SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G19820 | AT | Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116 | SoyBase | E_val: 2.00E-71 | ISS |
| GO:0009165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0052541 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall cellulose metabolic process | SoyBase | N/A | ISS |
| GO:0052546 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0030089 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: phycobilisome | SoyBase | N/A | ISS |
| GO:0016829 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lyase activity | SoyBase | N/A | ISS |
| PTHR10527 | Panther | IMPORTIN BETA | JGI | ISS | |
| PTHR10527:SF5 | Panther | IMPORTIN BETA-1 | JGI | ISS | |
| PF03552 | PFAM | Cellulose synthase | JGI | ISS | |
| UniRef100_G7IV19 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cellulose synthase-like protein E1 n=1 Tax=Medicago truncatula RepID=G7IV19_MEDTR | SoyBase | E_val: 2.00E-90 | ISS |
| UniRef100_UPI0002338E1E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338E1E related cluster n=1 Tax=unknown RepID=UPI0002338E1E | SoyBase | E_val: 2.00E-134 | ISS |
|
Glyma03g26235 not represented in the dataset |
Glyma03g26235 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g111400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g26235.1 sequence type=CDS gene model=Glyma03g26235 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAGGGTTGAGTACTCCCCATTGTTTGAGACAAGAAGGTGCAGAGGAAGGTTCATCTACAGGTCCTTTGCAATCTCATTATTTGTGACCATATGCTTTATATGGCATTACAGATTTAGCCACATAACAAAGGGTGAAGATGGAAACTGGGCATGGCTTGGTATGCTTGCTTCAGAGCTGTGGTTTGGCTTTTACTGGGTCCTTACTCAAGCCCTTAGATGGAACCTTGTGTTCAGACAACCCTTCAAAAACAGACTCTCTCAAAGATATGAGAAAAAGTTGCCAAGAGTGGACATATTTGTGTGCACAGCAGATCCAGATATTGAGCCAGCAATGATGGTGATTAACACAGTGCTATCTGTTATGGCTTATGATTATCCAACTGAAAAATTGAGTGTGTATCTCTCTGGTGATGTTGGATCGCAAATCACGTTCTATGCTCTGCTAAAGGCTTCAAACTTTGCAAAACATTGGGTCCCATTCTGCAAGAGGTTCAAAGTGGAACCCAGGTCACCATCTGCATATTTTAAAAGCATAGTCTCATCAGGTTACCCTACAGACCCAAGTCAAGCCAAAGAACTGGGAGCTATTAAGAATGGGAAGCAAATGGTTGAAGAATGGGCTTTGACAGCCTTAGCATATGTTGCAGATTCTTCAGAGGTGCAATTTCAGAAGTATTATGATGTTGTGATGCCATACTTAAAAGCTATTTTGGTGAACGCAAATGATAAATCTAATCGTATGCTTCGAGCCAAAGCAATGGAGTGCATTAGTTTGGTAGGAATGGTTGTTGGAAAGGAGAAGTTCAGGGATGATGCCAAACAGGTCATGGATGTCTTGATGTCACTGCAACAATCTCAACTGGATGCTGATGATCCAACTGCAAGTTACATGTTACAAGCATGGGCACGGCTTTGCAAGTGCCTTGGGCAGGATTTTCTCCCATATATGGGTTTTGTGATGCCTCCTTTGCTCCAGTCTGCACAACTGAAGCCCGATGTGACCATTACATCAGCGGATTCTGATACTGAATTTGATGAAGATGATGACAGGTGCCCTTTCAGTTATTGTTACTGA
>Glyma03g26235.1 sequence type=predicted peptide gene model=Glyma03g26235 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRVEYSPLFETRRCRGRFIYRSFAISLFVTICFIWHYRFSHITKGEDGNWAWLGMLASELWFGFYWVLTQALRWNLVFRQPFKNRLSQRYEKKLPRVDIFVCTADPDIEPAMMVINTVLSVMAYDYPTEKLSVYLSGDVGSQITFYALLKASNFAKHWVPFCKRFKVEPRSPSAYFKSIVSSGYPTDPSQAKELGAIKNGKQMVEEWALTALAYVADSSEVQFQKYYDVVMPYLKAILVNANDKSNRMLRAKAMECISLVGMVVGKEKFRDDAKQVMDVLMSLQQSQLDADDPTASYMLQAWARLCKCLGQDFLPYMGFVMPPLLQSAQLKPDVTITSADSDTEFDEDDDRCPFSYCY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
