Report for Sequence Feature Glyma03g25720
Feature Type: gene_model
Chromosome: Gm03
Start: 32961390
stop: 32964368
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g25720
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G11290 AT
Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr1:3791454-3793883 REVERSE LENGTH=809
SoyBase E_val: 0 ISS
GO:0016556 GO-bp
Annotation by Michelle Graham. GO Biological Process: mRNA modification
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0004519 GO-mf
Annotation by Michelle Graham. GO Molecular Function: endonuclease activity
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_G4XE11 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Organelle transcript processing 82 (Fragment) n=1 Tax=Raphanus sativus RepID=G4XE11_RAPSA
SoyBase E_val: 0 ISS
UniRef100_I1JMN6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JMN6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma03g25720
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma03g25720 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g108500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g25720
Coding sequences of Glyma03g25720
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g25720.1 sequence type=CDS gene model=Glyma03g25720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTTACATGCAATTCCCATCTCTCTAGTGCTCCTCCTTCACCCCTTCCAATCTCAATTCATAGTTTTCAAAACACTAATCAGTACCACTCCCCCACTTTGAAATTCACTCAATCCCAACCAAAACCAAATGTGCCTCACATCCAACAAGAACTTCACATCAACCTCAATGAAACACAACAACTCCATGGCCACTTCATCAAAACCAGTTCCAATTGCAGTTATCGAGTCCCTCTTGCAGCACTTGAATCCTATTCTAGCAATGCAGCAATTCATAGCTTCCTAATAACATCTTACATCAAGAACAACTGCCCTGCAGATGCGGCGAAAATCTACGCCTATATGCGTGGGACAGACACTGAAGTGGACAATTTTGTCATACCATCTGTTCTTAAAGCATGTTGTCTTATACCTTCATTTCTACTAGGACAAGAGGTGCATGGTTTTGTGGTGAAAAATGGATTTCATGGGGATGTTTTTGTGTGTAATGCTTTAATCATGATGTACAGTGAGGTAGGAAGCTTGGCATTGGCACGCTTATTGTTTGATAAGATTGAGAACAAGGATGTTGTTTCTTGGAGCACTATGATTAGGAGCTATGATAGGAGTGGGTTGCTTGATGAAGCATTGGACCTTTTGAGAGATATGCATGTTATGAGAGTGAAGCCTAGTGAAATTGGAATGATAAGCATCACTCATGTCTTGGCAGAACTTGCTGATTTGAAATTGGGGAAAGCCATGCATGCTTATGTAATGAGAAATGGGAAGTGTGGAAAATCAGGAGTTCCTCTATGTACTGCTTTGATTGATATGTATGTTAAATGTGAAAATTTAGCTTATGCAAGAAGGGTTTTTGATGGCTTGTCTAAGGCTAGTATCATTTCTTGGACTGCTATGATTGCAGCCTATATTCATTGCAATAATTTGAATGAAGGTGTGAGATTGTTTGTCAAAATGCTAGGAGAAGGTATGTTTCCAAATGAAATTACGATGCTTAGTTTGGTCAAAGAATGTGGCACAGCAGGAGCTTTAGAATTAGGCAAGTTGTTACATGCTTTCACATTAAGAAATGGGTTTACCTTGTCTTTGGTTCTGGCCACTGCTTTTATTGATATGTATGGCAAATGTGGTGATGTTAGAAGTGCAAGATCTGTTTTTGATAGCTTCAAGAGCAAAGATTTAATGATGTGGAGTGCCATGATTTCATCTTATGCACAAAACAATTGCATAGATGAGGCTTTTGATATCTTTGTTCACATGACTGGTTGTGGAATAAGGCCAAATGAGAGAACCATGGTTAGCCTACTTATGATATGTGCAAAAGCTGGATCACTTGAAATGGGTAAGTGGATCCATTCTTACATAGACAAGCAAGGAATTAAAGGAGATATGATTCTTAAAACATCTTTTGTGGACATGTATGCCAACTGTGGAGACATAGATACAGCTCATAGATTGTTTGCTGAGGCCACGGACCGAGACATTTCAATGTGGAATGCCATGATATCTGGTTTTGCAATGCATGGTCATGGTGAGGCAGCATTAGAACTCTTTGAAGAAATGGAAGCACTAGGTGTTACCCCTAATGACATCACATTCATTGGAGCTCTTCATGCTTGTAGTCACTCAGGATTGTTACAAGAAGGAAAGAGGCTGTTTCACAAAATGGTTCATGAATTTGGGTTTACCCCAAAAGTTGAGCACTATGGTTGTATGGTGGATCTTCTTGGTAGAGCTGGATTGCTTGATGAAGCACATGAACTAATTAAAAGCATGCCAATGAGGCCAAACATCGCTGTATTTGGATCCTTTCTTGCTGCATGCAAGCTTCACAAAAATATCAAACTTGGGGAATGGGCAGCAAAACAGTTTCTATCATTGGAACCCCATAAAAGTGGGTACAATGTTCTAATGTCTAACATATATGCATCAGCAAATAGATGGGGTGATGTTGCATATATAAGGAGAGCTATGAAAGATGAGGGAATCGTTAAAGAACCAGGTGTTAGCTCCATTGAAGTGAATGGATTACTTCATGAATTCATAATGGGAGATAGGGAACACCCAGATGCTAAAAAAGTTTACGAAATGATCGATGAGATGAGAGAAAAACTAGAAGATGCTGGATACACCCCAGATGTATCTTGTGTTCTGCATAACATAGACAAGGAAAAGAAAGTAAGTGCACTCAACTATCATAGTGAAAAACTGGCAATGGCATATGGACTGATTAGCACAGCTCCTGGTGTTCCAATTAGAATTGTGAAGAATCTTAGAGTTTGTGATGATTGTCACAATGCAACCAAGTTACTGTCCAAGATTTATGGGAGGGAGATCATAGTGAGGGACCGCAATCGTTTTCATCACTTTAAAGAAGGATCTTGTTCTTGTTGTGATTATTGGTAA
Predicted protein sequences of Glyma03g25720
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g25720.1 sequence type=predicted peptide gene model=Glyma03g25720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVTCNSHLSSAPPSPLPISIHSFQNTNQYHSPTLKFTQSQPKPNVPHIQQELHINLNETQQLHGHFIKTSSNCSYRVPLAALESYSSNAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDEMREKLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEKLAMAYGLISTAPGVPIRIVKNLRVCDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCCDYW*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
