SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G60300 | AT | Annotation by Michelle Graham. TAIR10: RWD domain-containing protein | chr3:22285371-22287382 FORWARD LENGTH=366 | SoyBase | E_val: 4.00E-106 | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR12292 | Panther | RWD DOMAIN-CONTAINING PROTEIN | JGI | ISS | |
| PTHR12292:SF2 | Panther | gb def: conserved hypothetical protein [schizosaccharomyces pombe] | JGI | ISS | |
| PF05773 | PFAM | RWD domain | JGI | ISS | |
| UniRef100_B9RCZ1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein, putative n=1 Tax=Ricinus communis RepID=B9RCZ1_RICCO | SoyBase | E_val: 1.00E-128 | ISS |
| UniRef100_C6TJ42 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TJ42_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g26160 not represented in the dataset |
Glyma03g26160 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g110700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g26160.2 sequence type=CDS gene model=Glyma03g26160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAACTCCGTGGAGAGCACAAGAAGCAAGCAGGAATAGACATGTTGCACAGTGCAAGTGCCACCATGCCACTCGCTCTCTCTCTCTCTCTCCCATCGCCAGTGTTTGCGATTGCAATGTGAACGCTGAAATGACAGGATGGGATTGCAAGGAACGACATGCGGCTTCGTCCAACAATAGAGGGAAAATGGAGGAGCAAAAAGACCATAAAACCAAAAAATTAGCCACATTATACCAAAAAAAAAAACCACAAAAAAACCCTCCAATAAAATATAAGGTGATCAAATCAAACTTTTCAATTTTCATCTGTCAGCAAAAAAGAAAATTCAAACTTTTGGTTCGTAAAAACCCCAAATTCGAACCTTCTCTCATAATCTACACCCAAAAAGGGAAAAAAAAAGAGAGAATGGGGAACGAGGAAGAAGAAGAAGAAGTGGTGGCTGAAGTTGAAGCAGTGGAAGCCGTGTATGGAACCGATTGCGTCCTTCTCCGTTCATTCCCTCCCCATTTCCACATCTCTCTCAAACCCAGAACCGCTGATGTTTCATCCCAACAGTTTGTGGAAGCTGTTCTGGAGATACAAGCAAGCTCACAGTATCCAAAAGAACCACCTTCTGTTGATCTTGTGGATTGCAAGGGTCTGGATGAACAAAGAAAGAAGTATCTATTAAATTGCATACAGAGTAAAGCCTATGAGCTCTCCCCTTGTTTAATGCTTGTAGCTCTATGTGAGGAAGCTGCAGAGAAACTTTCATCTATGAATCATCCTGATGGTGATTGTCCGTTGTGTTTATTCCCTTTGGTCCCAGAAGATCAGGAAAGTGGAACCTTGCCTTTTATGAAGTTAATGTCTTGCTTTCATTGCTTTCACAGTGAATGTATCATTAGATGGTGGAAATGGCTTCAAAATTCTAACAAAGTAGACTCTTCTAATACAGATAGTGCAGCTGCACATCGTAACCAAGATAATCCTAAGAAAACGGAAGAGAGTGTTGGAAACTGCCCAGTCTGTCGCAAGCCTTTTCTTGCCAAGGATTTGGACCATGTGCTTGCTCTAGTTGGTTCATATTCTTCCCAATTGAGTTCAGATAATGAAGAACTCAACGAAGAGGAAAAGCTCCTTCAATCAGAGGATGAGATCAATAGGAGACAGAAATATGAAGCCATCTTAAATTTACAGAAGGAGAACAGTGGTTTGATTGAACCCAAAAAAGAGATGGTAATATTGCCCGGTATGTATCTTCCACAACCAGTAGCAATGCCCAGCTCCACACCAACCAAGGAATCTGATGAGCCGCAACAAAAAGATCCACCTGCAGTTGTGCCAGAAAAACATGCAGGTGGGACATCCAACAGCAGCATACCTAGTTCTAGCAGGCAGAGGAATTTTGGAGCAAGGAGACAGAAAGCAAGAAGTGATAACCACTCTAGTTCAACCGCAAGAAATCCAAGAAAACCAGCCCAACAGCAGTGGGTAAGAAGAGATAATCCTAGCAATAAGCCATAG
>Glyma03g26160.2 sequence type=predicted peptide gene model=Glyma03g26160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTTPWRAQEASRNRHVAQCKCHHATRSLSLSPIASVCDCNVNAEMTGWDCKERHAASSNNRGKMEEQKDHKTKKLATLYQKKKPQKNPPIKYKVIKSNFSIFICQQKRKFKLLVRKNPKFEPSLIIYTQKGKKKERMGNEEEEEEVVAEVEAVEAVYGTDCVLLRSFPPHFHISLKPRTADVSSQQFVEAVLEIQASSQYPKEPPSVDLVDCKGLDEQRKKYLLNCIQSKAYELSPCLMLVALCEEAAEKLSSMNHPDGDCPLCLFPLVPEDQESGTLPFMKLMSCFHCFHSECIIRWWKWLQNSNKVDSSNTDSAAAHRNQDNPKKTEESVGNCPVCRKPFLAKDLDHVLALVGSYSSQLSSDNEELNEEEKLLQSEDEINRRQKYEAILNLQKENSGLIEPKKEMVILPGMYLPQPVAMPSSTPTKESDEPQQKDPPAVVPEKHAGGTSNSSIPSSSRQRNFGARRQKARSDNHSSSTARNPRKPAQQQWVRRDNPSNKP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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