Glyma03g24250 - SoyBase

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Report for Sequence Feature Glyma03g24250

Feature Type:	gene_model
Chromosome:	Gm03
Start:	30965764
stop:	30978102
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g24250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_D4P3K4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycine and proline rich protein 4 n=1 Tax=Glycine max RepID=D4P3K4_SOYBN	SoyBase	E_val: 8.00E-10	ISS
UniRef100_I1JMG8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JMG8_SOYBN	SoyBase	E_val: 4.00E-61	ISS

Expression Patterns of Glyma03g24250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g24250 not represented in the dataset	Glyma03g24250 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g24250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g100500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g24250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g24250

Limit To All Plant Sequences

>Glyma03g24250.3   sequence type=transcript   gene model=Glyma03g24250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTATTATTCTTTTAGCAACAAGCATTTTCTTTCATCACCTTTGGAAGATTTTGGAGAAAGCATTTACAATTTCCATTTGCGTTGAACCAACATGAGCAACAGAAAAGACAAGAATGATGATGAGTCTAGTGAGAGAGGTATATTTTCACATCTAGGATATCCAAGTGCACCACCCCCCTACCCTCCTCCACATGGATACCCACCATCAGGCTATCCACCTCCAGGAGGGTATCCCCCAACAGCCTATCCGCCGCTGGGAGGATATCCACATTCCGGTTACTATCCTTCAGAATATCCACCAGCATATCCGCCTCCGGGAGGGTATCCACCCACTGCTTATCCTCATTCAGGATATCATCCACCAGCTTATCCTGCCCCACATGGCTATCCACCTGCTGCACCTCCATATCCTGGAGTGACACCATATGGCTCATGGATATCATCGTTTTGGACACGGAGCCTACTATGGTCATGGAAAGTTCAAGCATGGGAAATATGGCAAGCGTTGGAAGCATGGCAGGTTTGGATTTGGCAAGCATAAGCATGGTTGGAAAAGGTGGAAGTGATAAAGTGTTAAATATGTAATTGGAAAAGGTGGAAGTGATAAAGTGTTAAATATGTAATTTTGAGCAAGGTCATGGAGGTTTTAGTTATGGGATGAATAATGTATGCTACAACAACATATTGCATGTTTGTAATGACTACTTTATTTATGACTTACTATCATTTTACATAAA

>Glyma03g24250.4   sequence type=transcript   gene model=Glyma03g24250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGGAAGAGAAAAATATGATATTTTTATGTTTTGTAATAAAAGATGTATATATGCCATGCTATTACGTGCAGTTCATAGCAGTCTTCAACAAAAAGCAAACGCGTCATAGCTTCGTGTGCTTTTTAAAATCAAGAGAAACGATAAGTATAAGAATAGGTAAAGTTTCAATTTATGCATTTTTATTATTCTTTTAGCAACAAGCATTTTCTTTCATCACCTTTGGAAGATTTTGGAGAAAGCATTTACAATTTCCATTTGCGTTGAACCAACATGAGCAACAGAAAAGACAAGAATGATGATGAGTCTAGTGAGAGAGGTATATTTTCACATCTAGGATATCCAAGTGCACCACCCCCCTACCCTCCTCCACATGGATACCCACCATCAGGCTATCCACCTCCAGGAGGGTATCCCCCAACAGCCTATCCGCCGCTGGGAGGATATCCACATTCCGGTTACTATCCTTCAGAATATCCACCAGCATATCCGCCTCCGGGAGGGTATCCACCCACTGCTTATCCTCATTCAGGATATCATCCACCAGCTTATCCTGCCCCACATGGCTATCCACCTGCTGCACCTCCATATCCTGGAGGTGTGGGGCTGGCATGGGAAGATTAATTCAAACTACCGCTACCTATGGGTGCTCACCTATGAAGCAC

>Glyma03g24250.5   sequence type=transcript   gene model=Glyma03g24250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGGAAGAGAAAAATATGATATTTTTATGTTTTGTAATAAAAGATGTATATATGCCATGCTATTACGTGCAGTTCATAGCAGTCTTCAACAAAAAGCAAACGCGTCATAGCTTCGTGTGCTTTTTAAAATCAAGAGAAACGATAAGTATAAGAATAGGTAAAGTTTCAATTTATGCATTTTTATTATTCTTTTAGCAACAAGCATTTTCTTTCATCACCTTTGGAAGATTTTGGAGAAAGCATTTACAATTTCCATTTGCGTTGAACCAACATGAGCAACAGAAAAGACAAGAATGATGATGAGTCTAGTGAGAGAGGTATATTTTCACATCTAGGATATCCAAGTGCACCACCCCCCTACCCTCCTCCACATGGATACCCACCATCAGGCTATCCACCTCCAGGAGGGTATCCCCCAACAGCCTATCCGCCGCTGGGAGGATATCCACATTCCGGTTACTATCCTTCAGAATATCCACCAGCATATCCGCCTCCGGGAGGGTATCCACCCACTGCTTATCCTCATTCAGGATATCATCCACCAGCTTATCCTGCCCCACATGGCTATCCACCTGCTGCACCTCCATATCCTGGAGGTACAATACTAATTTGTTATGCTTGAAATTGAATTACCACCACCCAATTATCCTCCTTTGTCATGTAACACCAATTTATTGTTGTTGGTGATGGTGTTGACATGACAATAAATCATTTCAAATTTCAATCAACAATCAGAAAATACTCAAAACATTAACTTTCACACCATTACACACTTACAGCAAATACAAGGTACAAACTAACTGAATTGGTAGGGGCTGAATTTGAGCAAAATACAAGGTTCAAAACAAAATTGAATAATTAAAATGTTATAACTGAATTGGTAGGGGCCGCGCGAACACAGGCTCCCTCTGCCACAAATTATGACATAGGCTCTGTCTCTTGAACAGACCTTAGTACAGCACCCCTCCTAAGTGCAATGGAGGTCACTATTCTAGGCCATAGGCCTTCATGGTTACCCATTGACCCCATCCAGGTAAGTATGTTGTTCAATCCCATACACATTTCTTTTATAACTCGAGCTTACTTCGCCTAAACTTCCCAATGTGGGGCTTTTCACACCCCTATCTATGCAACTGCAAGCGCTTTAAAAGAAATGTCTCTCCAGCTAGGTTTGAGAAAATACCTCTCAGTCCTTCTGACTTCTAACAACAAAATACAACAGTGACACCATATGGCTCATGGATATCATCGTTTTGGACACGGAGCCTACTATGGTCATGGAAAGTTCAAGCATGGGAAATATGGCAAGCGTTGGAAGCATGGCAGGTTTGGATTTGGCAAGCATAAGCATGGTTGGAAAAGGTGGAAGTGATAAAGTGTTAAATATGTAATTGGAAAAGGTGGAAGTGATAAAGTGTTAAATATGTAATTTTGAGCAAGGTCATGGAGGTTTTAGTTATGGGATGAATAATGTATGCTACAACAACATATTGCATGTTTGTAATGACTACTTTATTTATGACTTACTATCATTTTACATAAAAGAAATTTGTAAGGAAATTTTTTTTTTCAAAGTTCAAAACTACAATAGCAGGGCATTACCCCAAAGGGAGCCCTTCCAGAAATTCTCAAAGGCCTGAGCCAAACCCAGGCCTAAGAGGGGGTTTGGAAATAGTTTTCAACCAGCAATAGACGCGCCTCAGTTAGAACCTCACTAGCTGCGTCATTGCCCCAAGCGCAAAGATAACTCAAGCTATCTGATGTGTACTTTTATATAGGACAACTTCTAAGTCTATTGAAGCATACGCTCCGGATGTGGGACTAAAGTTTGTGTTTTTATTTGCCATTTACCTTGTCCTTCTTGTGTGATCATAATCAAAATCATTATTGAAACAAACAGCAGTTTCTGGATTCCAACAATGTGATCCTACCAAAATCTGAAACTTCAAAGTGCTCTCTTTCTTTTTAGAGAGCATCGTCGAGATCATGCTGGAAATATTTGGTTGCCACATCTTCCTTCTGGACACTTTATCAAAAAGCTTATACTACCTCAGTCATTCCATTGTTTTGCTTGACATGACCTTATACTTTTGCATCAGAGTTGTTGCTTTGTTGAATCCTCGTGAGTATATATGGTTGAAGTAAGAAAAATAGTGACTGGTTTCAAGAGCACGAAAGAGAACTGAGAACACTGAGCATCTGAACAGAAGATTGACTTCATATGCTTTCCATTTTGTTAATTGGCTCTTGGAAGACTAAGAGAGGAAAAGCCAACGGGGAAAGCATGAAGGCTTTGGAAGCAGCGTGGTGGAACGGAACCACATGCCCTTTGGCAGGATTGAGGGGTATGCCTCTTTGTGCAGATACATAAAGACTTAGCACAACAACCTGTTATCTGTTAGAGAGGAGTTTAAG

>Glyma03g24250.6   sequence type=transcript   gene model=Glyma03g24250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCAGTCTTCAACAAAAAGCAAACGCGTCATAGCTTCGTGTGCTTTTTAAAATCAAGAGAAACGATAAGTATAAGAATAGGTTGAACCAACATGAGCAACAGAAAAGACAAGAATGATGATGAGTCTAGTGAGAGAGGTATATTTTCACATCTAGGATATCCAAGTGCACCACCCCCCTACCCTCCTCCACATGGATACCCACCATCAGGCTATCCACCTCCAGGAGGGTATCCCCCAACAGCCTATCCGCCGCTGGGAGGATATCCACATTCCGGTTACTATCCTTCAGAATATCCACCAGCATATCCGCCTCCGGGAGGGTATCCACCCACTGCTTATCCTCATTCAGGATATCATCCACCAGCTTATCCTGCCCCACATGGCTATCCACCTGCTGCACCTCCATATCCTGGAGGTACAATACTAATTTGTTATGCTTGAAATTGAATTACCACCACCCAATTATCCTCCTTTGTCATGTAACACCAATTTATTGTTGTTGGTGATGGTGTTGACATGACAATAAATCATTTCAAATTTCAATCAACAATCAGAAAATACTCAAAACATTAACTTTCACACCATTACACACTTACAGCAAATACAAGGTACAAACTAACTGAATTGGTAGGGG

Coding sequences of Glyma03g24250

Limit To All Plant Sequences

>Glyma03g24250.2   sequence type=CDS   gene model=Glyma03g24250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAACAGAAAAGACAAGAATGATGATGAGTCTAGTGAGAGAGGTATATTTTCACATCTAGGATATCCAAGTGCACCACCCCCCTACCCTCCTCCACATGGATACCCACCATCAGGCTATCCACCTCCAGGAGGGTATCCCCCAACAGCCTATCCGCCGCTGGGAGGATATCCACATTCCGGTTACTATCCTTCAGAATATCCACCAGCATATCCGCCTCCGGGAGGGTATCCACCCACTGCTTATCCTCATTCAGGATATCATCCACCAGCTTATCCTGCCCCACATGGCTATCCACCTGCTGCACCTCCATATCCTGGAGTGACACCATATGGCTCATGGATATCATCGTTTTGGACACGGAGCCTACTATGGTCATGGAAAGTTCAAGCATGGGAAATATGGCAAGCGTTGGAAGCATGGCAGGTTTGGATTTGGCAAGCATAA

>Glyma03g24250.3   sequence type=CDS   gene model=Glyma03g24250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAACAGAAAAGACAAGAATGATGATGAGTCTAGTGAGAGAGGTATATTTTCACATCTAGGATATCCAAGTGCACCACCCCCCTACCCTCCTCCACATGGATACCCACCATCAGGCTATCCACCTCCAGGAGGGTATCCCCCAACAGCCTATCCGCCGCTGGGAGGATATCCACATTCCGGTTACTATCCTTCAGAATATCCACCAGCATATCCGCCTCCGGGAGGGTATCCACCCACTGCTTATCCTCATTCAGGATATCATCCACCAGCTTATCCTGCCCCACATGGCTATCCACCTGCTGCACCTCCATATCCTGGAGTGACACCATATGGCTCATGGATATCATCGTTTTGGACACGGAGCCTACTATGGTCATGGAAAGTTCAAGCATGGGAAATATGGCAAGCGTTGGAAGCATGGCAGGTTTGGATTTGGCAAGCATAA

>Glyma03g24250.4   sequence type=CDS   gene model=Glyma03g24250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAACAGAAAAGACAAGAATGATGATGAGTCTAGTGAGAGAGGTATATTTTCACATCTAGGATATCCAAGTGCACCACCCCCCTACCCTCCTCCACATGGATACCCACCATCAGGCTATCCACCTCCAGGAGGGTATCCCCCAACAGCCTATCCGCCGCTGGGAGGATATCCACATTCCGGTTACTATCCTTCAGAATATCCACCAGCATATCCGCCTCCGGGAGGGTATCCACCCACTGCTTATCCTCATTCAGGATATCATCCACCAGCTTATCCTGCCCCACATGGCTATCCACCTGCTGCACCTCCATATCCTGGAGGTGTGGGGCTGGCATGGGAAGATTAA

>Glyma03g24250.5   sequence type=CDS   gene model=Glyma03g24250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAACAGAAAAGACAAGAATGATGATGAGTCTAGTGAGAGAGGTATATTTTCACATCTAGGATATCCAAGTGCACCACCCCCCTACCCTCCTCCACATGGATACCCACCATCAGGCTATCCACCTCCAGGAGGGTATCCCCCAACAGCCTATCCGCCGCTGGGAGGATATCCACATTCCGGTTACTATCCTTCAGAATATCCACCAGCATATCCGCCTCCGGGAGGGTATCCACCCACTGCTTATCCTCATTCAGGATATCATCCACCAGCTTATCCTGCCCCACATGGCTATCCACCTGCTGCACCTCCATATCCTGGAGGTACAATACTAATTTGTTATGCTTGA

>Glyma03g24250.6   sequence type=CDS   gene model=Glyma03g24250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAACAGAAAAGACAAGAATGATGATGAGTCTAGTGAGAGAGGTATATTTTCACATCTAGGATATCCAAGTGCACCACCCCCCTACCCTCCTCCACATGGATACCCACCATCAGGCTATCCACCTCCAGGAGGGTATCCCCCAACAGCCTATCCGCCGCTGGGAGGATATCCACATTCCGGTTACTATCCTTCAGAATATCCACCAGCATATCCGCCTCCGGGAGGGTATCCACCCACTGCTTATCCTCATTCAGGATATCATCCACCAGCTTATCCTGCCCCACATGGCTATCCACCTGCTGCACCTCCATATCCTGGAGGTACAATACTAATTTGTTATGCTTGA

Predicted protein sequences of Glyma03g24250

Limit To All Plant Sequences

>Glyma03g24250.2   sequence type=predicted peptide   gene model=Glyma03g24250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNRKDKNDDESSERGIFSHLGYPSAPPPYPPPHGYPPSGYPPPGGYPPTAYPPLGGYPHSGYYPSEYPPAYPPPGGYPPTAYPHSGYHPPAYPAPHGYPPAAPPYPGVTPYGSWISSFWTRSLLWSWKVQAWEIWQALEAWQVWIWQA*

>Glyma03g24250.3   sequence type=predicted peptide   gene model=Glyma03g24250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNRKDKNDDESSERGIFSHLGYPSAPPPYPPPHGYPPSGYPPPGGYPPTAYPPLGGYPHSGYYPSEYPPAYPPPGGYPPTAYPHSGYHPPAYPAPHGYPPAAPPYPGVTPYGSWISSFWTRSLLWSWKVQAWEIWQALEAWQVWIWQA*

>Glyma03g24250.4   sequence type=predicted peptide   gene model=Glyma03g24250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNRKDKNDDESSERGIFSHLGYPSAPPPYPPPHGYPPSGYPPPGGYPPTAYPPLGGYPHSGYYPSEYPPAYPPPGGYPPTAYPHSGYHPPAYPAPHGYPPAAPPYPGGVGLAWED*

>Glyma03g24250.5   sequence type=predicted peptide   gene model=Glyma03g24250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNRKDKNDDESSERGIFSHLGYPSAPPPYPPPHGYPPSGYPPPGGYPPTAYPPLGGYPHSGYYPSEYPPAYPPPGGYPPTAYPHSGYHPPAYPAPHGYPPAAPPYPGGTILICYA*

>Glyma03g24250.6   sequence type=predicted peptide   gene model=Glyma03g24250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNRKDKNDDESSERGIFSHLGYPSAPPPYPPPHGYPPSGYPPPGGYPPTAYPPLGGYPHSGYYPSEYPPAYPPPGGYPPTAYPHSGYHPPAYPAPHGYPPAAPPYPGGTILICYA*

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