|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G25520 | AT | Annotation by Michelle Graham. TAIR10: ribosomal protein L5 | chr3:9269573-9270434 REVERSE LENGTH=190 | SoyBase | E_val: 1.00E-63 | ISS |
GO:0001510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA methylation | SoyBase | N/A | ISS |
GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
GO:0006913 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleocytoplasmic transport | SoyBase | N/A | ISS |
GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
GO:0009955 | GO-bp | Annotation by Michelle Graham. GO Biological Process: adaxial/abaxial pattern specification | SoyBase | N/A | ISS |
GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
GO:0010015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root morphogenesis | SoyBase | N/A | ISS |
GO:0042254 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis | SoyBase | N/A | ISS |
GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
GO:0022625 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit | SoyBase | N/A | ISS |
GO:0022626 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome | SoyBase | N/A | ISS |
GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
GO:0008097 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 5S rRNA binding | SoyBase | N/A | ISS |
PTHR23410 | Panther | RIBOSOMAL PROTEIN L5-RELATED | JGI | ISS | |
PF00861 | PFAM | Ribosomal L18p/L5e family | JGI | ISS | |
UniRef100_B9SEY9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein L5, putative n=1 Tax=Ricinus communis RepID=B9SEY9_RICCO | SoyBase | E_val: 5.00E-69 | ISS |
UniRef100_I1KHZ4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KHZ4_SOYBN | SoyBase | E_val: 7.00E-81 | ISS |
Glyma03g24803 not represented in the dataset |
Glyma03g24803 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.03g103300 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g24803.1 sequence type=CDS gene model=Glyma03g24803 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGCTACTGGAGAGGATTATTCCATGGAACCTGCTGAGAGCAGGAGGCCATTTTGTGCTCTCCTTGACGTTGGTCTTATTAGGACTACAACTGGTAACCATGTGTTTGGTGCCCTTAAGGGAGCTCTGGATGGGGGTTTGGATATTCCTCACAGTGACAAGAGGTTTGTTGGGTTTTATAAGGAGAAGAAGGAGCTTGATGCAGAGGTTCATCTCAAATATGCTTTTGGTGGACATAATGGTATTGAGGCACTGTATAAGAAGGTTCATGCTGCCATCCAGGCTGATCCTACTCTCAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGGTACAACTTGAAGAAGCTGACCTATGAGGACAGGAAGGCTAAGTTTATTTCACGCGTGGCGACTCTCAACTCTACTGCCGATAACAATGAAGATGATGAGTGA
>Glyma03g24803.1 sequence type=predicted peptide gene model=Glyma03g24803 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKATGEDYSMEPAESRRPFCALLDVGLIRTTTGNHVFGALKGALDGGLDIPHSDKRFVGFYKEKKELDAEVHLKYAFGGHNGIEALYKKVHAAIQADPTLKKSDKQPPKEHKRYNLKKLTYEDRKAKFISRVATLNSTADNNEDDE*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||