Glyma03g22670 - SoyBase

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Report for Sequence Feature Glyma03g22670

Feature Type:	gene_model
Chromosome:	Gm03
Start:	29082024
stop:	29085145
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g22670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G43280	AT	Annotation by Michelle Graham. TAIR10: Far-red impaired responsive (FAR1) family protein \| chr2:17989739-17990861 FORWARD LENGTH=206	SoyBase	E_val: 3.00E-52	ISS
GO:0006301	GO-bp	Annotation by Michelle Graham. GO Biological Process: postreplication repair	SoyBase	N/A	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF03101	PFAM	FAR1 DNA-binding domain	JGI		ISS
UniRef100_D7LJZ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Far-red impaired responsive family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LJZ7_ARALL	SoyBase	E_val: 7.00E-51	ISS
UniRef100_I1JMA8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JMA8_SOYBN	SoyBase	E_val: 4.00E-126	ISS

Expression Patterns of Glyma03g22670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g22670 not represented in the dataset	Glyma03g22670 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g22670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g091500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g22670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g22670

Limit To All Plant Sequences

>Glyma03g22670.2   sequence type=transcript   gene model=Glyma03g22670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACAAAATGAGAGAAGTCATAAATGACCAAAAACATAAAAATCATGACGACTTCCTTCGTTGAACACACATTTCCATTGTTCAACTCTCACACGTTCTATTCCACCCAATTAACCCTACTTTCACATTCCCCTTTGTTAACTCGTACCAATGGATTTGGAAGCTGTGGCAGAGGCTGTTGAAAATTCTGCTGAAATAATATCAGCAGCATGTGAAGGCAGTTCCATTGAGGAGCCAAATGTTGGGATGGAGTTTCAGTCTGAAGAAGCTGCCAAGAACTTCTATGAAGAATATGCGAGACGGGAAGGGTTCGTTGTGCGCCTTGATCGCTGCCATCGTTCTGAGGTTGACAAGCAAATCATTTCACGCCGTTTTTCGTGCAATAAGCAAGGTTTTCATGTGAGGGTACGAAATAAAACCAAGCCTGTTCATAAACCACGGGCTAGCATAAGAGAAGGCTGTGAAGCTATGATGTATGTTAAAGTTAATACATGCGGGAAGTGGGTGGTTACTAAATTTGTGAAGGAACACAGTCATCTGCTAAATGCTTCTGCTTTGCCTTATAATTCACTGATAGAGTCAAAGGATAGGATAATTCAACAACTCGCAAAGGAACTTGAGCACCAAGATCGATTATGTCAGCATTATCGCAGGCAGCTATTCTCCCTTCTGGAAACTGTTGACGAACAAACAAAATGTTTATCAACAAAAGTTGAACTTGTTGTTAACACCGTAAAAAAACTTGAGAATGAAGTACAAAAGCCTTTGATTTGAACATTGACTAACTTTCAGCCAGGTTTTGTTAGAAAGCAAATTCTTTTGCTTCAACTTTTGATATTAACATGGGTCTAATGTAAAGGTTTGTTAACCATTAATAATAATGTCTGGTCTTGGGGATGTTACATTTAGTGCATCTAGGCAAATATTTACTTTGCTGATTTTTCAGTTAGGTAAAGATTGAGAGGGGTTTGATAATTTTCTTTTCATACAAATAGATCCTGAAAATTGTCAATGTATAATTAAGTACTGCAGACAGGATTTTCTTTCAAATCTTTTTTCTTGTACATGAATCTTGGAAACTAAACTTAATAAAATGTAGTTGAGAGATCTCATTTTTTTTTTAA

>Glyma03g22670.3   sequence type=transcript   gene model=Glyma03g22670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACAAAATGAGAGAAGTCATAAATGACCAAAAACATAAAAATCATGACGACTTCCTTCGTTGAACACACATTTCCATTGTTCAACTCTCACACGTTCTATTCCACCCAATTAACCCTACTTTCACATTCCCCTTTGTTAACTCGTACCAATGGATTTGGAAGCTGTGGCAGAGGCTGTTGAAAATTCTGCTGAAATAATATCAGCAGCATGTGAAGGCAGTTCCATTGAGGAGCCAAATGTTGGGATGGAGTTTCAGTCTGAAGAAGCTGCCAAGAACTTCTATGAAGAATATGCGAGACGGGAAGGGTTCGTTGTGCGCCTTGATCGCTGCCATCGTTCTGAGGTTGACAAGCAAATCATTTCACGCCGTTTTTCGTGCAATAAGCAAGGTTTTCATGTGAGGGAGTCAAAGGATAGGATAATTCAACAACTCGCAAAGGAACTTGAGCACCAAGATCGATTATGTCAGCATTATCGCAGGCAGCTATTCTCCCTTCTGGAAACTGTTGACGAACAAACAAAATGTTTATCAACAAAAGTTGAACTTGTTGTTAACACCGTAAAAAAACTTGAGAATGAAGTACAAAAGCCTTTGATTTGAACATTGACTAACTTTCAGCCAGGTTTTGTTAGAAAGCAAATTCTTTTGCTTCAACTTTTGATATTAACATGGGTCTAATGTAAAGGTTTGTTAACCATTAATAATAATGTCTGGTCTTGGGGATGTTACATTTAGTGCATCTAGGCAAATATTTACTTTGCTGATTTTTCAGTTAGGTAAAGATTGAGAGGGGTTTGATAATTTTCTTTTCATACAAATAGATCCTGAAAATTGTCAATGTATAATTAAGTACTGCAGACAGGATTTTCTTTCAAATCTTTTTTCTTGTACATGAATCTTGGAAACTAAACTTAATAAAATGTAGTTGAGAGATCTCATTTTTTTTTTAA

>Glyma03g22670.4   sequence type=transcript   gene model=Glyma03g22670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACTTCCTTCGTTGAACACACATTTCCATTGTTCAACTCTCACACGTTCTATTCCACCCAATTAACCCTACTTTCACATTCCCCTTTGTTAACTCGTACCAAAGGCTGTTGAAAATTCTGCTGAAATAATATCAGCAGCATGTGAAGGCAGTTCCATTGAGGAGCCAAATGTTGGGATGGAGTTTCAGTCTGAAGAAGCTGCCAAGAACTTCTATGAAGAATATGCGAGACGGGAAGGGTTCGTTGTGCGCCTTGATCGCTGCCATCGTTCTGAGGTTGACAAGCAAATCATTTCACGCCGTTTTTCGTGCAATAAGCAAGGTTTTCATGTGAGGGTACGAAATAAAACCAAGCCTGTTCATAAACCACGGGCTAGCATAAGAGAAGGCTGTGAAGCTATGATGTATGTTAAAGTTAATACATGCGGGAAGTGGGTGGTTACTAAATTTGTGAAGGAACACAGTCATCTGCTAAATGCTTCTGCTTTGCCTTATAATTCACTGATAGTGAGTCTTATCTTCTTCAGTCCCAGACATTGAATAGTTAATTCTCTGCGTTG

Coding sequences of Glyma03g22670

Limit To All Plant Sequences

>Glyma03g22670.1   sequence type=CDS   gene model=Glyma03g22670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTTCAGTCTGAAGAAGCTGCCAAGAACTTCTATGAAGAATATGCGAGACGGGAAGGGTTCGTTGTGCGCCTTGATCGCTGCCATCGTTCTGAGGTTGACAAGCAAATCATTTCACGCCGTTTTTCGTGCAATAAGCAAGGTTTTCATGTGAGGGTACGAAATAAAACCAAGCCTGTTCATAAACCACGGGCTAGCATAAGAGAAGGCTGTGAAGCTATGATGTATGTTAAAGTTAATACATGCGGGAAGTGGGTGGTTACTAAATTTGTGAAGGAACACAGTCATCTGCTAAATGCTTCTGCTTTGCCTTATAATTCACTGATAGAGTCAAAGGATAGGATAATTCAACAACTCGCAAAGGAACTTGAGCACCAAGATCGATTATGTCAGCATTATCGCAGGCAGCTATTCTCCCTTCTGGAAACTGTTGACGAACAAACAAAATGTTTATCAACAAAAGTTGAACTTGTTGTTAACACCGTAAAAAAACTTGAGAATGAAGTACAAAAGCCTTTGATTTGA

>Glyma03g22670.2   sequence type=CDS   gene model=Glyma03g22670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTGGAAGCTGTGGCAGAGGCTGTTGAAAATTCTGCTGAAATAATATCAGCAGCATGTGAAGGCAGTTCCATTGAGGAGCCAAATGTTGGGATGGAGTTTCAGTCTGAAGAAGCTGCCAAGAACTTCTATGAAGAATATGCGAGACGGGAAGGGTTCGTTGTGCGCCTTGATCGCTGCCATCGTTCTGAGGTTGACAAGCAAATCATTTCACGCCGTTTTTCGTGCAATAAGCAAGGTTTTCATGTGAGGGTACGAAATAAAACCAAGCCTGTTCATAAACCACGGGCTAGCATAAGAGAAGGCTGTGAAGCTATGATGTATGTTAAAGTTAATACATGCGGGAAGTGGGTGGTTACTAAATTTGTGAAGGAACACAGTCATCTGCTAAATGCTTCTGCTTTGCCTTATAATTCACTGATAGAGTCAAAGGATAGGATAATTCAACAACTCGCAAAGGAACTTGAGCACCAAGATCGATTATGTCAGCATTATCGCAGGCAGCTATTCTCCCTTCTGGAAACTGTTGACGAACAAACAAAATGTTTATCAACAAAAGTTGAACTTGTTGTTAACACCGTAAAAAAACTTGAGAATGAAGTACAAAAGCCTTTGATTTGA

>Glyma03g22670.3   sequence type=CDS   gene model=Glyma03g22670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTGGAAGCTGTGGCAGAGGCTGTTGAAAATTCTGCTGAAATAATATCAGCAGCATGTGAAGGCAGTTCCATTGAGGAGCCAAATGTTGGGATGGAGTTTCAGTCTGAAGAAGCTGCCAAGAACTTCTATGAAGAATATGCGAGACGGGAAGGGTTCGTTGTGCGCCTTGATCGCTGCCATCGTTCTGAGGTTGACAAGCAAATCATTTCACGCCGTTTTTCGTGCAATAAGCAAGGTTTTCATGTGAGGGAGTCAAAGGATAGGATAATTCAACAACTCGCAAAGGAACTTGAGCACCAAGATCGATTATGTCAGCATTATCGCAGGCAGCTATTCTCCCTTCTGGAAACTGTTGACGAACAAACAAAATGTTTATCAACAAAAGTTGAACTTGTTGTTAACACCGTAAAAAAACTTGAGAATGAAGTACAAAAGCCTTTGATTTGA

>Glyma03g22670.4   sequence type=CDS   gene model=Glyma03g22670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTTCAGTCTGAAGAAGCTGCCAAGAACTTCTATGAAGAATATGCGAGACGGGAAGGGTTCGTTGTGCGCCTTGATCGCTGCCATCGTTCTGAGGTTGACAAGCAAATCATTTCACGCCGTTTTTCGTGCAATAAGCAAGGTTTTCATGTGAGGGTACGAAATAAAACCAAGCCTGTTCATAAACCACGGGCTAGCATAAGAGAAGGCTGTGAAGCTATGATGTATGTTAAAGTTAATACATGCGGGAAGTGGGTGGTTACTAAATTTGTGAAGGAACACAGTCATCTGCTAAATGCTTCTGCTTTGCCTTATAATTCACTGATAGTGAGTCTTATCTTCTTCAGTCCCAGACATTGA

Predicted protein sequences of Glyma03g22670

Limit To All Plant Sequences

>Glyma03g22670.1   sequence type=predicted peptide   gene model=Glyma03g22670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFQSEEAAKNFYEEYARREGFVVRLDRCHRSEVDKQIISRRFSCNKQGFHVRVRNKTKPVHKPRASIREGCEAMMYVKVNTCGKWVVTKFVKEHSHLLNASALPYNSLIESKDRIIQQLAKELEHQDRLCQHYRRQLFSLLETVDEQTKCLSTKVELVVNTVKKLENEVQKPLI*

>Glyma03g22670.2   sequence type=predicted peptide   gene model=Glyma03g22670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLEAVAEAVENSAEIISAACEGSSIEEPNVGMEFQSEEAAKNFYEEYARREGFVVRLDRCHRSEVDKQIISRRFSCNKQGFHVRVRNKTKPVHKPRASIREGCEAMMYVKVNTCGKWVVTKFVKEHSHLLNASALPYNSLIESKDRIIQQLAKELEHQDRLCQHYRRQLFSLLETVDEQTKCLSTKVELVVNTVKKLENEVQKPLI*

>Glyma03g22670.3   sequence type=predicted peptide   gene model=Glyma03g22670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLEAVAEAVENSAEIISAACEGSSIEEPNVGMEFQSEEAAKNFYEEYARREGFVVRLDRCHRSEVDKQIISRRFSCNKQGFHVRESKDRIIQQLAKELEHQDRLCQHYRRQLFSLLETVDEQTKCLSTKVELVVNTVKKLENEVQKPLI*

>Glyma03g22670.4   sequence type=predicted peptide   gene model=Glyma03g22670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFQSEEAAKNFYEEYARREGFVVRLDRCHRSEVDKQIISRRFSCNKQGFHVRVRNKTKPVHKPRASIREGCEAMMYVKVNTCGKWVVTKFVKEHSHLLNASALPYNSLIVSLIFFSPRH*

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