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Report for Sequence Feature Glyma03g24776

Feature Type:gene_model
Chromosome:Gm03
Start:31703524
stop:31703989
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G04770AT Annotation by Michelle Graham. TAIR10: 40s ribosomal protein SA B | chr3:1309544-1310846 REVERSE LENGTH=280 SoyBaseE_val: 7.00E-26ISS
GO:0000028GO-bp Annotation by Michelle Graham. GO Biological Process: ribosomal small subunit assembly SoyBaseN/AISS
GO:0000447GO-bp Annotation by Michelle Graham. GO Biological Process: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) SoyBaseN/AISS
GO:0000461GO-bp Annotation by Michelle Graham. GO Biological Process: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) SoyBaseN/AISS
GO:0006407GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA export from nucleus SoyBaseN/AISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0006606GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0022627GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit SoyBaseN/AISS
GO:0030686GO-cc Annotation by Michelle Graham. GO Cellular Compartment: 90S preribosome SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
PTHR11489Panther RIBOSOMAL PROTEIN S2, EUKARYOTIC AND ARCHAEAL FORM JGI ISS
PTHR11489:SF7Panther 40S RIBOSOMAL PROTEIN SA JGI ISS
PF00318PFAM Ribosomal protein S2 JGI ISS
UniRef100_O22518UniRef Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein SA n=1 Tax=Glycine max RepID=RSSA_SOYBN SoyBaseE_val: 6.00E-27ISS
UniRef100_UPI000189D1B4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000189D1B4 related cluster n=1 Tax=unknown RepID=UPI000189D1B4 SoyBaseE_val: 3.00E-27ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g24776 not represented in the dataset

Glyma03g24776 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma03g24776.1   sequence type=CDS   gene model=Glyma03g24776   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCATTGCTACGAATGTCGTCGCCGCCCCACCATGCCAGCTCTTCCAGAAAGAACCCGACATCCAGATGATGTTGGCCGTCGACGTCCACCTCGACACCAAGAACTGCGACTTCCAAATGGAACATAACATCTTCAAGCACCGCAACGACGGGATTTACATTATTAACCTTGGGAAGACGTGGGAGAAGCTTCAGCTAGCAACCTTGTTAATTTCTTTTCTAGCACCATATGCTTTTAATCATGTTAATATACAACATTTGGACTATTATTTGCAACTTAAAAACCCTTGA

>Glyma03g24776.1   sequence type=predicted peptide   gene model=Glyma03g24776   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIATNVVAAPPCQLFQKEPDIQMMLAVDVHLDTKNCDFQMEHNIFKHRNDGIYIINLGKTWEKLQLATLLISFLAPYAFNHVNIQHLDYYLQLKNP*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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