Glyma03g23430 - SoyBase

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Report for Sequence Feature Glyma03g23430

Feature Type:	gene_model
Chromosome:	Gm03
Start:	30042510
stop:	30042662
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g23430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G27770	AT	Annotation by Michelle Graham. TAIR10: Ribosomal L22e protein family \| chr5:9836166-9837113 FORWARD LENGTH=124	SoyBase	E_val: 2.00E-14	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
PTHR10064	Panther	60S RIBOSOMAL PROTEIN L22	JGI		ISS
PF01776	PFAM	Ribosomal L22e protein family	JGI		ISS
UniRef100_C6SVK2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SVK2_SOYBN	SoyBase	E_val: 4.00E-14	ISS
UniRef100_D7M5H6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L22 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M5H6_ARALL	SoyBase	E_val: 2.00E-13	ISS

Expression Patterns of Glyma03g23430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g23430 not represented in the dataset	Glyma03g23430 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g23430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma03g23430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g23430

Limit To All Plant Sequences

>Glyma03g23430.1   sequence type=CDS   gene model=Glyma03g23430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGGAAGAAGAAGAAGGATTTTCTCTGGAGAAGTTCCTTCAGGAGAGGATTAAGGTCGACGACAAGGCCGGTGCACTCGGCAATTCCATTTCCATCACCAAGGACAAGAGCAACAACACCGTCACCTCCGACAGCAACTTCTCTAAACGATAC

Predicted protein sequences of Glyma03g23430

Limit To All Plant Sequences

>Glyma03g23430.1   sequence type=predicted peptide   gene model=Glyma03g23430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GEEEEGFSLEKFLQERIKVDDKAGALGNSISITKDKSNNTVTSDSNFSKRY

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