGACTCATCTGCTTAGGAATTTTGAACTGGAGTTGGTGTCACCTTTCCCCGAGATTGATTGGAATGCCATGGTTGTGGGAGTGAAGGGGAAAGTGATGGTCCGATATAAGCGGAAGGAGCTTTCGGTTAATCAATAG
>Glyma03g26820.1 sequence type=CDS gene model=Glyma03g26820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATTGATGGTAGGTTTCTGAACACTGGCCTCCTCCTTGTGGCCACAATCCTTGTAGCCAAACTCATCTCAGCTTTCATAGTGCCCAAGTCCAGAAAGAGGGTACCCCCAATTGTGAAGGGGTGGCCCTTAATTGGAGGGCTAATCCGTTTCCTTAAAGGTCCAATCTTTATGCTCCGTGAGGAGTACCCTAAGCTTGGGAGTGTCTTCACCCTCAAGCTCTTCCACAAGAACATCACCTTCCTCGTTGGCCCTGAGGTCTCTGCATACTTCTTCAAGGCCTCAGAGACTGATCTCAGCCAGCAAGAGGTGTATCAGTTCAATGTGCCAAGTTTTGGACCTGGTGTGGTCTTTGATGTTGATTACTCTGTGAGGCAGGAACAGTTCAGGTTCTTCACTGAGGCTCTTAGGGTCAACAAGCTCAAGGGCTATGTCAATCAGATGGTTGCAGAAGCTGAGGACTATTTCTCAAAATGGGGACCAAGTGGTGAGGTTGATTTGAAGTATGAGCTTGAGCATCTGATCATCTTGACAGCCAGTAGATGTCTCTTGGGGCGTGAAGTTCGTGACAAGCTCTTTGATGATGTCTCTGCATTGTTCCACGACCTTGACAATGGGATGCTTCCAATCAGTGTTCTCTTCCCATACCTGCCAATCCCAGCTCACAAGCGCCGTGACCAGGCACGCAAGAAGCTTGCTGAAATCTTCGCAAGCATCATAACATCTCGCAAGAGTGCCAGCAAATCAGAAGAAGACATGCTGCAGTGCTTCATTGACTCAAAATACAAAGATGGTCGCTCAACAACAGAAGCTGAAGTGACCGGACTCCTCATTGCTGCACTTTTTGCCGGTCAACACACAAGTTCAATTACCTCCACTTGGACTGGAGCATATCTGCTGTCTGACAACCAGTGCCTTTCAGCTGTGCAGGAGGAGCAGAAGATGTTAATAGAAAGCATGGGGACAGAGTTGATCATGATGTTTTGGCTGAAATGGATGTGCTGTATAGGTGCATCAAAGAAGCCTTGA >Glyma03g26820.2 sequence type=CDS gene model=Glyma03g26820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATTGATGGTAGGTTTCTGAACACTGGCCTCCTCCTTGTGGCCACAATCCTTGTAGCCAAACTCATCTCAGCTTTCATAGTGCCCAAGTCCAGAAAGAGGGTACCCCCAATTGTGAAGGGGTGGCCCTTAATTGGAGGGCTAATCCGTTTCCTTAAAGGTCCAATCTTTATGCTCCGTGAGGAGTACCCTAAGCTTGGGAGTGTCTTCACCCTCAAGCTCTTCCACAAGAACATCACCTTCCTCGTTGGCCCTGAGGTCTCTGCATACTTCTTCAAGGCCTCAGAGACTGATCTCAGCCAGCAAGAGGTGTATCAGTTCAATGTGCCAAGTTTTGGACCTGGTGTGGTCTTTGATGTTGATTACTCTGTGAGGCAGGAACAGTTCAGGTTCTTCACTGAGGCTCTTAGGGTCAACAAGCTCAAGGGCTATGTCAATCAGATGGTTGCAGAAGCTGAGGACTATTTCTCAAAATGGGGACCAAGTGGTGAGGTTGATTTGAAGTATGAGCTTGAGCATCTGATCATCTTGACAGCCAGTAGATGTCTCTTGGGGCGTGAAGTTCGTGACAAGCTCTTTGATGATGTCTCTGCATTGTTCCACGACCTTGACAATGGGATGCTTCCAATCAGTGTTCTCTTCCCATACCTGCCAATCCCAGCTCACAAGCGCCGTGACCAGGCACGCAAGAAGCTTGCTGAAATCTTCGCAAGCATCATAACATCTCGCAAGAGTGCCAGCAAATCAGAAGAAGACATGCTGCAGTGCTTCATTGACTCAAAATACAAAGATGGTCGCTCAACAACAGAAGCTGAAGTGACCGGACTCCTCATTGCTGCACTTTTTGCCGGTCAACACACAAGTTCAATTACCTCCACTTGGACTGGAGCATATCTGCTGTCTGACAACCAGTGCCTTTCAGCTGTGCAGGAGGAGCAGAAGATGTTAATAGAAAGCATGGGGACAGAGTTGATCATGATGTTTTGGCTGAAATGGATGTGCATCAAAGAAGCCTTGAGACTCCATCCTCCTCTAATTATGCTGATGAGAAGCTCACACACTGATTTTAGTGTCACGACACGAGAGGGTAAAGAGTATGACATTCCCAAGGGTCATATAATTGCCACATCACCTGCTTTTGCAAACAGGCTAGGTCATGTTTTCAAGGACCCTGATAGGTATGATCCTGATCGATTTGCTGTGGGGAGGGAAGAGGACAAGGTGGCAGGTGCATTCTCATACATTTCATTTGGAGGAGGCAGACATGGATGCCTTGGGGAGCCTTTTGCATATCTGCAGATAAAAGCTATATGGACTCATCTGCTTAGGAATTTTGAACTGGAGTTGGTGTCACCTTTCCCCGAGATTGATTGGAATGCCATGGTTGTGGGAGTGAAGGGGAAAGTGATGGTCCGATATAAGCGGAAGGAGCTTTCGGTTAATCAATAG
>Glyma03g26820.1 sequence type=predicted peptide gene model=Glyma03g26820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEIDGRFLNTGLLLVATILVAKLISAFIVPKSRKRVPPIVKGWPLIGGLIRFLKGPIFMLREEYPKLGSVFTLKLFHKNITFLVGPEVSAYFFKASETDLSQQEVYQFNVPSFGPGVVFDVDYSVRQEQFRFFTEALRVNKLKGYVNQMVAEAEDYFSKWGPSGEVDLKYELEHLIILTASRCLLGREVRDKLFDDVSALFHDLDNGMLPISVLFPYLPIPAHKRRDQARKKLAEIFASIITSRKSASKSEEDMLQCFIDSKYKDGRSTTEAEVTGLLIAALFAGQHTSSITSTWTGAYLLSDNQCLSAVQEEQKMLIESMGTELIMMFWLKWMCCIGASKKP* >Glyma03g26820.2 sequence type=predicted peptide gene model=Glyma03g26820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEIDGRFLNTGLLLVATILVAKLISAFIVPKSRKRVPPIVKGWPLIGGLIRFLKGPIFMLREEYPKLGSVFTLKLFHKNITFLVGPEVSAYFFKASETDLSQQEVYQFNVPSFGPGVVFDVDYSVRQEQFRFFTEALRVNKLKGYVNQMVAEAEDYFSKWGPSGEVDLKYELEHLIILTASRCLLGREVRDKLFDDVSALFHDLDNGMLPISVLFPYLPIPAHKRRDQARKKLAEIFASIITSRKSASKSEEDMLQCFIDSKYKDGRSTTEAEVTGLLIAALFAGQHTSSITSTWTGAYLLSDNQCLSAVQEEQKMLIESMGTELIMMFWLKWMCIKEALRLHPPLIMLMRSSHTDFSVTTREGKEYDIPKGHIIATSPAFANRLGHVFKDPDRYDPDRFAVGREEDKVAGAFSYISFGGGRHGCLGEPFAYLQIKAIWTHLLRNFELELVSPFPEIDWNAMVVGVKGKVMVRYKRKELSVNQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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