SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G25470 | AT | Annotation by Michelle Graham. TAIR10: bacterial hemolysin-related | chr3:9233039-9235022 FORWARD LENGTH=301 | SoyBase | E_val: 1.00E-133 | ISS |
| GO:0019836 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hemolysis by symbiont of host erythrocytes | SoyBase | N/A | ISS |
| GO:0032259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| PTHR10436 | Panther | RIBOSOMAL PSEUDOURIDINE SYNTHASE | JGI | ISS | |
| PTHR10436:SF37 | Panther | RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D-RELATED | JGI | ISS | |
| PF01479 | PFAM | S4 domain | JGI | ISS | |
| PF01728 | PFAM | FtsJ-like methyltransferase | JGI | ISS | |
| UniRef100_B9SMR6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Hemolysin A, putative n=1 Tax=Ricinus communis RepID=B9SMR6_RICCO | SoyBase | E_val: 4.00E-160 | ISS |
| UniRef100_UPI00023387DC | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023387DC related cluster n=1 Tax=unknown RepID=UPI00023387DC | SoyBase | E_val: 0 | ISS |
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Glyma03g23860 not represented in the dataset |
Glyma03g23860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g12301 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g097100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g23860.2 sequence type=CDS gene model=Glyma03g23860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTTACAATTTCTGAAACACCCCTTAACCATCTCACGAGGTTTGCAGAACGAGACAACCTTAACTTTTCTTTCTCGGCTACGAAATCCGAAGCTCCCATTGTCGGTGAGATGCGAAGACAATGTTCAGATTCCAACTTCTTTCCGGAGCTATGCTACTGCAAAATCAGAAAAGGTTTTGCAAGTGAAGAAGAAAAAGCGGCTGGATGAAATATGTGTTGAAAAATATCAGCAATATAGTAGATCCATCATCCAGTCATGGATTTTGCAAGGAAAAGTATATGTGGATGGGAAGGTGATAAATAAAGCTGGTACCCCTGTGCCTGACAAAGCTGTTGTGGAGATAATAGCTGATATTCCCAAATATGTATGTAGAGCTGGACACAAGTTAGAAGCTGCCATTGAACAGCTTGGTGTTGATGTTACTGGTAAAGTAGCTCTTGATTCTGGGCTGTCAACTGGAGGATTTACTGACTGCTTACTTCAGTATGGTGCATCACATGTTTACGGAGTTGACGTAGGTTATGGACAGGTAGCTGACAAAATTCGAAGAGATGAGCGTGTATCAGTGATAGAACGGACAAATTTAAGATATCTTGCTGAACTCCCACAAAATGTTGATTTGGTGACTTTAGACCTCTCATTCATCTCTATTCTCTTGGTCATGCCTGCCGTGGTCAATGTCATGAAGGAAAATGCAGCTTTAGTGACTTTGGTTAAACCACAATTTGAAGCTCGTAGATCTCAAGTAGGAAAAGGCGGAATAGTGAAAGATCCTGCTGTTCATCAAGAGGTCCTTGAGAAGATTGTAAAGGGAGTAGAGAAGTTTGGTTTCTGTTGTAAAGGATGGATTGAGTCTCCTCTGAAAGGTGCTGAGGGTAATATAGAATTCCTTGTTCACTTCAACAGAACCCATAATACAAGGGTTCCTGAAGATCTGGAGTAG
>Glyma03g23860.2 sequence type=predicted peptide gene model=Glyma03g23860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALQFLKHPLTISRGLQNETTLTFLSRLRNPKLPLSVRCEDNVQIPTSFRSYATAKSEKVLQVKKKKRLDEICVEKYQQYSRSIIQSWILQGKVYVDGKVINKAGTPVPDKAVVEIIADIPKYVCRAGHKLEAAIEQLGVDVTGKVALDSGLSTGGFTDCLLQYGASHVYGVDVGYGQVADKIRRDERVSVIERTNLRYLAELPQNVDLVTLDLSFISILLVMPAVVNVMKENAALVTLVKPQFEARRSQVGKGGIVKDPAVHQEVLEKIVKGVEKFGFCCKGWIESPLKGAEGNIEFLVHFNRTHNTRVPEDLE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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