SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G58220 | AT | Annotation by Michelle Graham. TAIR10: transthyretin-like protein | chr5:23554546-23555861 REVERSE LENGTH=324 | SoyBase | E_val: 4.00E-129 | ISS |
| GO:0001560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell growth by extracellular stimulus | SoyBase | N/A | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0009742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: brassinosteroid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0019428 | GO-bp | Annotation by Michelle Graham. GO Biological Process: allantoin biosynthetic process | SoyBase | N/A | ISS |
| GO:0031347 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response | SoyBase | N/A | ISS |
| GO:0051289 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein homotetramerization | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0031234 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to internal side of plasma membrane | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0033971 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydroxyisourate hydrolase activity | SoyBase | N/A | ISS |
| GO:0051997 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity | SoyBase | N/A | ISS |
| KOG3006 | KOG | Transthyretin and related proteins | JGI | ISS | |
| PTHR10395 | Panther | URICASE AND TRANSTHYRETIN-RELATED | JGI | ISS | |
| PTHR10395:SF7 | Panther | TRANSTHYRETIN | JGI | ISS | |
| PF00576 | PFAM | HIUase/Transthyretin family | JGI | ISS | |
| PF09349 | PFAM | OHCU decarboxylase | JGI | ISS | |
| UniRef100_C6TNM5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 5-hydroxyisourate hydrolase n=1 Tax=Glycine max RepID=C6TNM5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_C6TNM5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: 5-hydroxyisourate hydrolase n=1 Tax=Glycine max RepID=C6TNM5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g22930 not represented in the dataset |
Glyma03g22930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g08930 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g093200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g22930.2 sequence type=transcript gene model=Glyma03g22930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTTCCCCTTTCAGCTGGCCAAAAAGAACTTCTCACGTGGCATTTTGTTCGTGTCCGAAGAACAAGACTAAGGTGCTGACACATCCTCTTCTCTTCTTTTTTTTCCCCAAAAATCTTACACAGATCCTCAAACCATAAAAACACACTCCAATTCCAATTGAAATGTTCAAAACACAAGCGAAGTGAAAAGAGAGTGAGTATCGTTGGAAAAAATGGAGTTCAGTTTCGATGAGAAGGACTTTGTGTCGTGCTGCGGGAGCACTAAATTCGCGAAGGAAATGGCTTCGGCCTCTCCTTTCGGTTCGTTGCAGGACGCTGTTTCTGTTGCCAGAGACGTTTGGTTCAACAGCGTTGATGTCAATGGTTGGCTTCAGGCCTTCTCTGCGCACCCTCAGATCGGTCAAAGCCACGCTCCCTCTGTTGCCTCTGAAGCCAGTGCTCAGTGGAGTAAGGGAGAGCAATCAACTGCTTTAGCAACTGCTACTGGTTCGAGCTTACAGGAACTATCTGAATGGAATGCTCGGTACAGGGAAAAGTTTGGGTTTGTATTTCTCATTTGTGCAGCTGGGAGAAGTACTGATGAGATACTTGCTGAACTGAAGAGACGTTATACAAACAGGCCAATTGTTGAATTTGAGATTGCTGCTCGGGAGCAAATGAAAATTACAGAACTACGCCTTGCAAAGCTCTTTTCAAGTAGAGAAAACATTTCTTCTACAGCTGATAAGAATTCCACTGCTAGAAAGGCAGAAGATCGTATAAGCATTATCAGTAGTCACATGACTGCTACTTCAGAGAGTTCAACAGGCAAATCAATTCAGCATCCTGCCAGAACCCGCCCTCCCATTACCACTCACGTGTTGGATGTTTCGCGGGGGGCTCCAGCTGCTGGTATTGATGTACTTCTGGAGGTGTGGAGGGGCACTCAGTCTCAGCCAACATTTGGGGCCACAGGCGGTGGCAGTTGGGTGTTCCAAGGGTCTTCAAAGACGGATTCGGATGGCCGCAGTGGTCAACTGTTGAGCATAGTCGATGAAGCGAGTCCAGGGATATACAGGATAAGTTTCAACACTGGGAAGTACATCCCAAATGGTTTCTTTCCTTATGTGTCTATAGTGTTTGAAATCAAAGAGTCACAAAAAAGGGAACATTTTCATGTTCCTCTCCTACTTTCACCGTTCTCATTCAGCACTTACCGTGGAAGCTAGGAATATAGGGACAGTTGCCAAAAGAATGCCATGAATTTCTGAAGATTTGATGAAGGGAACTTGTGTTTTTGCTCATAGAACGTGGTTAAAAGGGTACCAAATATAGAAAGGTAATCAATGTATTATTGTTTAGTCAATGCATGTTATATAAGTTCTTTTGAATTAATAATCGAGACTTGCAATATTTGAGACGCTAAATGGCACATTACAGTGCATGAGCAAGGGTTTATGCCTTTTTGCTAGAAGTTTCAATTTACAAACAAGTTAACTCTTATTTGCATTACTTTTGCTTTTAATGATGTAATTATTCATGGAAGTATATTGACATTGCCTCCATATTTTGTTTTTC
>Glyma03g22930.1 sequence type=CDS gene model=Glyma03g22930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTTCAGTTTCGATGAGAAGGACTTTGTGTCGTGCTGCGGGAGCACTAAATTCGCGAAGGAAATGGCTTCGGCCTCTCCTTTCGGTTCGTTGCAGGACGCTGTTTCTGTTGCCAGAGACGTTTGGTTCAACAGCGTTGATGTCAATGGTTGGCTTCAGGCCTTCTCTGCGCACCCTCAGATCGGTCAAAGCCACGCTCCCTCTGTTGCCTCTGAAGCCAGTGCTCAGTGGAGTAAGGGAGAGCAATCAACTGCTTTAGCAACTGCTACTGGTTCGAGCTTACAGGAACTATCTGAATGGAATGCTCGGTACAGGGAAAAGTTTGGGTTTGTATTTCTCATTTGTGCAGCTGGGAGAAGTACTGATGAGATACTTGCTGAACTGAAGAGACGTTATACAAACAGGCCAATTGTTGAATTTGAGATTGCTGCTCGGGAGCAAATGAAAATTACAGAACTACGCCTTGCAAAGCTCTTTTCAAGTAGAGAAAACATTTCTTCTACAGCTGATAAGAATTCCACTGCTAGAAAGGCAGAAGAAGATCGTATAAGCATTATCAGTAGTCACATGACTGCTACTTCAGAGAGTTCAACAGGCAAATCAATTCAGCATCCTGCCAGAACCCGCCCTCCCATTACCACTCACGTGTTGGATGTTTCGCGGGGGGCTCCAGCTGCTGGTATTGATGTACTTCTGGAGGTGTGGAGGGGCACTCAGTCTCAGCCAACATTTGGGGCCACAGGCGGTGGCAGTTGGGTGTTCCAAGGGTCTTCAAAGACGGATTCGGATGGCCGCAGTGGTCAACTGTTGAGCATAGTCGATGAAGCGAGTCCAGGGATATACAGGATAAGTTTCAACACTGGGAAGTACATCCCAAATGGTTTCTTTCCTTATGTGTCTATAGTGTTTGAAATCAAAGAGTCACAAAAAAGGGAACATTTTCATGTTCCTCTCCTACTTTCACCGTTCTCATTCAGCACTTACCGTGGAAGCTAG >Glyma03g22930.2 sequence type=CDS gene model=Glyma03g22930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTTCAGTTTCGATGAGAAGGACTTTGTGTCGTGCTGCGGGAGCACTAAATTCGCGAAGGAAATGGCTTCGGCCTCTCCTTTCGGTTCGTTGCAGGACGCTGTTTCTGTTGCCAGAGACGTTTGGTTCAACAGCGTTGATGTCAATGGTTGGCTTCAGGCCTTCTCTGCGCACCCTCAGATCGGTCAAAGCCACGCTCCCTCTGTTGCCTCTGAAGCCAGTGCTCAGTGGAGTAAGGGAGAGCAATCAACTGCTTTAGCAACTGCTACTGGTTCGAGCTTACAGGAACTATCTGAATGGAATGCTCGGTACAGGGAAAAGTTTGGGTTTGTATTTCTCATTTGTGCAGCTGGGAGAAGTACTGATGAGATACTTGCTGAACTGAAGAGACGTTATACAAACAGGCCAATTGTTGAATTTGAGATTGCTGCTCGGGAGCAAATGAAAATTACAGAACTACGCCTTGCAAAGCTCTTTTCAAGTAGAGAAAACATTTCTTCTACAGCTGATAAGAATTCCACTGCTAGAAAGGCAGAAGATCGTATAAGCATTATCAGTAGTCACATGACTGCTACTTCAGAGAGTTCAACAGGCAAATCAATTCAGCATCCTGCCAGAACCCGCCCTCCCATTACCACTCACGTGTTGGATGTTTCGCGGGGGGCTCCAGCTGCTGGTATTGATGTACTTCTGGAGGTGTGGAGGGGCACTCAGTCTCAGCCAACATTTGGGGCCACAGGCGGTGGCAGTTGGGTGTTCCAAGGGTCTTCAAAGACGGATTCGGATGGCCGCAGTGGTCAACTGTTGAGCATAGTCGATGAAGCGAGTCCAGGGATATACAGGATAAGTTTCAACACTGGGAAGTACATCCCAAATGGTTTCTTTCCTTATGTGTCTATAGTGTTTGAAATCAAAGAGTCACAAAAAAGGGAACATTTTCATGTTCCTCTCCTACTTTCACCGTTCTCATTCAGCACTTACCGTGGAAGCTAG
>Glyma03g22930.1 sequence type=predicted peptide gene model=Glyma03g22930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEFSFDEKDFVSCCGSTKFAKEMASASPFGSLQDAVSVARDVWFNSVDVNGWLQAFSAHPQIGQSHAPSVASEASAQWSKGEQSTALATATGSSLQELSEWNARYREKFGFVFLICAAGRSTDEILAELKRRYTNRPIVEFEIAAREQMKITELRLAKLFSSRENISSTADKNSTARKAEEDRISIISSHMTATSESSTGKSIQHPARTRPPITTHVLDVSRGAPAAGIDVLLEVWRGTQSQPTFGATGGGSWVFQGSSKTDSDGRSGQLLSIVDEASPGIYRISFNTGKYIPNGFFPYVSIVFEIKESQKREHFHVPLLLSPFSFSTYRGS* >Glyma03g22930.2 sequence type=predicted peptide gene model=Glyma03g22930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEFSFDEKDFVSCCGSTKFAKEMASASPFGSLQDAVSVARDVWFNSVDVNGWLQAFSAHPQIGQSHAPSVASEASAQWSKGEQSTALATATGSSLQELSEWNARYREKFGFVFLICAAGRSTDEILAELKRRYTNRPIVEFEIAAREQMKITELRLAKLFSSRENISSTADKNSTARKAEDRISIISSHMTATSESSTGKSIQHPARTRPPITTHVLDVSRGAPAAGIDVLLEVWRGTQSQPTFGATGGGSWVFQGSSKTDSDGRSGQLLSIVDEASPGIYRISFNTGKYIPNGFFPYVSIVFEIKESQKREHFHVPLLLSPFSFSTYRGS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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