SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G46080 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G01550.2); Has 153 Blast hits to 139 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18948317-18949360 REVERSE LENGTH=347 | SoyBase | E_val: 3.00E-74 | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| UniRef100_G7KS66 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein BPS1 n=1 Tax=Medicago truncatula RepID=G7KS66_MEDTR | SoyBase | E_val: 3.00E-109 | ISS |
| UniRef100_UPI000233759A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233759A related cluster n=1 Tax=unknown RepID=UPI000233759A | SoyBase | E_val: 3.00E-159 | ISS |
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Glyma03g24390 not represented in the dataset |
Glyma03g24390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
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| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g24390.2 sequence type=CDS gene model=Glyma03g24390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTTTAGCTATGAAGTCACTTTGTGAAAGTCACAATGACATATGGACCCTTATGACTGCCCTTGAGCTTCCTGTGAGTGATTGGGAGGACAAATGGATTGATGTGTACTTGGACATAAGTTCAAAGTTGCTAGACATTTGCAATGCATTTAGCTCCGAGCTTTCATGTCTGAACCAGGGAAACCTTCCTCTTAAGTGTGCACTGCACAATTTAGACTCTGCCTCTTCAAAGCAGTATCTTCAGGCATGTTCCCTACTTGATGATTGGAGACAGCATGTTAGTTCTAGGAACCCTAGAATTGAGAAATGTAGTTTTATGTTAGATAATCTTGTGGGCTCACTTGATCTTCCTAAGGTTAAAAATTTTGCCAAAGGAAAGAATCTTGTAAATGAGGAAATTAGAGTTAGATTTTCTGGTGGTAAATTTACTGTATTGAATGAGTTGGAAGCGGTTGATGCCTCTGTGAAGATATTATATCCTACTATTCAGGATGGTACTGTTGAGGAATTACGTGTAAGTGCCGAGAAGCTTTCACAAGGAATTGATCTTCTTGCAAAGGGAGTAGATGAGTTTTTTCAAGCCGTTATGACTAGTCGCGATACTTTGCTCAGCTCTGTGAGGTTTGATAAAACTGTAAATGATCGTTCCCCAGGCCCAATGACCTCTGGCTTCTCAACAATGCCTATGACCACAGGATCAACAATGGCTAAAATCGCTCCTAATGGAATCTAA
>Glyma03g24390.2 sequence type=predicted peptide gene model=Glyma03g24390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTLAMKSLCESHNDIWTLMTALELPVSDWEDKWIDVYLDISSKLLDICNAFSSELSCLNQGNLPLKCALHNLDSASSKQYLQACSLLDDWRQHVSSRNPRIEKCSFMLDNLVGSLDLPKVKNFAKGKNLVNEEIRVRFSGGKFTVLNELEAVDASVKILYPTIQDGTVEELRVSAEKLSQGIDLLAKGVDEFFQAVMTSRDTLLSSVRFDKTVNDRSPGPMTSGFSTMPMTTGSTMAKIAPNGI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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