Glyma03g23970 - SoyBase

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Report for Sequence Feature Glyma03g23970

Feature Type:	gene_model
Chromosome:	Gm03
Start:	30630832
stop:	30633704
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g23970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G64850	AT	Annotation by Michelle Graham. TAIR10: Calcium-binding EF hand family protein \| chr1:24096548-24097574 REVERSE LENGTH=162	SoyBase	E_val: 3.00E-62	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
PTHR11639	Panther	S100 CALCIUM-BINDING PROTEIN A	JGI		ISS
PTHR11639:SF43	Panther	CALCIUM-BINDING EF HAND FAMILY PROTEIN	JGI		ISS
UniRef100_D7KZ13	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding EF hand family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KZ13_ARALL	SoyBase	E_val: 2.00E-60	ISS
UniRef100_UPI00023374A5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023374A5 related cluster n=1 Tax=unknown RepID=UPI00023374A5	SoyBase	E_val: 4.00E-115	ISS

Expression Patterns of Glyma03g23970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g23970 not represented in the dataset	Glyma03g23970 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g23970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g098400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g23970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g23970

Limit To All Plant Sequences

>Glyma03g23970.2   sequence type=CDS   gene model=Glyma03g23970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGGTATCCTATCATGGATGGGACGATTCTTCATCAAGTTACAAGGTAAGGAGTGGAGGAAAAGGCAAATAAGAAAGATAACAGATCGAGTTTTTGACCGAGTAAAGAATCCAGCACAAAATAATTTGAGATTTGGAGATCTGTATATTGCTATTTTACTTGTGTACAATGATATCAACAAGTATATTCCCGGCCCCCATTTTGATCCTCCGTCAAAAGACAGAATAAAACAAGTCATCACGTTCTGTGATGACAACGAGGATGGCCAAATTAACCGTGACGAATTTTTTGGTTTCTTCGAGCAAATGGCACCCGAAACATTCAATGTTGTTCGAAGAAAACTTGTTGCCACTTTGGTTGCAACACCAACAGTTGCTGCAGTAACAAAGAAAGCTACTGAACGAGTCCCAGTTGTTGGGAAACTGGTGCAATGGTTACCCAAAGCAGTTTATGCTTTCCTTATGACAATTGCAGCTGTGTTGTACCAAGAGGATTCTGCACACTAG

Predicted protein sequences of Glyma03g23970

Limit To All Plant Sequences

>Glyma03g23970.2   sequence type=predicted peptide   gene model=Glyma03g23970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFGILSWMGRFFIKLQGKEWRKRQIRKITDRVFDRVKNPAQNNLRFGDLYIAILLVYNDINKYIPGPHFDPPSKDRIKQVITFCDDNEDGQINRDEFFGFFEQMAPETFNVVRRKLVATLVATPTVAAVTKKATERVPVVGKLVQWLPKAVYAFLMTIAAVLYQEDSAH*

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