SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G02145 | AT | Annotation by Michelle Graham. TAIR10: homolog of asparagine-linked glycosylation 12 | chr1:404627-408485 FORWARD LENGTH=497 | SoyBase | E_val: 0 | ISS |
| KOG2516 | KOG | Protein involved in dolichol pathway for N-glycosylation (mannosyltransferase family) | JGI | ISS | |
| PTHR22760 | Panther | GLYCOSYLTRANSFERASE | JGI | ISS | |
| PF03901 | PFAM | Alg9-like mannosyltransferase family | JGI | ISS | |
| UniRef100_A8MR93 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase n=3 Tax=Arabidopsis thaliana RepID=ALG12_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023398FC | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023398FC related cluster n=1 Tax=unknown RepID=UPI00023398FC | SoyBase | E_val: 0 | ISS |
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Glyma03g25680 not represented in the dataset |
Glyma03g25680 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g13150 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g108200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g25680.2 sequence type=transcript gene model=Glyma03g25680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAGTTGTCTAAAAAGATGACCGAATTGGCTAGGAAATGAAAGCCCAATACTTCTGTAAGGCCCACGAAGCCCATTTCGTTTTTGTATCGCCTCTGGCATTCTACACCCACTCTGAAACAAACCACACAACAATGGCTTCCAGTTCCAAATCGAAGATTTTTCTACAGCGATACGGTTACGATTTTCTGTTGGGATCAATCGCTGCTGTCTACGTAATCACTGTGCCTTACACTAAGGTCGAAGAGAGTTTCAACGTTCAGGCAATGCACGATATTCTCCATCACAGGCTGAACTTAGACAATTATGATCATCTGGAATTTCCTGGGGTGGTTCCTCGAACTTTCCTCGGTGCTTTGCTTGTGTCCATAATTGCATCACCGTTTGTGTTAACTGCAAGTTTGCTGCATTTGCCAAAGTTTTATGCTCTTCTCATAGTTCGGATGGCCCTAGGGGGCATAGTACTATACACGCTAAGATTCTTTCGACATCAGATAAGGAATAAGTTTGGACATCAAGTAGAAGCCTTCTTTGTGATATTAACTGCCACTCAGTTTCATTTTCTGTTCTATTGTACCCGTCCGCTTCCCAACATTCTTGCTCTGAGCCTTGTGAATTTAGCATATGGATACTGGTTCGAGGGACGTTTTTATGCGGCTCTAAACTCTCTGATCTTTGCTACAGCTGTACTCAGATGTGACATGCTGTTACTTCTTTGCCCCATTGGGCTGCAACTTCTTTTGACAAAAAAAATTTCAGTGTGGGGTGCTCTAAAACACTGCACTGGGATGGCTCTCTTCTGCATAGGTCTAACCATATTGGTTGATTCAATTATGTGGAAAAGGTTATTGTGGCCTGAATTTGAAGTCTTTTGGTTTAACTCTGTACTAAACAAGAGCTCTGAATGGGGAACACATGCTTTCCATTGGTACTTCACCTCAGCACTTCCTCGTTCACTACTTGCTGCATATCCACTTTCACTATTTGGCCTTTTTGTAGACAGAAGGGTACGATCTTTCACTTTTCCAGTTCTTGCCTTCATTTTGCTTTATTCTAAGCTTCCCCACAAGGAGCTTCGTTTTATCATAAGTTCAGTTCCAATATTTAACTTGTCTGCTTCAATTGCTTCTAACAGAATTTACAACAATAAGAAAAAGATGATTTGGAACTTGCTTTTCCTCATTTTGTTGGGATTACTTTTAATGAGTCTTGCAGGCACCATCACAAGTTTCATGGCATCATACTGGAACTATCCTAGTGGGCATGCCTTAAAAGAATTGCATGGAATTGGCTTTCATAATGATACTGATGAACGGTGGGTGCACATTGATACATTTTCTGCCATGAATGGAATATCTCGCTTTTGTGAAAGTGAGTTCCCATGGAGGTATTCTAAAGAAGAACAAATTAGCTTGCAAGAATTTCATCAGAGAAATTTTACTTTTCTTATAAATGAACATCCTGCGATCAATGGATTCAAGTGCCTATTTACTGAAGATGGGTTCTCAAGAGTCCGCCTGAAACCTGGCTATCCACCAATTTTACTGGTTAAAGAGCCCAAAGTGTATGTTCATGGAAATTTAGAAAACCAGAATATTTTCAGCCAAAATTGGCCTGGCTGCCCATAATGCTGTGTCTGGTATGATAGTCTATTTGAAATCATCAGGTTTGAAGGGTGTGGGTATCCTTTGCCGCCCTTTTTTCTTAGTTACCAATGAGTAAGGAGTGGGGAGGAAGTGAAAGTTGGTATTGTGACCCCTACTAACAGTCCCGTGTCTTCAGTATTAATTAGAATGTGCATATGGGTACAATAGCTTTTCTTGTAGCATTTCAAACATTGATTCTCGGATGTTGCTATGTCTGATTTTTTAATTTCATATAGAATATTCGGTTCAACAATCTGGTTTGGGATTAACTTCATTTATGCTGGAAAACTTTTTGGCTCAATTCTGGTAATTGGTGTATACTGTTTGCTAGAGCAGAATCTTCGGTTA
>Glyma03g25680.1 sequence type=CDS gene model=Glyma03g25680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGCCCAATACTTCTGTAAGGCCCACGAAGCCCATTTCGTTTTTGTATCGCCTCTGGCATTCTACACCCACTCTGAAACAAACCACACAACAATGGCTTCCAGTTCCAAATCGAAGATTTTTCTACAGCGATACGGTTACGATTTTCTGTTGGGATCAATCGCTGCTGTCTACGTAATCACTGTGCCTTACACTAAGGTCGAAGAGAGTTTCAACGTTCAGGCAATGCACGATATTCTCCATCACAGGCTGAACTTAGACAATTATGATCATCTGGAATTTCCTGGGGTGGTTCCTCGAACTTTCCTCGGTGCTTTGCTTGTGTCCATAATTGCATCACCGTTTGTGTTAACTGCAAGTTTGCTGCATTTGCCAAAGTTTTATGCTCTTCTCATAGTTCGGATGGCCCTAGGGGGCATAGTACTATACACGCTAAGATTCTTTCGACATCAGATAAGGAATAAGTTTGGACATCAAGTAGAAGCCTTCTTTGTGATATTAACTGCCACTCAGTTTCATTTTCTGTTCTATTGTACCCGTCCGCTTCCCAACATTCTTGCTCTGAGCCTTGTGAATTTAGCATATGGATACTGGTTCGAGGGACGTTTTTATGCGGCTCTAAACTCTCTGACAAAAAAAATTTCAGTGTGGGGTGCTCTAAAACACTGCACTGGGATGGCTCTCTTCTGCATAGGTCTAACCATATTGGTTGATTCAATTATGTGGAAAAGGTTATTGTGGCCTGAATTTGAAGTCTTTTGGTTTAACTCTGTACTAAACAAGAGCTCTGAATGGGGAACACATGCTTTCCATTGGTACTTCACCTCAGCACTTCCTCGTTCACTACTTGCTGCATATCCACTTTCACTATTTGGCCTTTTTGTAGACAGAAGGGTACGATCTTTCACTTTTCCAGTTCTTGCCTTCATTTTGCTTTATTCTAAGCTTCCCCACAAGGAGCTTCGTTTTATCATAAGTTCAGTTCCAATATTTAACTTGTCTGCTTCAATTGCTTCTAACAGAATTTACAACAATAAGAAAAAGATGATTTGGAACTTGCTTTTCCTCATTTTGTTGGGATTACTTTTAATGAGTCTTGCAGGCACCATCACAAGTTTCATGGCATCATACTGGAACTATCCTAGTGGGCATGCCTTAAAAGAATTGCATGGAATTGGCTTTCATAATGATACTGATGAACGGTGGGTGCACATTGATACATTTTCTGCCATGAATGGAATATCTCGCTTTTGTGAAAGTGAGTTCCCATGGAGGTATTCTAAAGAAGAACAAATTAGCTTGCAAGAATTTCATCAGAGAAATTTTACTTTTCTTATAAATGAACATCCTGCGATCAATGGATTCAAGTGCCTATTTACTGAAGATGGGTTCTCAAGAGTCCGCCTGAAACCTGGCTATCCACCAATTTTACTGGTTAAAGAGCCCAAAGTGTATGTTCATGGAAATTTAGAAAACCAGAATATTTTCAGCCAAAATTGGCCTGGCTGCCCATAA >Glyma03g25680.2 sequence type=CDS gene model=Glyma03g25680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGCCCAATACTTCTGTAAGGCCCACGAAGCCCATTTCGTTTTTGTATCGCCTCTGGCATTCTACACCCACTCTGAAACAAACCACACAACAATGGCTTCCAGTTCCAAATCGAAGATTTTTCTACAGCGATACGGTTACGATTTTCTGTTGGGATCAATCGCTGCTGTCTACGTAATCACTGTGCCTTACACTAAGGTCGAAGAGAGTTTCAACGTTCAGGCAATGCACGATATTCTCCATCACAGGCTGAACTTAGACAATTATGATCATCTGGAATTTCCTGGGGTGGTTCCTCGAACTTTCCTCGGTGCTTTGCTTGTGTCCATAATTGCATCACCGTTTGTGTTAACTGCAAGTTTGCTGCATTTGCCAAAGTTTTATGCTCTTCTCATAGTTCGGATGGCCCTAGGGGGCATAGTACTATACACGCTAAGATTCTTTCGACATCAGATAAGGAATAAGTTTGGACATCAAGTAGAAGCCTTCTTTGTGATATTAACTGCCACTCAGTTTCATTTTCTGTTCTATTGTACCCGTCCGCTTCCCAACATTCTTGCTCTGAGCCTTGTGAATTTAGCATATGGATACTGGTTCGAGGGACGTTTTTATGCGGCTCTAAACTCTCTGATCTTTGCTACAGCTGTACTCAGATGTGACATGCTGTTACTTCTTTGCCCCATTGGGCTGCAACTTCTTTTGACAAAAAAAATTTCAGTGTGGGGTGCTCTAAAACACTGCACTGGGATGGCTCTCTTCTGCATAGGTCTAACCATATTGGTTGATTCAATTATGTGGAAAAGGTTATTGTGGCCTGAATTTGAAGTCTTTTGGTTTAACTCTGTACTAAACAAGAGCTCTGAATGGGGAACACATGCTTTCCATTGGTACTTCACCTCAGCACTTCCTCGTTCACTACTTGCTGCATATCCACTTTCACTATTTGGCCTTTTTGTAGACAGAAGGGTACGATCTTTCACTTTTCCAGTTCTTGCCTTCATTTTGCTTTATTCTAAGCTTCCCCACAAGGAGCTTCGTTTTATCATAAGTTCAGTTCCAATATTTAACTTGTCTGCTTCAATTGCTTCTAACAGAATTTACAACAATAAGAAAAAGATGATTTGGAACTTGCTTTTCCTCATTTTGTTGGGATTACTTTTAATGAGTCTTGCAGGCACCATCACAAGTTTCATGGCATCATACTGGAACTATCCTAGTGGGCATGCCTTAAAAGAATTGCATGGAATTGGCTTTCATAATGATACTGATGAACGGTGGGTGCACATTGATACATTTTCTGCCATGAATGGAATATCTCGCTTTTGTGAAAGTGAGTTCCCATGGAGGTATTCTAAAGAAGAACAAATTAGCTTGCAAGAATTTCATCAGAGAAATTTTACTTTTCTTATAAATGAACATCCTGCGATCAATGGATTCAAGTGCCTATTTACTGAAGATGGGTTCTCAAGAGTCCGCCTGAAACCTGGCTATCCACCAATTTTACTGGTTAAAGAGCCCAAAGTGTATGTTCATGGAAATTTAGAAAACCAGAATATTTTCAGCCAAAATTGGCCTGGCTGCCCATAA
>Glyma03g25680.1 sequence type=predicted peptide gene model=Glyma03g25680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKAQYFCKAHEAHFVFVSPLAFYTHSETNHTTMASSSKSKIFLQRYGYDFLLGSIAAVYVITVPYTKVEESFNVQAMHDILHHRLNLDNYDHLEFPGVVPRTFLGALLVSIIASPFVLTASLLHLPKFYALLIVRMALGGIVLYTLRFFRHQIRNKFGHQVEAFFVILTATQFHFLFYCTRPLPNILALSLVNLAYGYWFEGRFYAALNSLTKKISVWGALKHCTGMALFCIGLTILVDSIMWKRLLWPEFEVFWFNSVLNKSSEWGTHAFHWYFTSALPRSLLAAYPLSLFGLFVDRRVRSFTFPVLAFILLYSKLPHKELRFIISSVPIFNLSASIASNRIYNNKKKMIWNLLFLILLGLLLMSLAGTITSFMASYWNYPSGHALKELHGIGFHNDTDERWVHIDTFSAMNGISRFCESEFPWRYSKEEQISLQEFHQRNFTFLINEHPAINGFKCLFTEDGFSRVRLKPGYPPILLVKEPKVYVHGNLENQNIFSQNWPGCP* >Glyma03g25680.2 sequence type=predicted peptide gene model=Glyma03g25680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKAQYFCKAHEAHFVFVSPLAFYTHSETNHTTMASSSKSKIFLQRYGYDFLLGSIAAVYVITVPYTKVEESFNVQAMHDILHHRLNLDNYDHLEFPGVVPRTFLGALLVSIIASPFVLTASLLHLPKFYALLIVRMALGGIVLYTLRFFRHQIRNKFGHQVEAFFVILTATQFHFLFYCTRPLPNILALSLVNLAYGYWFEGRFYAALNSLIFATAVLRCDMLLLLCPIGLQLLLTKKISVWGALKHCTGMALFCIGLTILVDSIMWKRLLWPEFEVFWFNSVLNKSSEWGTHAFHWYFTSALPRSLLAAYPLSLFGLFVDRRVRSFTFPVLAFILLYSKLPHKELRFIISSVPIFNLSASIASNRIYNNKKKMIWNLLFLILLGLLLMSLAGTITSFMASYWNYPSGHALKELHGIGFHNDTDERWVHIDTFSAMNGISRFCESEFPWRYSKEEQISLQEFHQRNFTFLINEHPAINGFKCLFTEDGFSRVRLKPGYPPILLVKEPKVYVHGNLENQNIFSQNWPGCP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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