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Report for Sequence Feature Glyma03g26520

Feature Type:gene_model
Chromosome:Gm03
Start:33966555
stop:33967738
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g26520
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G44840AT Annotation by Michelle Graham. TAIR10: ethylene-responsive element binding factor 13 | chr2:18495440-18496120 FORWARD LENGTH=226 SoyBaseE_val: 1.00E-36ISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0009873GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF00847PFAM AP2 domain JGI ISS
UniRef100_I1JMR6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JMR6_SOYBN SoyBaseE_val: 3.00E-166ISS
UniRef100_Q8LLR3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ethylene-responsive element binding protein 1 n=1 Tax=Glycine max RepID=Q8LLR3_SOYBN SoyBaseE_val: 1.00E-53ISS

Expression Patterns of Glyma03g26520
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g26520
ParalogEvidenceComments
Glyma07g14060 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g26520 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g112700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g26520
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g26520
>Glyma03g26520.1   sequence type=CDS   gene model=Glyma03g26520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCACGATATCTTGTGATTTCTCTTCAGTGGAATCTATTCAACACTATCTTCTTGAGCTTGAACACGATTTCAACACACTCATGAACGCTTCCAATCACGAAATTTGCTATTCTCCAACGTACAATTCATTCCCAAGCTCTACTACGTTCCGCTTGGAAGGTGTCCATGATGCAGAAGGGTCGTTAGCATGCAAAAGAGAACACCCTAAGGTGGAGCGTGAATTTCACGCGCCACCAGCATGGAAGCGTTACCGGGGCGTGAGGCGTAGACCTTGGGGCAAGTTCGCGGCGGAAATAAGAGATCCAAAGAAGAATGGTGCTAGGATATGGCTTGGGACTTACGAAACTGAAGAAGAAGCGGGTTTAGCTTATGATAGAGCTGCTTTTAAGATGCGTGGCAGCAAAGCTAAGTTAAATTTTCCTCACCTCATTGGTTCTCACGCGCCTCTGAAGCCGATAAGAGTATTGACAAAGACTTTGAAGCAAAATTTGCTAGAGTCTGATTTGTCATACTCATCGGCTCCACAGACGCAAGAGTCAAAGAAGAGAAAAAATTTGACCGACTTGTTGAACAGGTTGGCCAAGAATAGGAAACAAGTGGAGGTGTTTGAAATGAGTTTACATGCATCAAATGATGTCAATGTTGATCAATGGTGGAGTAATTAA
Predicted protein sequences of Glyma03g26520
>Glyma03g26520.1   sequence type=predicted peptide   gene model=Glyma03g26520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATTISCDFSSVESIQHYLLELEHDFNTLMNASNHEICYSPTYNSFPSSTTFRLEGVHDAEGSLACKREHPKVEREFHAPPAWKRYRGVRRRPWGKFAAEIRDPKKNGARIWLGTYETEEEAGLAYDRAAFKMRGSKAKLNFPHLIGSHAPLKPIRVLTKTLKQNLLESDLSYSSAPQTQESKKRKNLTDLLNRLAKNRKQVEVFEMSLHASNDVNVDQWWSN*






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