SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G16970 | AT | Annotation by Michelle Graham. TAIR10: alkenal reductase | chr5:5576291-5578001 REVERSE LENGTH=345 | SoyBase | E_val: 3.00E-178 | ISS |
| GO:0006865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid transport | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
| GO:0010583 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone | SoyBase | N/A | ISS |
| GO:0015824 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proline transport | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016747 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups | SoyBase | N/A | ISS |
| GO:0032440 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 2-alkenal reductase [NAD(P)] activity | SoyBase | N/A | ISS |
| KOG1196 | KOG | Predicted NAD-dependent oxidoreductase | JGI | ISS | |
| PTHR11695 | Panther | ALCOHOL DEHYDROGENASE RELATED | JGI | ISS | |
| PTHR11695:SF5 | Panther | BENZYLALCOHOL DEHYDROGENASE | JGI | ISS | |
| PF00107 | PFAM | Zinc-binding dehydrogenase | JGI | ISS | |
| UniRef100_I1JMF4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JMF4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9SLN8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Allyl alcohol dehydrogenase n=1 Tax=Nicotiana tabacum RepID=Q9SLN8_TOBAC | SoyBase | E_val: 0 | ISS |
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Glyma03g24020 not represented in the dataset |
Glyma03g24020 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g098600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g24020.1 sequence type=CDS gene model=Glyma03g24020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGAAGTGAGGAACAAACAAGTGGTTCTGAGGGACTATGTGAGTGGTTTTCCTAAGGAATCCGACATGAACATAGTTGAAGGAACCACAATATTGAAGCTTCCACAAGGTTCCAATGATGTGCTTCTAAAAAATCTCTACCTTTCCTGTGACCCTTACATGAGAATGCTCATGACCAAGGTGGAAGGCCTCGACGTGTTTGGCACCTATACACCTGGCTCTCCATTAACAGGGTATGGAGTGTCCAAAGTCCTAGAATCTGGACACCCAGATTACAAGAAAGGTGATTTAGTGTGGGGATCTACAAAATGGGAAGAATTCAGCTTGGTGTCCCCAACTCAAATACTTTTCAAAATTGAGCAAACCGATGTTCCGCTTTCATATTATACTGGTATTCTTGGTATGCCGGGAATGACTGCATATGCAGGTTTCTTTGAAGTAGGCTCTCCCAAGAAAGGAGAGAATGTTTTTGTTTCAGCTGCCTCTGGTGCTGTTGGTCAACTTGTTGGCCAATTTGCTAAATTGACTGATTGTTATGTGGTTGGAAGTGCTGGAAGTAAAGAGAAGGTGGATCTTTTGAAGAATAAATTAGGATTTGATGAAGCCTTTAACTACAAAGAAGAGTCAGACCTCAATGCAACTTTGAAAAGATACTTTCCAGAAGGCATTGACATATACTTTGAGAATGTTGGGGGCAAGACACTTGATGCAGTACTCCCAAATATGAGAGTTCTTGGTCGCATACCTGTTTGTGGAATGGTCTCACAGTACAATCTGACACAACCTGAAGGTGTAACAAATTTGGCAAATCTTATATTTAAGCGGATTCGAATGCAAGGTTTTATTGTTGGTGAATTCTATCACCTATATCCAAAATTCTTGGAGTTTGTCCTGCCTCATATTAGAGAAAGGAAGGTTGTGTATGTGGAAGATATTGCTGAAGGTCTTGAGAATGGTCCTGCAGCCTTGGTTGGCCTCTATAGTGGTCGCAATGTTGGTAAACAAGTGGTTGTTGTTGCTCGTGACTGA
>Glyma03g24020.1 sequence type=predicted peptide gene model=Glyma03g24020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEVRNKQVVLRDYVSGFPKESDMNIVEGTTILKLPQGSNDVLLKNLYLSCDPYMRMLMTKVEGLDVFGTYTPGSPLTGYGVSKVLESGHPDYKKGDLVWGSTKWEEFSLVSPTQILFKIEQTDVPLSYYTGILGMPGMTAYAGFFEVGSPKKGENVFVSAASGAVGQLVGQFAKLTDCYVVGSAGSKEKVDLLKNKLGFDEAFNYKEESDLNATLKRYFPEGIDIYFENVGGKTLDAVLPNMRVLGRIPVCGMVSQYNLTQPEGVTNLANLIFKRIRMQGFIVGEFYHLYPKFLEFVLPHIRERKVVYVEDIAEGLENGPAALVGLYSGRNVGKQVVVVARD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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