Glyma03g24280 - SoyBase

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Report for Sequence Feature Glyma03g24280

Feature Type:	gene_model
Chromosome:	Gm03
Start:	30993920
stop:	31002179
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g24280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44530	AT	Annotation by Michelle Graham. TAIR10: Phosphoribosyltransferase family protein \| chr2:18383732-18385974 FORWARD LENGTH=394	SoyBase	E_val: 0	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0006783	GO-bp	Annotation by Michelle Graham. GO Biological Process: heme biosynthetic process	SoyBase	N/A	ISS
GO:0009116	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleoside metabolic process	SoyBase	N/A	ISS
GO:0009156	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribonucleoside monophosphate biosynthetic process	SoyBase	N/A	ISS
GO:0009165	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0044249	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0004749	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ribose phosphate diphosphokinase activity	SoyBase	N/A	ISS
KOG1448	KOG	Ribose-phosphate pyrophosphokinase	JGI		ISS
PTHR10210	Panther	RIBOSE-PHOSPHATE PYROPHOSPHOKINASE	JGI		ISS
PF00156	PFAM	Phosphoribosyl transferase domain	JGI		ISS
UniRef100_I1JMH3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Ribose-phosphate pyrophosphokinase n=1 Tax=Glycine max RepID=I1JMH3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JMH3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribose-phosphate pyrophosphokinase n=1 Tax=Glycine max RepID=I1JMH3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g24280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g24280 not represented in the dataset	Glyma03g24280 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g24280

Paralog	Evidence	Comments
Glyma07g12660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g24280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g100800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g24280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g24280

Limit To All Plant Sequences

>Glyma03g24280.2   sequence type=transcript   gene model=Glyma03g24280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGAAACCCAATCTGAAATTGAGCATCGAGTCCAAAGGTTTCGAAACGCAATGTCCACTCTGCTTCACTCCGCTCCCACTTCTTCTCCTTCCTTCTCTCGGATCATCACTCCTCGTTTCGCTTTCGCTCCAATCACTCGCATCTCTCTCCGAAACGGCGTCCGTAGCAAGGCGATCGAAGCAGTGAAGTTGGAGAATGGAAGGCCGAGCGCGAGCGAGTTCGTAGTCAGCGGAAGCGGAAACGCAATTCCGAGTTACGTCGTGGCGCCAAACGCGCGTGTTCAGGATTTGGTTAACCGAAACGACACTCGCCTCCGGATATTCTCCGGCACTGCCAATCCGGCTCTTGCTCAGGAAATTGCATGCTACCTGGGCCTGGAGCTAGGAAAAATTAAGATAAAGCGTTTTGCTGATGGTGAGATATATGTCCAGCTGCAAGAGAGTGTCAGGGGGTGTGATGTGTTTCTTGTGCAGCCCACATGTCCTCCTGCAAATGAGAATCTTATGGAGCTTCTCATAATGATTGATGCCTGCAGGAGGGCTTCAGCCAAAAATATTACTGCTGTCATTCCATATTTTGGATATGCCAGAGCTGATAGAAAGACCCAAGGACGTGAATCCATTGCTGCCAAGCTTGTAGCAAATTTAATTACAGAAGCAGGTGCAAATCGTGTACTTGCTTGTGACCTCCATTCTGGGCAGTCCATGGGCTATTTTGATATTCCAGTTGATCATGTGTATGGCCAGCCTGTTATACTTGATTACCTTGCCAGCAAGACTATTTGTTCAGATGATTTGGTAGTTGTCTCGCCAGATGTTGGTGGTGTTGCCAGAGCACGTGCTTTTGCCAAAAAATTATCTGATGCTCCTTTAGCTATTGTTGATAAAAGGCGCCATGGGCATAATGTTGCTGAGGTGATGAATTTGATTGGTGATGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTGGGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAGTCTATGCATGCACTACACATGCTGTTTTCAGTCCTCCTGCTATTGAGAGGTTGTCAAGTGGTTTGTTCCAAGAAGTTATCATAACTAATACAATTCCAGTGGCAGAACAGAACTATTTCCCTCAATTAACTGTCTTGTCGGTGGCAAACCTTCTGGGCGAGACTGTTTGGCGTGTTCATGATGATTGCTCAGTGAGTAGCATATTTCTGTAGAATAAGTTTAGTTAGTTATTTTTCATTCATGATATAGAGAAAACGAAACCACACTCAATACTCTTGCACATGCATGCTTGCGTACATATATTTATCTATTTTTTTTTCTAACAAAATAATAAAAAAATTCGTTATGTTATACAGAATTGTGTCTTCCTGTTCATCACTAAATTGTATTGATAATTGCATGTTTAGTGTTAGATTTGATTTCTATTCAGAGTAGTATGTCGCCCTTTGCTCTTTTGTTAAACAAAATTTCAGTTAAGCTAGAACTTGTACTTTTGTATGGGATAGAGTGGGTGCCAAGACTAGATTTATATTGCAAACTTTTTTTCTTCTTTCTTTTATGTTTGTCAGGGTGGAATTGAACCTTATTCAAGTTTGGGCATTGATTGAACAATTTGTATCATTGGTATGCTCGTTCCAGCTTATGACACTGTGGTAACAAGCGGCAGAATTGTAAAGTCCATTCATAGTGAAAGCTTTTGTTTAAGTACGCCTTATAGAGGGCTGTCTCAGGAGATTTTTGTACGTACAAGATACATTTTATAGGGTATTGCAAATCCACACTGGAAGTAGCGTGGCGTCTCACTTTTTCCTTTACTACAGATTTAAGTCAAAATGGTGAATTTTACCACATGAATGGTATTGAATTGTGTGGCTATGTTCTCAGACATTTAATTCCTTGTCCTTGTGTATTCATAGCAAACAGTTTATTCAAAATTAAACCTGCTCAAGCATATATATGTTTTGCATACTTTGAAGTTTTGAATTATTTATTTATTTAAATGCA

>Glyma03g24280.3   sequence type=transcript   gene model=Glyma03g24280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGAAACCCAATCTGAAATTGAGCATCGAGTCCAAAGGTTTCGAAACGCAATGTCCACTCTGCTTCACTCCGCTCCCACTTCTTCTCCTTCCTTCTCTCGGATCATCACTCCTCGTTTCGCTTTCGCTCCAATCACTCGCATCTCTCTCCGAAACGGCGTCCGTAGCAAGGCGATCGAAGCAGTGAAGTTGGAGAATGGAAGGCCGAGCGCGAGCGAGTTCGTAGTCAGCGGAAGCGGAAACGCAATTCCGAGTTACGTCGTGGCGCCAAACGCGCGTGTTCAGGATTTGGTTAACCGAAACGACACTCGCCTCCGGATATTCTCCGGCACTGCCAATCCGGCTCTTGCTCAGGAAATTGCATGCTACCTGGGCCTGGAGCTAGGAAAAATTAAGATAAAGCGTTTTGCTGATGGTGAGATATATGTCCAGCTGCAAGAGAGTGTCAGGGGGTGTGATGTGTTTCTTGTGCAGCCCACATGTCCTCCTGCAAATGAGAATCTTATGGAGCTTCTCATAATGATTGATGCCTGCAGGAGGGCTTCAGCCAAAAATATTACTGCTGTCATTCCATATTTTGGATATGCCAGAGCTGATAGAAAGACCCAAGGACGTGAATCCATTGCTGCCAAGCTTGTAGCAAATTTAATTACAGAAGCAGGTGCAAATCGTGTACTTGCTTGTGACCTCCATTCTGGGCAGTCCATGGGCTATTTTGATATTCCAGTTGATCATGTGTATGGCCAGCCTGTTATACTTGATTACCTTGCCAGCAAGACTATTTGTTCAGATGATTTGGTAGTTGTCTCGCCAGATGTTGGTGGTGTTGCCAGAGCACGTGCTTTTGCCAAAAAATTATCTGATGCTCCTTTAGCTATTGTTGATAAAAGGCGCCATGGGCATAATGTTGCTGAGGTGATGAATTTGATTGGTGATGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTGGGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAGTCTATGCATGCACTACACATGCTGTTTTCAGTCCTCCTGCTATTGAGAGGTTGTCAAGTGGTTTGTTCCAAGAAGTTATCATAACTAATACAATTCCAGTGGCAGAACAGAACTATTTCCCTCAATTAACTGTCTTGTCGGTGGCAAACCTTCTGGGCGAGACTGTTTGGCGTGTTCATGATGATTGCTCACTTATGACACTGTGGTAACAAGCGGCAGAATTGTAAAGTCCATTCATAGTGAAAGCTTTTGTTTAAGTACGCCTTATAGAGGGCTGTCTCAGGAGATTTTTGTACGTACAAGATACATTTTATAGGGTATTGCAAATCCACACTGGAAGTAGCGTGGCGTCTCACTTTTTCCTTTACTACAGATTTAAGTCAAAATGGTGAATTTTACCACATGAATGGTATTGAATTGTGTGGCTATGTTCTCAGACATTTAATTCCTTGTCCTTGTGTATTCATAGCAAACAGTTTATTCAAAATTAAACCTGCTCAAGCATATATATGTTTTGCATACTTTGAAGTTTTGAATTATTTATTTATTTAAATGCA

Coding sequences of Glyma03g24280

Limit To All Plant Sequences

>Glyma03g24280.1   sequence type=CDS   gene model=Glyma03g24280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCACTCTGCTTCACTCCGCTCCCACTTCTTCTCCTTCCTTCTCTCGGATCATCACTCCTCGTTTCGCTTTCGCTCCAATCACTCGCATCTCTCTCCGAAACGGCGTCCGTAGCAAGGCGATCGAAGCAGTGAAGTTGGAGAATGGAAGGCCGAGCGCGAGCGAGTTCGTAGTCAGCGGAAGCGGAAACGCAATTCCGAGTTACGTCGTGGCGCCAAACGCGCGTGTTCAGGATTTGGTTAACCGAAACGACACTCGCCTCCGGATATTCTCCGGCACTGCCAATCCGGCTCTTGCTCAGGAAATTGCATGCTACCTGGGCCTGGAGCTAGGAAAAATTAAGATAAAGCGTTTTGCTGATGGTGAGATATATGTCCAGCTGCAAGAGAGTGTCAGGGGGTGTGATGTGTTTCTTGTGCAGCCCACATGTCCTCCTGCAAATGAGAATCTTATGGAGCTTCTCATAATGATTGATGCCTGCAGGAGGGCTTCAGCCAAAAATATTACTGCTGTCATTCCATATTTTGGATATGCCAGAGCTGATAGAAAGACCCAAGGACGTGAATCCATTGCTGCCAAGCTTGTAGCAAATTTAATTACAGAAGCAGGTGCAAATCGTGTACTTGCTTGTGACCTCCATTCTGGGCAGTCCATGGGCTATTTTGATATTCCAGTTGATCATGTGTATGGCCAGCCTGTTATACTTGATTACCTTGCCAGCAAGACTATTTGTTCAGATGATTTGGTAGTTGTCTCGCCAGATGTTGGTGGTGTTGCCAGAGCACGTGCTTTTGCCAAAAAATTATCTGATGCTCCTTTAGCTATTGTTGATAAAAGGCGCCATGGGCATAATGTTGCTGAGGTGATGAATTTGATTGGTGATGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTGGGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAGTCTATGCATGCACTACACATGCTGTTTTCAGTCCTCCTGCTATTGAGAGGTTGTCAAGTGGTTTGTTCCAAGAAGTTATCATAACTAATACAATTCCAGTGGCAGAACAGAACTATTTCCCTCAATTAACTGTCTTGTCGGTGGCAAACCTTCTGGGCGAGACTGTTTGGCGTGTTCATGATGATTGCTCAGGTGGAATTGAACCTTATTCAAGTTTGGGCATTGATTGA

>Glyma03g24280.2   sequence type=CDS   gene model=Glyma03g24280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCACTCTGCTTCACTCCGCTCCCACTTCTTCTCCTTCCTTCTCTCGGATCATCACTCCTCGTTTCGCTTTCGCTCCAATCACTCGCATCTCTCTCCGAAACGGCGTCCGTAGCAAGGCGATCGAAGCAGTGAAGTTGGAGAATGGAAGGCCGAGCGCGAGCGAGTTCGTAGTCAGCGGAAGCGGAAACGCAATTCCGAGTTACGTCGTGGCGCCAAACGCGCGTGTTCAGGATTTGGTTAACCGAAACGACACTCGCCTCCGGATATTCTCCGGCACTGCCAATCCGGCTCTTGCTCAGGAAATTGCATGCTACCTGGGCCTGGAGCTAGGAAAAATTAAGATAAAGCGTTTTGCTGATGGTGAGATATATGTCCAGCTGCAAGAGAGTGTCAGGGGGTGTGATGTGTTTCTTGTGCAGCCCACATGTCCTCCTGCAAATGAGAATCTTATGGAGCTTCTCATAATGATTGATGCCTGCAGGAGGGCTTCAGCCAAAAATATTACTGCTGTCATTCCATATTTTGGATATGCCAGAGCTGATAGAAAGACCCAAGGACGTGAATCCATTGCTGCCAAGCTTGTAGCAAATTTAATTACAGAAGCAGGTGCAAATCGTGTACTTGCTTGTGACCTCCATTCTGGGCAGTCCATGGGCTATTTTGATATTCCAGTTGATCATGTGTATGGCCAGCCTGTTATACTTGATTACCTTGCCAGCAAGACTATTTGTTCAGATGATTTGGTAGTTGTCTCGCCAGATGTTGGTGGTGTTGCCAGAGCACGTGCTTTTGCCAAAAAATTATCTGATGCTCCTTTAGCTATTGTTGATAAAAGGCGCCATGGGCATAATGTTGCTGAGGTGATGAATTTGATTGGTGATGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTGGGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAGTCTATGCATGCACTACACATGCTGTTTTCAGTCCTCCTGCTATTGAGAGGTTGTCAAGTGGTTTGTTCCAAGAAGTTATCATAACTAATACAATTCCAGTGGCAGAACAGAACTATTTCCCTCAATTAACTGTCTTGTCGGTGGCAAACCTTCTGGGCGAGACTGTTTGGCGTGTTCATGATGATTGCTCAGTGAGTAGCATATTTCTGTAG

>Glyma03g24280.3   sequence type=CDS   gene model=Glyma03g24280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCACTCTGCTTCACTCCGCTCCCACTTCTTCTCCTTCCTTCTCTCGGATCATCACTCCTCGTTTCGCTTTCGCTCCAATCACTCGCATCTCTCTCCGAAACGGCGTCCGTAGCAAGGCGATCGAAGCAGTGAAGTTGGAGAATGGAAGGCCGAGCGCGAGCGAGTTCGTAGTCAGCGGAAGCGGAAACGCAATTCCGAGTTACGTCGTGGCGCCAAACGCGCGTGTTCAGGATTTGGTTAACCGAAACGACACTCGCCTCCGGATATTCTCCGGCACTGCCAATCCGGCTCTTGCTCAGGAAATTGCATGCTACCTGGGCCTGGAGCTAGGAAAAATTAAGATAAAGCGTTTTGCTGATGGTGAGATATATGTCCAGCTGCAAGAGAGTGTCAGGGGGTGTGATGTGTTTCTTGTGCAGCCCACATGTCCTCCTGCAAATGAGAATCTTATGGAGCTTCTCATAATGATTGATGCCTGCAGGAGGGCTTCAGCCAAAAATATTACTGCTGTCATTCCATATTTTGGATATGCCAGAGCTGATAGAAAGACCCAAGGACGTGAATCCATTGCTGCCAAGCTTGTAGCAAATTTAATTACAGAAGCAGGTGCAAATCGTGTACTTGCTTGTGACCTCCATTCTGGGCAGTCCATGGGCTATTTTGATATTCCAGTTGATCATGTGTATGGCCAGCCTGTTATACTTGATTACCTTGCCAGCAAGACTATTTGTTCAGATGATTTGGTAGTTGTCTCGCCAGATGTTGGTGGTGTTGCCAGAGCACGTGCTTTTGCCAAAAAATTATCTGATGCTCCTTTAGCTATTGTTGATAAAAGGCGCCATGGGCATAATGTTGCTGAGGTGATGAATTTGATTGGTGATGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTGGGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAGTCTATGCATGCACTACACATGCTGTTTTCAGTCCTCCTGCTATTGAGAGGTTGTCAAGTGGTTTGTTCCAAGAAGTTATCATAACTAATACAATTCCAGTGGCAGAACAGAACTATTTCCCTCAATTAACTGTCTTGTCGGTGGCAAACCTTCTGGGCGAGACTGTTTGGCGTGTTCATGATGATTGCTCACTTATGACACTGTGGTAA

Predicted protein sequences of Glyma03g24280

Limit To All Plant Sequences

>Glyma03g24280.1   sequence type=predicted peptide   gene model=Glyma03g24280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTLLHSAPTSSPSFSRIITPRFAFAPITRISLRNGVRSKAIEAVKLENGRPSASEFVVSGSGNAIPSYVVAPNARVQDLVNRNDTRLRIFSGTANPALAQEIACYLGLELGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTICSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVRGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACTTHAVFSPPAIERLSSGLFQEVIITNTIPVAEQNYFPQLTVLSVANLLGETVWRVHDDCSGGIEPYSSLGID*

>Glyma03g24280.2   sequence type=predicted peptide   gene model=Glyma03g24280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTLLHSAPTSSPSFSRIITPRFAFAPITRISLRNGVRSKAIEAVKLENGRPSASEFVVSGSGNAIPSYVVAPNARVQDLVNRNDTRLRIFSGTANPALAQEIACYLGLELGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTICSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVRGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACTTHAVFSPPAIERLSSGLFQEVIITNTIPVAEQNYFPQLTVLSVANLLGETVWRVHDDCSVSSIFL*

>Glyma03g24280.3   sequence type=predicted peptide   gene model=Glyma03g24280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTLLHSAPTSSPSFSRIITPRFAFAPITRISLRNGVRSKAIEAVKLENGRPSASEFVVSGSGNAIPSYVVAPNARVQDLVNRNDTRLRIFSGTANPALAQEIACYLGLELGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTICSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVRGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACTTHAVFSPPAIERLSSGLFQEVIITNTIPVAEQNYFPQLTVLSVANLLGETVWRVHDDCSLMTLW*

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