SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G00590 | AT | Annotation by Michelle Graham. TAIR10: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr4:252835-254880 FORWARD LENGTH=408 | SoyBase | E_val: 0 | ISS |
| GO:0033345 | GO-bp | Annotation by Michelle Graham. GO Biological Process: asparagine catabolic process via L-aspartate | SoyBase | N/A | ISS |
| GO:0051604 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein maturation | SoyBase | N/A | ISS |
| GO:0004298 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: threonine-type endopeptidase activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG1592 | KOG | Asparaginase | JGI | ISS | |
| PTHR10188 | Panther | PROTEASE T2 ASPARAGINASE | JGI | ISS | |
| PTHR10188:SF8 | Panther | THREONINE ASPARTASE 1 | JGI | ISS | |
| PF01112 | PFAM | Asparaginase | JGI | ISS | |
| UniRef100_B9RDN7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Threonine aspartase, putative n=1 Tax=Ricinus communis RepID=B9RDN7_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002336E85 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336E85 related cluster n=1 Tax=unknown RepID=UPI0002336E85 | SoyBase | E_val: 0 | ISS |
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Glyma03g23840 not represented in the dataset |
Glyma03g23840 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g096900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g23840.2 sequence type=transcript gene model=Glyma03g23840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCCCTTCTTGTTCGTTTCATTTTATTATTTTTCCTAGCTCGTGTCAAACAGAGTTCTAAATCTAAGCTTCAAAGAAAGAAAAAAGTGGAAGAAAAGAAGGGGGAAAGTCGTGAAAAAATGGAGGGAAAGAGGTATTTCGTGGCGGTTCACGTCGGCGCCGGTTACCACTCTCCGTCGAACGACAAAGCCCTCAGGTCCGCCATGAACCGCGCTTGCCTCGCCGCCGCGTCCGTTCTCTCTAACGGTTCGGGAACGCGCTTAGACGCCGTCGTAGCCGCCATCCAAGTGCTGGAGGACGATCCCTGCACAAACGCCGGCAGAGGCTCCAATCTGACCGAAGACGGTGGCGTGGAGTGCGATGCCAGTGTTATAGACGGAAAATCTGGTGCTTTTGGCGCTGTTGGAGCAGTTGCGGACCAGGTGTCCGAAATGCTATACAAATTGCTGCTTTATTGGCCAAAGAGCAAATGATGGGATCTCCATTGTTGGGTCGAATTCCTCCAATCTTCTTGGTGGGTGAAGGGGCTTGCAAATGGGCCAAGTCTAAGGACATTGCATTGCCACCAAGTATAGAGGAGGCCAATGAGTGGCTGGTCACAGAAAGGGCAAAAGCACAATGGATAAAATACAAATCCATGGTTGAATCTGCTAGATCTAAGACAGAGAACACTCCTGAGGGCGATTCTTCTGTCTATCAAAATGCCACAGTACCAGATTGTGCTTTGGAAGATCGCGTAATGGACACTGTTGGGGTTATTTGTATAGATAATGAGGGGCATGTAGCATCAGGAGCCTCCAGTGGTGGTATTGCTTTAAAGGTTAGTGGACGCATTGGGTTGGCAGCAATGTATGGTTCAGGTTGTTGGGCATCATCAAAAGGTCCCTTTGGGGCTCCATTCATGGCTGGTTGTTGCGTATCGGGGGCAGGAGAACACCTAATGAAAGGATTTGCGGCTAGGGAGTGCTGCGTTTCATTGTCACTCTCGCAGTCTGGTGCTGCCTCTGCTTGCACGAAAATTCTACGCTCTGTTGTTGAGGATGGCAGGCAATGTGGTACTGATAGCAGTGCAGGGATCTTGGTTGTGCAGTCAGATGCATCTTTGACAGATCAAGGAAAATCATCAAGGCTGAAAGCTGTAGAGATTGCTGCTGCATACACTTCCTTGTCTTTTGGAGTAGGGTATTTTGGAAGCTCTATGGAACGGCCCAAGGTTTCAATTCTTAGGAGTACAAAACAACAAAGCAAGACAGCAATAGATCAATTTGGAGCACGAATAGATCTTTCAAATGGATAGTTGGGTATGCCCATGGATCAAATTTCATCAGTGCTGAAGTGTTGAAATTCATATTCAGACTAATTGATTTTCCCTTGCATTGTGATCTTTCAATATTGTGCGGTACATTGGTGGACTGAGAATATGTAATTTCACCCGTGCAAAGCAAGTCTATATTCAATTTACAATTAGCATACTTTAGGCTGAGACATTTTGGTTGGATAGATATAAGTCTATATTCGATTTACAATTAGCATACTTTAGGCTGAGACATTTTGGTTGGATAGATATAAGGTTCATTTTGGATTGTTAAGAAATTCTATGGACTGTAGAATGTAATTAGTGGGTACGTGGGTGAAGAAAAGTTGCAGGAAACAGTATGTGTTGGAATGGTTGTTTGTGTTATTGAATTTTAGCCAATATTTGTACTAAGATGTGAACAGCATGGCGTGAAATGAGTAGTAACATGTTATGGTATTTTGTTCCTGCATTGATGTTT
>Glyma03g23840.1 sequence type=CDS gene model=Glyma03g23840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGGAAAGAGGTATTTCGTGGCGGTTCACGTCGGCGCCGGTTACCACTCTCCGTCGAACGACAAAGCCCTCAGGTCCGCCATGAACCGCGCTTGCCTCGCCGCCGCGTCCGTTCTCTCTAACGGTTCGGGAACGCGCTTAGACGCCGTCGTAGCCGCCATCCAAGTGCTGGAGGACGATCCCTGCACAAACGCCGGCAGAGGCTCCAATCTGACCGAAGACGGTGGCGTGGAGTGCGATGCCAGTGTTATAGACGGAAAATCTGGTGCTTTTGGCGCTGTTGGAGCAGTTGCGGGTGTCCGAAATGCTATACAAATTGCTGCTTTATTGGCCAAAGAGCAAATGATGGGATCTCCATTGTTGGGTCGAATTCCTCCAATCTTCTTGGTGGGTGAAGGGGCTTGCAAATGGGCCAAGTCTAAGGACATTGCATTGCCACCAAGTATAGAGGAGGCCAATGAGTGGCTGGTCACAGAAAGGGCAAAAGCACAATGGATAAAATACAAATCCATGGTTGAATCTGCTAGATCTAAGACAGAGAACACTCCTGAGGGCGATTCTTCTGTCTATCAAAATGCCACAGTACCAGATTGTGCTTTGGAAGATCGCGTAATGGACACTGTTGGGGTTATTTGTATAGATAATGAGGGGCATGTAGCATCAGGAGCCTCCAGTGGTGGTATTGCTTTAAAGGTTAGTGGACGCATTGGGTTGGCAGCAATGTATGGTTCAGGTTGTTGGGCATCATCAAAAGGTCCCTTTGGGGCTCCATTCATGGCTGGTTGTTGCGTATCGGGGGCAGGAGAACACCTAATGAAAGGATTTGCGGCTAGGGAGTGCTGCGTTTCATTGTCACTCTCGCAGTCTGGTGCTGCCTCTGCTTGCACGAAAATTCTACGCTCTGTTGTTGAGGATGGCAGGCAATGTGGTACTGATAGCAGTGCAGGGATCTTGGTTGTGCAGTCAGATGCATCTTTGACAGATCAAGGAAAATCATCAAGGCTGAAAGCTGTAGAGATTGCTGCTGCATACACTTCCTTGTCTTTTGGAGTAGGGTATTTTGGAAGCTCTATGGAACGGCCCAAGGTTTCAATTCTTAGGAGTACAAAACAACAAAGCAAGACAGCAATAGATCAATTTGGAGCACGAATAGATCTTTCAAATGGATAG >Glyma03g23840.2 sequence type=CDS gene model=Glyma03g23840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGGATCTCCATTGTTGGGTCGAATTCCTCCAATCTTCTTGGTGGGTGAAGGGGCTTGCAAATGGGCCAAGTCTAAGGACATTGCATTGCCACCAAGTATAGAGGAGGCCAATGAGTGGCTGGTCACAGAAAGGGCAAAAGCACAATGGATAAAATACAAATCCATGGTTGAATCTGCTAGATCTAAGACAGAGAACACTCCTGAGGGCGATTCTTCTGTCTATCAAAATGCCACAGTACCAGATTGTGCTTTGGAAGATCGCGTAATGGACACTGTTGGGGTTATTTGTATAGATAATGAGGGGCATGTAGCATCAGGAGCCTCCAGTGGTGGTATTGCTTTAAAGGTTAGTGGACGCATTGGGTTGGCAGCAATGTATGGTTCAGGTTGTTGGGCATCATCAAAAGGTCCCTTTGGGGCTCCATTCATGGCTGGTTGTTGCGTATCGGGGGCAGGAGAACACCTAATGAAAGGATTTGCGGCTAGGGAGTGCTGCGTTTCATTGTCACTCTCGCAGTCTGGTGCTGCCTCTGCTTGCACGAAAATTCTACGCTCTGTTGTTGAGGATGGCAGGCAATGTGGTACTGATAGCAGTGCAGGGATCTTGGTTGTGCAGTCAGATGCATCTTTGACAGATCAAGGAAAATCATCAAGGCTGAAAGCTGTAGAGATTGCTGCTGCATACACTTCCTTGTCTTTTGGAGTAGGGTATTTTGGAAGCTCTATGGAACGGCCCAAGGTTTCAATTCTTAGGAGTACAAAACAACAAAGCAAGACAGCAATAGATCAATTTGGAGCACGAATAGATCTTTCAAATGGATAG
>Glyma03g23840.1 sequence type=predicted peptide gene model=Glyma03g23840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGKRYFVAVHVGAGYHSPSNDKALRSAMNRACLAAASVLSNGSGTRLDAVVAAIQVLEDDPCTNAGRGSNLTEDGGVECDASVIDGKSGAFGAVGAVAGVRNAIQIAALLAKEQMMGSPLLGRIPPIFLVGEGACKWAKSKDIALPPSIEEANEWLVTERAKAQWIKYKSMVESARSKTENTPEGDSSVYQNATVPDCALEDRVMDTVGVICIDNEGHVASGASSGGIALKVSGRIGLAAMYGSGCWASSKGPFGAPFMAGCCVSGAGEHLMKGFAARECCVSLSLSQSGAASACTKILRSVVEDGRQCGTDSSAGILVVQSDASLTDQGKSSRLKAVEIAAAYTSLSFGVGYFGSSMERPKVSILRSTKQQSKTAIDQFGARIDLSNG* >Glyma03g23840.2 sequence type=predicted peptide gene model=Glyma03g23840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMGSPLLGRIPPIFLVGEGACKWAKSKDIALPPSIEEANEWLVTERAKAQWIKYKSMVESARSKTENTPEGDSSVYQNATVPDCALEDRVMDTVGVICIDNEGHVASGASSGGIALKVSGRIGLAAMYGSGCWASSKGPFGAPFMAGCCVSGAGEHLMKGFAARECCVSLSLSQSGAASACTKILRSVVEDGRQCGTDSSAGILVVQSDASLTDQGKSSRLKAVEIAAAYTSLSFGVGYFGSSMERPKVSILRSTKQQSKTAIDQFGARIDLSNG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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