Glyma03g25790 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma03g25790): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma03g25790): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma03g25790

Feature Type:	gene_model
Chromosome:	Gm03
Start:	33106774
stop:	33109967
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g25790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02140	AT	Annotation by Michelle Graham. TAIR10: mago nashi family protein \| chr1:403467-404401 REVERSE LENGTH=150	SoyBase	E_val: 6.00E-82	ISS
GO:0007530	GO-bp	Annotation by Michelle Graham. GO Biological Process: sex determination	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0010183	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube guidance	SoyBase	N/A	ISS
GO:0010628	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of gene expression	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005654	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleoplasm	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016607	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear speck	SoyBase	N/A	ISS
GO:0035145	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: exon-exon junction complex	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG3392	KOG	Exon-exon junction complex, Magoh component	JGI		ISS
PTHR12638	Panther	FAMILY NOT NAMED	JGI		ISS
PF02792	PFAM	Mago nashi protein	JGI		ISS
UniRef100_G7J8K6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mago nashi-like protein n=2 Tax=Medicago truncatula RepID=G7J8K6_MEDTR	SoyBase	E_val: 3.00E-89	ISS
UniRef100_I1JMP2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JMP2_SOYBN	SoyBase	E_val: 4.00E-143	ISS

Expression Patterns of Glyma03g25790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g25790 not represented in the dataset	Glyma03g25790 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g25790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g109200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g25790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g25790

Limit To All Plant Sequences

>Glyma03g25790.2   sequence type=transcript   gene model=Glyma03g25790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTCTTTTTCTTCATTAGTCTAGTGACGAACCATCTTAATTTTCTCACAATTCCTCTGTTCTCGAAGGGCGTAGGAGAAGAGGGTTTCGTTCCGTTTCAATGGGGAGCGAAGAGCAGAACGGCGAATTCTACCTGCGTTACTACGTCGGTCACAAGGGCAAGTTTGGTCACGAGTTCCTGGAGTTCGAGTTCCGCCCAGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAAAACGACACCATCATCCGCAAGGAGGTTTACCTAACCCCCGCCGTTCTCCGCGAGTGCCGTCGCATCATCGCCGAGAGCGAGATTATGAAGGAAGATGATAACAACTGGCCCGAACCGGATCGGGTGGGGCGGCAGGAGCTCGAGATTGTTATGGGGAACGAGCACATTTCGTTCACCACGTCGAAGATTGGGTCTCTTGTTGATGTTCAGAGCAGTGCTGACCCCGAGGGTCTTCGCATCTTTTACTATCTTGTTCAGGATTTGAAGTGCTTTGTCTTCTCTCTTATTTCACTTCACTTCAAGATCAAGCCTATCTAATGTGTTTGCAATAATATGAGTTCATCCTCTGGGGAATATGTACTTTAACAACTATCACTTTTCTGCTAATGGAGTTCGACCTCTGATTGAGTGACTTTAATCTTGAAATGATTTGGTTCTGTATGGGTGATTACATGAATTGGAATTTTAAATTTGAGGGTATAACCCTTGTTCTAAAGTGTTGATTGGTTTGGTTTTTATGGATGGATTAGTTATTCTTTCGTTCTCTTGATTTCACTATTCTTTTGATCATCCATTGTTATATCACTAAAAAAAATTACTCTTATTGTAACTATTTAAAAATGTTTCTCTCATAATTATAGAAAAA

>Glyma03g25790.3   sequence type=transcript   gene model=Glyma03g25790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCGTGACCTAGCCAGCACAAAGGAGAAGAGGGTTTCGTTCCGTTTCAATGGGGAGCGAAGAGCAGAACGGCGAATTCTACCTGCGTTACTACGTCGGTCACAAGGGCAAGTTTGGTCACGAGTTCCTGGAGTTCGAGTTCCGCCCAGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAAAACGACACCATCATCCGCAAGGAGGTTTACCTAACCCCCGCCGTTCTCCGCGAGTGCCGTCGCATCATCGCCGAGAGCGAGATTATGAAGGAAGATGATAACAACTGGCCCGAACCGGATCGGGTGGGGCGGCAGGAGCTCGAGATTGTTATGGGGAACGAGCACATTTCGTTCACCACGTCGAAGATTGGGTCTCTTGTTGATGTTCAGAGCAGTGCTGACCCCGAGGGTCTTCGCATCTTTTACTATCTTGTTCAGGATTTGAAGTGCTTTGTCTTCTCTCTTATTTCACTTCACTTCAAGATCAAGCCTATCTAATGTGTTTGCAATAATATGAGTTCATCCTCTGGGGAATATGTACTTTAACAACTATCACTTTTCTGCTAATGGAGTTCGACCTCTGATTGAGTGACTTTAATCTTGAAATGATTTGGTTCTGTATGGGTGATTACATGAATTGGAATTTTAAATTTGAGGGTATAACCCTTGTTCTAAAGTGTTGATTGGTTTGGTTTTTATGGATGGATTAGTTATTCTTTCGTTCTCTTGA

>Glyma03g25790.4   sequence type=transcript   gene model=Glyma03g25790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCGTGACCTAGCCAGCACAAAGGGCGTAGGAGAAGAGGGTTTCGTTCCGTTTCAATGGGGAGCGAAGAGCAGAACGGCGAATTCTACCTGCGTTACTACGTCGGTCACAAGGGCAAGTTTGGTCACGAGTTCCTGGAGTTCGAGTTCCGCCCAGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAAAACGACACCATCATCCGCAAGGAGGTTTACCTAACCCCCGCCGTTCTCCGCGAGTGCCGTCGCATCATCGCCGAGAGCGAGATTATGAAGGAAGATGATAACAACTGGCCCGAACCGGATCGGGTGGGGCGGCAGGAGCTCGAGATTGTTATGGGGAACGAGCACATTTCGTTCACCACGTCGAAGATTGGGTCTCTTGTTGATGTTCAGAGCAGTGCTGACCCCGAGGGTCTTCGCATCTTTTACTATCTTGTTCAGGATTTGAAGTGCTTTGTCTTCTCTCTTATTTCACTTCACTTCAAGATCAAGCCTATCTAATGTGTTTGCAATAATATGAGTTCATCCTCTGGGGAATATGTACTTTAACAACTATCACTTTTCTGCTAATGGAGTTCGACCTCTGATTGAGTGACTTTAATCTTGAAATGATTTGGTTCTGTATGGGTGATTACATGAATTGGAATTTTAAATTTGAGGGTATAACCCTTGTTCTAAAGTGTTGATTGGTTTGGTTTTTATGGATGGATTAGTTATTCTTTCGTTCTCTTGA

Coding sequences of Glyma03g25790

Limit To All Plant Sequences

>Glyma03g25790.1   sequence type=CDS   gene model=Glyma03g25790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGCGAAGAGCAGAACGGCGAATTCTACCTGCGTTACTACGTCGGTCACAAGGGCAAGTTTGGTCACGAGTTCCTGGAGTTCGAGTTCCGCCCAGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAAAACGACACCATCATCCGCAAGGAGGTTTACCTAACCCCCGCCGTTCTCCGCGAGTGCCGTCGCATCATCGCCGAGAGCGAGATTATGAAGGAAGATGATAACAACTGGCCCGAACCGGATCGGGTGGGGCGGCAGGAGCTCGAGATTGTTATGGGGAACGAGCACATTTCGTTCACCACGTCGAAGATTGGGTCTCTTGTTGATGTTCAGAGCAGTGCTGACCCCGAGGGTCTTCGCATCTTTTACTATCTTGTTCAGGAAATTGTGAACAAATGTGGCCACAATTGCAGTTGCAGGGACCCGGAAAACTTTTTTGTTGCAGCGAAATTATGGTTGTGTTGCGGTTGTGGTGATCTCGTGATCTCGAAAACCTTGAGATTTGAAGTGCTTTGTCTTCTCTCTTATTTCACTTCACTTCAAGATCAAGCCTATCTAATGTGTTTGCAATAA

>Glyma03g25790.2   sequence type=CDS   gene model=Glyma03g25790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGCGAAGAGCAGAACGGCGAATTCTACCTGCGTTACTACGTCGGTCACAAGGGCAAGTTTGGTCACGAGTTCCTGGAGTTCGAGTTCCGCCCAGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAAAACGACACCATCATCCGCAAGGAGGTTTACCTAACCCCCGCCGTTCTCCGCGAGTGCCGTCGCATCATCGCCGAGAGCGAGATTATGAAGGAAGATGATAACAACTGGCCCGAACCGGATCGGGTGGGGCGGCAGGAGCTCGAGATTGTTATGGGGAACGAGCACATTTCGTTCACCACGTCGAAGATTGGGTCTCTTGTTGATGTTCAGAGCAGTGCTGACCCCGAGGGTCTTCGCATCTTTTACTATCTTGTTCAGGATTTGAAGTGCTTTGTCTTCTCTCTTATTTCACTTCACTTCAAGATCAAGCCTATCTAA

>Glyma03g25790.3   sequence type=CDS   gene model=Glyma03g25790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGCGAAGAGCAGAACGGCGAATTCTACCTGCGTTACTACGTCGGTCACAAGGGCAAGTTTGGTCACGAGTTCCTGGAGTTCGAGTTCCGCCCAGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAAAACGACACCATCATCCGCAAGGAGGTTTACCTAACCCCCGCCGTTCTCCGCGAGTGCCGTCGCATCATCGCCGAGAGCGAGATTATGAAGGAAGATGATAACAACTGGCCCGAACCGGATCGGGTGGGGCGGCAGGAGCTCGAGATTGTTATGGGGAACGAGCACATTTCGTTCACCACGTCGAAGATTGGGTCTCTTGTTGATGTTCAGAGCAGTGCTGACCCCGAGGGTCTTCGCATCTTTTACTATCTTGTTCAGGATTTGAAGTGCTTTGTCTTCTCTCTTATTTCACTTCACTTCAAGATCAAGCCTATCTAA

>Glyma03g25790.4   sequence type=CDS   gene model=Glyma03g25790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGCGAAGAGCAGAACGGCGAATTCTACCTGCGTTACTACGTCGGTCACAAGGGCAAGTTTGGTCACGAGTTCCTGGAGTTCGAGTTCCGCCCAGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAAAACGACACCATCATCCGCAAGGAGGTTTACCTAACCCCCGCCGTTCTCCGCGAGTGCCGTCGCATCATCGCCGAGAGCGAGATTATGAAGGAAGATGATAACAACTGGCCCGAACCGGATCGGGTGGGGCGGCAGGAGCTCGAGATTGTTATGGGGAACGAGCACATTTCGTTCACCACGTCGAAGATTGGGTCTCTTGTTGATGTTCAGAGCAGTGCTGACCCCGAGGGTCTTCGCATCTTTTACTATCTTGTTCAGGATTTGAAGTGCTTTGTCTTCTCTCTTATTTCACTTCACTTCAAGATCAAGCCTATCTAA

Predicted protein sequences of Glyma03g25790

Limit To All Plant Sequences

>Glyma03g25790.1   sequence type=predicted peptide   gene model=Glyma03g25790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEEQNGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPAVLRECRRIIAESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSADPEGLRIFYYLVQEIVNKCGHNCSCRDPENFFVAAKLWLCCGCGDLVISKTLRFEVLCLLSYFTSLQDQAYLMCLQ*

>Glyma03g25790.2   sequence type=predicted peptide   gene model=Glyma03g25790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEEQNGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPAVLRECRRIIAESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSADPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI*

>Glyma03g25790.3   sequence type=predicted peptide   gene model=Glyma03g25790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEEQNGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPAVLRECRRIIAESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSADPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI*

>Glyma03g25790.4   sequence type=predicted peptide   gene model=Glyma03g25790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEEQNGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPAVLRECRRIIAESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSADPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain