Glyma03g22526 - SoyBase

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Report for Sequence Feature Glyma03g22526

Feature Type:	gene_model
Chromosome:	Gm03
Start:	28843026
stop:	28847674
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g22526

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G60900	AT	Annotation by Michelle Graham. TAIR10: receptor-like protein kinase 1 \| chr5:24498467-24501494 REVERSE LENGTH=748	SoyBase	E_val: 1.00E-40	ISS
GO:0000165	GO-bp	Annotation by Michelle Graham. GO Biological Process: MAPK cascade	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010310	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0035304	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PF01453	PFAM	D-mannose binding lectin	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_G7LEC0	UniRef	Annotation by Michelle Graham. Best UniRef hit: S-locus-specific glycoprotein S6 n=1 Tax=Medicago truncatula RepID=G7LEC0_MEDTR	SoyBase	E_val: 3.00E-89	ISS
UniRef100_G7LEC0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: S-locus-specific glycoprotein S6 n=1 Tax=Medicago truncatula RepID=G7LEC0_MEDTR	SoyBase	E_val: 3.00E-89	ISS

Expression Patterns of Glyma03g22526

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g22526 not represented in the dataset	Glyma03g22526 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g22526 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g090300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g22526

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g22526

Limit To All Plant Sequences

>Glyma03g22526.1   sequence type=CDS   gene model=Glyma03g22526   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCTCATCAGCTTGCCACATGGCCTTGCTCAATGGTTTTGCTACAAATCTTTGTTGTGGCTCAAACCAGAAGTAACAAAATCATTGGTCACTCTCTTCTTAAAAAAACTAGCAAAGCCTCATGGATGGTTTCACCTCATGGTCAATCAAGAAGAAACATAGTTGTTGGTGATTCTCTTTTAGCCAAAACAACTAGCAACAATAACAACCCCTCATCATGGGTGGTTTCACCTCTTGGTGACTTTGCCTTTGGATTTGTCCTACTTGAGGACACTAATAATTTCTTGGTTTTCATTTGGTATGCTAAGATTCCTGAGAAAATTGTTGTTTGGTATACCAATGGAGAGACTCCTGCTTCAAAGGGGTCAAAGGTTGAACTCACTGCTGATGATGGATTAGTGCTCACTGCCCTAAATGGTGAGCTATTGTGGAAAAATGATAACCATAATGGTAAAGACAATGGCAACTTTGTGCTTGTGGATGAAAACCATCAAGGTGTGTTATGGGAGACTTTAAAGGATCCAAGGGACACCTTGTTGCCCTCACAATCTCTTGAAAAGGGTGAGAAGCTTTCATCGAGATTTCTAGAGTCAAATTTCTCAAAGGGGAGGTTTGAGTTGCTTCTTCAAATGGATGGTATTCTTTCGATTCATGCTTTGAACTCACCCTTTGAGTATGCCAGTGAAAACTACTATGAAACTAGGATTGAAGAGTCCAACACATCGAGTCCTGGAACTCGGTTGGTGTTTGAACCATTAGGGTACGTGTATATTTTGAGGAAGAACAATGAGAGATACAACTTGTCAACATGGAGTAGAGCCTCTACTAATGAATCTTCCTTTAGAGAAACTCTTAATTTTGATGGGATATTCACACTCTATCAACATGCAAAGAGTTCCTCTGAGAGTGATGCTTGGAGTCCTATTTGGTGTTTGTGGTACAAGAAGAAGCATAGAGGAATTAGCAAAAGTGAAAAGGCCCTTGAAACTAATTTGCATTGCTTCAGTTATAAAGAGCTTCAAAGAGCTACCAATGGTTTCCAAAAAGAGCTAGGAAGAGGGTCTTTTGGTGTTGTTTATGAAAGAGTGATAAACATAGGCTCAGCTATTCCAATAGCAGTGAAAAAACTGAACAATTTGCTTTTCCAACAGGTTGAGAAGGAGTTCAAGAATGAGTTACATGTCATTGGTCTCACTCATCACAAGAACTTGGTTCGGTTGATTGGTTATTTGTGA

Predicted protein sequences of Glyma03g22526

Limit To All Plant Sequences

>Glyma03g22526.1   sequence type=predicted peptide   gene model=Glyma03g22526   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSHQLATWPCSMVLLQIFVVAQTRSNKIIGHSLLKKTSKASWMVSPHGQSRRNIVVGDSLLAKTTSNNNNPSSWVVSPLGDFAFGFVLLEDTNNFLVFIWYAKIPEKIVVWYTNGETPASKGSKVELTADDGLVLTALNGELLWKNDNHNGKDNGNFVLVDENHQGVLWETLKDPRDTLLPSQSLEKGEKLSSRFLESNFSKGRFELLLQMDGILSIHALNSPFEYASENYYETRIEESNTSSPGTRLVFEPLGYVYILRKNNERYNLSTWSRASTNESSFRETLNFDGIFTLYQHAKSSSESDAWSPIWCLWYKKKHRGISKSEKALETNLHCFSYKELQRATNGFQKELGRGSFGVVYERVINIGSAIPIAVKKLNNLLFQQVEKEFKNELHVIGLTHHKNLVRLIGYL*

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