SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G31530 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr4:15282281-15284064 FORWARD LENGTH=324 | SoyBase | E_val: 3.00E-140 | ISS |
| GO:0006694 | GO-bp | Annotation by Michelle Graham. GO Biological Process: steroid biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003854 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0016616 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| KOG1203 | KOG | Predicted dehydrogenase | JGI | ISS | |
| PTHR10366 | Panther | NAD DEPENDENT EPIMERASE/DEHYDRATASE | JGI | ISS | |
| PTHR10366:SF138 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01073 | PFAM | 3-beta hydroxysteroid dehydrogenase/isomerase family | JGI | ISS | |
| UniRef100_D7MB55 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Catalytic/ coenzyme binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MB55_ARALL | SoyBase | E_val: 5.00E-140 | ISS |
| UniRef100_I1JMB3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JMB3_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma03g22780 not represented in the dataset |
Glyma03g22780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g09170 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g092500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g22780.2 sequence type=transcript gene model=Glyma03g22780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTCTTTTTCTAATAATTCTATTATTGGCTGAAGCATCAAACATCTAAGGATTAATCTGGTTACAAACATATGGGGACTGATGTGGTGACACCCCAATCTTTAGAGGAGGAAATTGAAGGGCAGCTGGTAGTAGCATCACTGCTTCAGCAGAATATTAAGTCACGGTTGATACTTAGGAATCCTGAGAAAGCCACAGAATTGTTTGGTGAACAAGATAAGGAGAAACTGCAGGTATTCAAAGGAGACACAAGGAAGCAGGAAGATTTGGATCCATCAATATTTGAGGGTGTCACACACGTGATTTGCTGCACAGGAACAACAGCTTTTCCTTCAAGGCGGTGGGATGATGATAATACACCAGAAAGGGTTGATTGGGTGGGACTAAAGAATCTAGTATCTGCATTGCCTTCCTCAGTGAAGAGAGTTGTTCTTGTGTCATCAATAGGTGTGACCAAGTTCAATGAATTGCCATGGAGCATTATGAACCTATTTGGTGTCCTGAAGTATAAGAAGATGGGGGAGGATTTTCTTAGGAATTCTGGCCTTCCATTTACCATAATCAGACCTGGAAGGTTGACAGATGGGCCATACACATCTTATGATCTAAATACTTTACTCAAAGCAACAGCTGGACAACGACGAGCAGTCCTTATAGGTCAAGGAGATAAACTAGTGGGAGAGGCCAGCAGAATAGTGGTTGCTGAAGCTTGCGTGCAGGCACTAGATCTTGAAGTCACTGAAAACCAAGTATATGAAGTTAACTCTGTTGAGGGGGAAGGTCCTGGAAATGAAGCTAAGAAGTGGCAAGAATTATTCGAGGCTGCAAACTCCCGCTAATTGGACTACCAATGAACTTTTATAGCATTTCAAGCCATGTGTGCCAATTACTCCCCAATATACCAAACACACTAAAGAAAACATGTCTAAAGGAGGAAAAGAAGAAGAAAAAAGAGTAAGTCTAAAGTAAGAAATCAGCCAAAAAAAGAAAGAAATGTTGGATCATTTTGCTTTCTTACTATTATAAATATTTTTGGCAATGTTATTTGATACGAATTAGTTGATAAATTAGAAAAATAATGGTATACATATTTGGTTTAGAAAAGAAATAAGAAAGAAAGGAAAAGGCCATAAAGAGAAATTAAAGCAAACATGTAAAGGTAAGACGATTTTTTAGATTGTTTGTTAAGAAAGAAAATAATATATAAGATTAAAAT
>Glyma03g22780.1 sequence type=CDS gene model=Glyma03g22780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACGTTGGAATTGTTTTGTGGTATCGTTCGTGTTGTGTTGTGCTGTGTTTCATCATTCATGGCTTCTTCTACAACTCCCACACTCCCTCTGGCTTTCCCCCAGCGACATCACTCTGTTTCTCACCGTCAAGTTCTCTTCTTCGCCAAATTCAGTAACAAAGTTTCGCTCTCTTCTTCTGTGGCTTCGAAACGGAGTTGTAAATCAAAGTGCTTTTATGCAAAAGTGCAAAACGCACTCAACGAGGAAGCGGTTGAAACTCAGAGTTCGGAGTTGGAGGAGGATACCCAAAGTACCCCTTCTTCCTCCAAACTGGTCCTTGTTGTTGGTGGCTCCGGAGGCGTTGGGCAGCTGGTAGTAGCATCACTGCTTCAGCAGAATATTAAGTCACGGTTGATACTTAGGAATCCTGAGAAAGCCACAGAATTGTTTGGTGAACAAGATAAGGAGAAACTGCAGGTATTCAAAGGAGACACAAGGAAGCAGGAAGATTTGGATCCATCAATATTTGAGGGTGTCACACACGTGATTTGCTGCACAGGAACAACAGCTTTTCCTTCAAGGCGGTGGGATGATGATAATACACCAGAAAGGGTTGATTGGGTGGGACTAAAGAATCTAGTATCTGCATTGCCTTCCTCAGTGAAGAGAGTTGTTCTTGTGTCATCAATAGGTGTGACCAAGTTCAATGAATTGCCATGGAGCATTATGAACCTATTTGGTGTCCTGAAGTATAAGAAGATGGGGGAGGATTTTCTTAGGAATTCTGGCCTTCCATTTACCATAATCAGACCTGGAAGGTTGACAGATGGGCCATACACATCTTATGATCTAAATACTTTACTCAAAGCAACAGCTGGACAACGACGAGCAGTCCTTATAGGTCAAGGAGATAAACTAGTGGGAGAGGCCAGCAGAATAGTGGTTGCTGAAGCTTGCGTGCAGGCACTAGATCTTGAAGTCACTGAAAACCAAGTATATGAAGTTAACTCTGTTGAGGGGGAAGGTCCTGGAAATGAAGCTAAGAAGTGGCAAGAATTATTCGAGGCTGCAAACTCCCGCTAA >Glyma03g22780.2 sequence type=CDS gene model=Glyma03g22780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGACTGATGTGGTGACACCCCAATCTTTAGAGGAGGAAATTGAAGGGCAGCTGGTAGTAGCATCACTGCTTCAGCAGAATATTAAGTCACGGTTGATACTTAGGAATCCTGAGAAAGCCACAGAATTGTTTGGTGAACAAGATAAGGAGAAACTGCAGGTATTCAAAGGAGACACAAGGAAGCAGGAAGATTTGGATCCATCAATATTTGAGGGTGTCACACACGTGATTTGCTGCACAGGAACAACAGCTTTTCCTTCAAGGCGGTGGGATGATGATAATACACCAGAAAGGGTTGATTGGGTGGGACTAAAGAATCTAGTATCTGCATTGCCTTCCTCAGTGAAGAGAGTTGTTCTTGTGTCATCAATAGGTGTGACCAAGTTCAATGAATTGCCATGGAGCATTATGAACCTATTTGGTGTCCTGAAGTATAAGAAGATGGGGGAGGATTTTCTTAGGAATTCTGGCCTTCCATTTACCATAATCAGACCTGGAAGGTTGACAGATGGGCCATACACATCTTATGATCTAAATACTTTACTCAAAGCAACAGCTGGACAACGACGAGCAGTCCTTATAGGTCAAGGAGATAAACTAGTGGGAGAGGCCAGCAGAATAGTGGTTGCTGAAGCTTGCGTGCAGGCACTAGATCTTGAAGTCACTGAAAACCAAGTATATGAAGTTAACTCTGTTGAGGGGGAAGGTCCTGGAAATGAAGCTAAGAAGTGGCAAGAATTATTCGAGGCTGCAAACTCCCGCTAA
>Glyma03g22780.1 sequence type=predicted peptide gene model=Glyma03g22780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTLELFCGIVRVVLCCVSSFMASSTTPTLPLAFPQRHHSVSHRQVLFFAKFSNKVSLSSSVASKRSCKSKCFYAKVQNALNEEAVETQSSELEEDTQSTPSSSKLVLVVGGSGGVGQLVVASLLQQNIKSRLILRNPEKATELFGEQDKEKLQVFKGDTRKQEDLDPSIFEGVTHVICCTGTTAFPSRRWDDDNTPERVDWVGLKNLVSALPSSVKRVVLVSSIGVTKFNELPWSIMNLFGVLKYKKMGEDFLRNSGLPFTIIRPGRLTDGPYTSYDLNTLLKATAGQRRAVLIGQGDKLVGEASRIVVAEACVQALDLEVTENQVYEVNSVEGEGPGNEAKKWQELFEAANSR* >Glyma03g22780.2 sequence type=predicted peptide gene model=Glyma03g22780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTDVVTPQSLEEEIEGQLVVASLLQQNIKSRLILRNPEKATELFGEQDKEKLQVFKGDTRKQEDLDPSIFEGVTHVICCTGTTAFPSRRWDDDNTPERVDWVGLKNLVSALPSSVKRVVLVSSIGVTKFNELPWSIMNLFGVLKYKKMGEDFLRNSGLPFTIIRPGRLTDGPYTSYDLNTLLKATAGQRRAVLIGQGDKLVGEASRIVVAEACVQALDLEVTENQVYEVNSVEGEGPGNEAKKWQELFEAANSR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
