SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G02110 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF630 and DUF632) | chr1:392939-395434 FORWARD LENGTH=703 | SoyBase | E_val: 0 | ISS |
| GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0016571 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone methylation | SoyBase | N/A | ISS |
| GO:0016579 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein deubiquitination | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR21450 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF04782 | PFAM | Protein of unknown function (DUF632) | JGI | ISS | |
| PF04783 | PFAM | Protein of unknown function (DUF630) | JGI | ISS | |
| UniRef100_D9ZIP8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: BZIP domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIP8_MALDO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JMQ8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JMQ8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g26210 not represented in the dataset |
Glyma03g26210 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g111300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g26210.1 sequence type=CDS gene model=Glyma03g26210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTGCACGGCGTCGAAACTCGACAACGAGGAAACCGTGAGGCGCTGCAAGGAACGGCGTCGTTTCATGAAAGATGCCGTTTACGCGCGCCACCACCTTGCGGCGGCGCACTCTGACTACTGCCGCTGCCTCCGCCTCACCGGCTCCGCTCTCTACACCTTCGCCGCCGGCGAACCCCTCGCCGTCTCCGACGACACTCCCGCCGTCATCCTCAAAACCACTACCACCGCCGCCGCCGATAATCCCCAAACGCATCCTCCTCCTCCTTCCGCCGCCGCAACAAGCCCCAAACTCCCTCGCATAATAACCTCCGACGTCACGCGCCGCCGAAAACCGCCATCGAAGCTTCCTCATATACTCTCTGAATCGAGCCTCTGTTCCACGCCTGGAAGCGAGTATTCAAACTTCTTCGCCACCGCACCTACTTCGAAACCACCACATCCTCCTCCTCCTTCCGCCGCCGCGCGTCGCCGCAAGCCTACCCCGAAACTCCCTCACATCCTCTCCGAATCGAGCCTCTGTTCCTCGCCGCGAAGCGAGTATTCGAATTTCTTCCCCAGGGCGCAACAAGTTCAATCCACCACGCCTACTTCGCAAGCCTCTTCGGTTTGGAATTGGGAGAATTTCTATCCTCCCCCGTCTCCTCCAGGCTCCGATTACTTCCGCCAAAAAAATCACAAATCGGAAACGCCGAATCTCGAAACGTCGGAATCGGAATCTGAATCGACCTATAATCCGTTCGGTTCAAAAGTTCAACGTATACGCAAAATCGAAAACATTACTAACGTTGATTCAATTTCACAGCAACAAAACGCGGAACGTGAAGTTTTGGAATCGGAATCGGAATACGGATACTTACGTGAACCGGTTCAGACGGAGCGTGAGGAGGTTCTATGCAGCGAGTGGGAGGACCGTTACAGTTCCTCGAGTTCGTCGTCGTCGGAGGAGGAAGGGACCGCCAAAAATAGATCGCCGGCGAAGGCGGAATCTGACGCCGGCGGCGATGCTCCGGAGAAGAAGGATGAGAAGGTTGATGATGACGTGGCGGAGGCGGCTAAGGTTGCCGTGAGGCATAGGGATTTGAAGGAGATAGTGGAAGCGGTTAGGGAGAATTTTGAGAAGGCTGCGATGGCCGGAGATCAGTTATCGGAGATGCTCGAAGTTAGCAAAGCGCACCTTGATCGGAGTTTCAAGCAATTGAGGAAAACACTTTACCATTCAAATAGTATACTGAGCAACCTGAGTTCGAGTTGGACCTCTAAACCGCCGTTGGTGGTTAAGTACCGGTTCGACGCCGGTTCGTTGGACGGACCGGGAGGTTCGAAGAGTCTGTGTGCTACTTTGGAACGGCTTTTAGCTTGGGAGAAGAAGCTGTATCAGGAAGTGAAGGCTAGAGAAGGTGTGAAGATTGAGCATGAAAATAAATTATCAGCACTGCAAAGTCAAGAATGCAAAGGGGGTGATGAAGCAAAGCTAGATAAGACCAAGGCCTCCATAACAAGGTTGCAGTCATTAATTGTTGTCACATCTCAGGCCGTGTCTACCACCTCAGCTGCCATTAATGGCCTTAGGGACTCTGATCTTGTTCCTCAGCTTGTTGAGCTCTGTCATGGAATCTTATACATGTGGAAGTCAATGCATCAGTACCATGAAATTCAAAGCAACATTGTGCAGCAAGTCCGTGGCCTTGTGAACCAATCATCCGAAGGTCACTCAACATCTGAATCACACAAGCAGGCAACTCGTGATCTTGAATCAGCTGTGTCAGCTTGGCACTCCAGTTTCTGCCGCCTCATAAAGTTTCAACGTGACTTCATCCTGTCTCTACATGGCTGGCTCAAGTTGAACCTTATTCCAGTCAACAATGACAACAACAGCAGCAGTGAACCATCTGGTGTGCTTTCTTTCTGTGATGAATGGAAACTAGCCCTTGACCGTGTTCCGGACACAGTTGCTTCCGAAGCAATCAAAAGCTTCATCAATGTTGTCCATGTGATATCTGTCAAGCAATCTGAAGAGCTCAAGATTAAGAGGAGAACTGAGAATTCTTCCAAGGAATTTGAGAAAAAATCTTCATCTCTGAGAAGCATAGAAAGGAAGTTTTACAGCTCCTATTCTATGGTAGGTATTACCCCTCCTGAGTCAGGGCCTGGTAATGGACAAGGCTTGGATGCAAGAGACCCTCTTGCTGAAAAAAAAATGGAACTAGCAGCACACCAAAGGCGCGTTGAAGATGAAATGGTGAGGCATTCAAAGGCTGTTGAGGTGACTAGAGCCATGACACTCAACAATCTACAGACAGGCTTGCCTGGAGTGTTTCAGGCATTGACCAGTTTTTCTACTTTGTTCACTGAGGCTCTTGAGTCAGTATGTAGCCGTTCATATGCCATCAAGTAA
>Glyma03g26210.1 sequence type=predicted peptide gene model=Glyma03g26210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGCTASKLDNEETVRRCKERRRFMKDAVYARHHLAAAHSDYCRCLRLTGSALYTFAAGEPLAVSDDTPAVILKTTTTAAADNPQTHPPPPSAAATSPKLPRIITSDVTRRRKPPSKLPHILSESSLCSTPGSEYSNFFATAPTSKPPHPPPPSAAARRRKPTPKLPHILSESSLCSSPRSEYSNFFPRAQQVQSTTPTSQASSVWNWENFYPPPSPPGSDYFRQKNHKSETPNLETSESESESTYNPFGSKVQRIRKIENITNVDSISQQQNAEREVLESESEYGYLREPVQTEREEVLCSEWEDRYSSSSSSSSEEEGTAKNRSPAKAESDAGGDAPEKKDEKVDDDVAEAAKVAVRHRDLKEIVEAVRENFEKAAMAGDQLSEMLEVSKAHLDRSFKQLRKTLYHSNSILSNLSSSWTSKPPLVVKYRFDAGSLDGPGGSKSLCATLERLLAWEKKLYQEVKAREGVKIEHENKLSALQSQECKGGDEAKLDKTKASITRLQSLIVVTSQAVSTTSAAINGLRDSDLVPQLVELCHGILYMWKSMHQYHEIQSNIVQQVRGLVNQSSEGHSTSESHKQATRDLESAVSAWHSSFCRLIKFQRDFILSLHGWLKLNLIPVNNDNNSSSEPSGVLSFCDEWKLALDRVPDTVASEAIKSFINVVHVISVKQSEELKIKRRTENSSKEFEKKSSSLRSIERKFYSSYSMVGITPPESGPGNGQGLDARDPLAEKKMELAAHQRRVEDEMVRHSKAVEVTRAMTLNNLQTGLPGVFQALTSFSTLFTEALESVCSRSYAIK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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