Glyma03g24270 - SoyBase

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Report for Sequence Feature Glyma03g24270

Feature Type:	gene_model
Chromosome:	Gm03
Start:	30986797
stop:	30991067
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g24270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44525	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF498/DUF598) \| chr2:18382130-18383320 FORWARD LENGTH=170	SoyBase	E_val: 2.00E-90	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3363	KOG	Uncharacterized conserved nuclear protein	JGI		ISS
PTHR21192	Panther	NUCLEAR PROTEIN E3-3	JGI		ISS
PF04430	PFAM	Protein of unknown function (DUF498/DUF598)	JGI		ISS
UniRef100_C6TNT9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TNT9_SOYBN	SoyBase	E_val: 2.00E-124	ISS
UniRef100_J3N534	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pyruvate kinase n=1 Tax=Oryza brachyantha RepID=J3N534_ORYBR	SoyBase	E_val: 7.00E-55	ISS

Expression Patterns of Glyma03g24270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g24270 not represented in the dataset	Glyma03g24270 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g24270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g100700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g24270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g24270

Limit To All Plant Sequences

>Glyma03g24270.2   sequence type=transcript   gene model=Glyma03g24270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAACATATGCATTGTTGAGTTGGGGGGAATAGGAGGGGGCAAATTGAGTTGGGTGTTGGAAAGGCAGAGCAAGAGGAGTAACATAATCAAACATGGCGGTTAGGCAAAGAGCCGTGTCTGCACTTCCAACTCTTCTACGCACTCTCCGCAAAGAACCTTTGAAGCCTCGCAACCACGCACACGTCAATGCCTTGCCCTCTCTTCGACGCGCTTTCTCTTTGTACGATCAGATCAACCTCATCGATCAAGTCCCCGAAGACCAGCTCCGATTTCAAGGGTATAATGATACGGGGTTTACTGTAAATGGGGTTGAATACGAAGGAAGCTTGCTTTGTGTTGGAAATTTGCTCATGTCTTGGAAACCTAAGAAGTTTTCAGAGATCACTGCCGATAGGTTTGTTTGTTCTATTCCCCTTGTTTCTTCTCCCTATTCATTGTTAGTAACATTTTTATTTAAATAAGCACTTTTTGCATTGTCCTGATCCTTACAACTTCTCAATTCCTTTCACGAATGAAACTGTGGTAATTTTGTCTTTTTGGTGTATTTAGTGTTTGTCCTGAAACTGATTCTTTATATCTAAAGTTGAAGGAGTGCAGTGGTAACTGTGCTGCCTTAGTAATCCAAGTTCAAAGTTTCGAATTTACTTTTGAAGCTTG

>Glyma03g24270.3   sequence type=transcript   gene model=Glyma03g24270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAACATATGCATTGTTGAGTTGGGGGGAATAGGAGGGGGCAAATTGAGTTGGGTGTTGGAAAGGCAGAGCAAGAGGAGTAACATAATCAAACATGGCGGTTAGGCAAAGAGCCGTGTCTGCACTTCCAACTCTTCTACGCACTCTCCGCAAAGAACCTTTGAAGCCTCGCAACCACGCACACGTCAATGCCTTGCCCTCTCTTCGACGCGCTTTCTCTTTGTACGATCAGATCAACCTCATCGATCAAGTCCCCGAAGACCAGCTCCGATTTCAAGGGTATAATGATACGGGGTTTACTGTAAATGGGGTTGAATACGAAGGAAGCTTGCTTTGTGTTGGAAATTTGCTCATGTCTTGGAAACCTAAGAAGTTTTCAGAGATCACTGCCGATAGCTTGTCAATCTTCCAAATAGTTCGCCCTATTCCAGATTTTGATTATTGGCTGTGGAAAGAACATTCAACATGTAGATCCTGAACTTAGACGGTTTATTCGGTCTACTGGCATTAAGCTAGAAGCTGTTGATTCGAGAAACGCAGCATCAACTTACAACATACTGAATGAAGAAGGTCGAATTGTGGCTGCTGCACTTCTTCCACACGGAGTTTCTTCATGAAGCTTGGACTTGTATTCTTAGTAGCCAACAATTGCTCCAAAGATGTTCACCTCAATGCCACAAAATTTTTTAGCCCAAGTCCTTGGGACATGCTTTGATTTTCCATTTAGAAAGTTTTGACATAGTAATAGGACAATGTGAATTAAACTCAAGTGAGTCCTTTGACGTCTGCTGAAGTTTTCAAATGTAATAAGGAGAATTAAAATGTACAGAGTGCAGTAAATCCCTGCAAATTTGGACTCTAATGACTGGCTGTTTGGTTTTAATGCTATCTTACTTTGTTAGAGTTGAAAAGAAAACTGTATAATTTTACTATTCTTCAATCAACCCTTTATTTGGATGAGAAAAAAAGGAAATGGAGAAGAGAGAAAATATGAACAATGTGTTTTTTTTTGTTGAAGAGAAA

Coding sequences of Glyma03g24270

Limit To All Plant Sequences

>Glyma03g24270.1   sequence type=CDS   gene model=Glyma03g24270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTTAGGCAAAGAGCCGTGTCTGCACTTCCAACTCTTCTACGCACTCTCCGCAAAGAACCTTTGAAGCCTCGCAACCACGCACACGTCAATGCCTTGCCCTCTCTTCGACGCGCTTTCTCTTTGTACGATCAGATCAACCTCATCGATCAAGTCCCCGAAGACCAGCTCCGATTTCAAGGGTATAATGATACGGGGTTTACTGTAAATGGGGTTGAATACGAAGGAAGCTTGCTTTGTGTTGGAAATTTGCTCATGTCTTGGAAACCTAAGAAGTTTTCAGAGATCACTGCCGATAGCTTGTCAATCTTCCAAATAGTTCGCCCTATTCCAGAGATTTTGATTATTGGCTGTGGAAAGAACATTCAACATGTAGATCCTGAACTTAGACGGTTTATTCGGTCTACTGGCATTAAGCTAGAAGCTGTTGATTCGAGAAACGCAGCATCAACTTACAACATACTGAATGAAGAAGGTCGAATTGTGGCTGCTGCACTTCTTCCACACGGAGTTTCTTCATGA

>Glyma03g24270.2   sequence type=CDS   gene model=Glyma03g24270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTTAGGCAAAGAGCCGTGTCTGCACTTCCAACTCTTCTACGCACTCTCCGCAAAGAACCTTTGAAGCCTCGCAACCACGCACACGTCAATGCCTTGCCCTCTCTTCGACGCGCTTTCTCTTTGTACGATCAGATCAACCTCATCGATCAAGTCCCCGAAGACCAGCTCCGATTTCAAGGGTATAATGATACGGGGTTTACTGTAAATGGGGTTGAATACGAAGGAAGCTTGCTTTGTGTTGGAAATTTGCTCATGTCTTGGAAACCTAAGAAGTTTTCAGAGATCACTGCCGATAGGTTTGTTTGTTCTATTCCCCTTGTTTCTTCTCCCTATTCATTGTTAGTAACATTTTTATTTAAATAA

>Glyma03g24270.3   sequence type=CDS   gene model=Glyma03g24270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTTAGGCAAAGAGCCGTGTCTGCACTTCCAACTCTTCTACGCACTCTCCGCAAAGAACCTTTGAAGCCTCGCAACCACGCACACGTCAATGCCTTGCCCTCTCTTCGACGCGCTTTCTCTTTGTACGATCAGATCAACCTCATCGATCAAGTCCCCGAAGACCAGCTCCGATTTCAAGGGTATAATGATACGGGGTTTACTGTAAATGGGGTTGAATACGAAGGAAGCTTGCTTTGTGTTGGAAATTTGCTCATGTCTTGGAAACCTAAGAAGTTTTCAGAGATCACTGCCGATAGCTTGTCAATCTTCCAAATAGTTCGCCCTATTCCAGATTTTGATTATTGGCTGTGGAAAGAACATTCAACATGTAGATCCTGA

Predicted protein sequences of Glyma03g24270

Limit To All Plant Sequences

>Glyma03g24270.1   sequence type=predicted peptide   gene model=Glyma03g24270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVRQRAVSALPTLLRTLRKEPLKPRNHAHVNALPSLRRAFSLYDQINLIDQVPEDQLRFQGYNDTGFTVNGVEYEGSLLCVGNLLMSWKPKKFSEITADSLSIFQIVRPIPEILIIGCGKNIQHVDPELRRFIRSTGIKLEAVDSRNAASTYNILNEEGRIVAAALLPHGVSS*

>Glyma03g24270.2   sequence type=predicted peptide   gene model=Glyma03g24270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVRQRAVSALPTLLRTLRKEPLKPRNHAHVNALPSLRRAFSLYDQINLIDQVPEDQLRFQGYNDTGFTVNGVEYEGSLLCVGNLLMSWKPKKFSEITADRFVCSIPLVSSPYSLLVTFLFK*

>Glyma03g24270.3   sequence type=predicted peptide   gene model=Glyma03g24270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVRQRAVSALPTLLRTLRKEPLKPRNHAHVNALPSLRRAFSLYDQINLIDQVPEDQLRFQGYNDTGFTVNGVEYEGSLLCVGNLLMSWKPKKFSEITADSLSIFQIVRPIPDFDYWLWKEHSTCRS*

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