SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G17410 | AT | Annotation by Michelle Graham. TAIR10: Spc97 / Spc98 family of spindle pole body (SBP) component | chr5:5730651-5736415 FORWARD LENGTH=678 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000922 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: spindle pole | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005815 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: microtubule organizing center | SoyBase | N/A | ISS |
| KOG2001 | KOG | Gamma-tubulin complex, DGRIP84/SPC97 component | JGI | ISS | |
| PTHR19302 | Panther | GAMMA TUBULIN COMPLEX PROTEIN | JGI | ISS | |
| PTHR19302:SF13 | Panther | gb def: gamma-tubulin ring protein 84 [drosophila melanogaster] | JGI | ISS | |
| PF04130 | PFAM | Spc97 / Spc98 family | JGI | ISS | |
| UniRef100_G7LEC2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Gamma-tubulin complex component n=1 Tax=Medicago truncatula RepID=G7LEC2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337396 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337396 related cluster n=1 Tax=unknown RepID=UPI0002337396 | SoyBase | E_val: 0 | ISS |
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Glyma03g22480 not represented in the dataset |
Glyma03g22480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g09341 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g090100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g22480.2 sequence type=CDS gene model=Glyma03g22480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCCAAACCGCCATTGCCAACTTCGAAAAGCCAATAGGCTGTTACTCTCCATCGGTTCAAGAGCTTATTGTTATTGATAATGTGCTCTCTGCCATGGTTGGCGTTGAGGGACATTACATCTTAATCAAAACAGTTTGTGGCAAGAGCAATGATATTACTTTCCTGGTTGACCCATCAATGGATTTGGCCCTGCAGGAGTTGGCAAAACGGATATTCCCTCTTTGCAAGAGCTTTCTGTTGATCAACCAGTTTGTGGAGTCAAGGTCTCAGTTCCAGAGTGGCCTGGTTAATCATGCCTTTTCTGCTGCACTGAGAGCACTTCTTCTCGATTACCAGGCTATGGTGGCACAGCTCGAACACCAATTTCGGCTAGGAAGACTTTCTCTTCAAGGATTGTGGTTCTATTGTCAGCCCATGATGAGGTCTATGCAGGGATTATCCACTGTCATACAGAGGGCTTCAGTTAACAATATTTCTGGTTCTGCTGTTCTTAACTTACTGCAGAGCCAGGCAAAGGCTATGGCTGGAGACAATGCTGTCAGGATGATGCTGGAGAAAATGGCACAATGTGCGAGTAGTGCTTACATGAGCATACTAGAAAGATGGGTTTACGAAGGTGTAATAGATGATCCTTACGGTGAATTTTTCATCGCAGAGGATAAATCTCTTCAAAAGGAGAGTCTCACTCAAGATTATGAAGCTAAGTATTGGCGACAACGTTACAGCCTCAAAGATGGAATTCCTAGTTTCCTTGCAAATATTGCGGGGACAATTTTGACGACAGGAAAATATCTAAATGTCATGAGAGAATGCGGACATAATGTCCAGGTCCCTCCATCAGAAAATTCAAAACTAATGAGTTTTGGCTCAAATCATCATTATCTTGAATGTATTAAGGCTGCTTATAACTTTGCAAGCGGTGAACTCTTGAATCTCATTAAGGATAAGTATGATCTAACGGGAAGGCTGCGTTCTATAAAACACTACCTTCTTCTTGATCAGGGTGATTTCTTAGTACATTTTATGGATATTGCACGAGATGAACTGGCTAAAAAGCCTGATGAAGTCTCAGTTGAGAAGCTGCAGTCTCTTCTAGACCTTGCATTGCGTACTACAGCAGCTGCAGCAGATCCTTTTCATGAAGGCTTAACCTGTGTTGTGGAAAGATCTTCTCTGCTTAGAAGGTTGGGCACATTTAATGATCTTGAGGTTACTCTGAGAAATTCTGGTGACAATGATCTGGAGGAGCCTGTTAGCATCACTGGTCTTGAAACATTTTCACTAAGTTACAAGGTTCACTGGCCACTGTCTATAGTGTTATCAAGCAAAGCCCTTATAAAGTACCAATTACTTTTTCGATTTCTTTTCCACTGCAAACATGTTGACCGTCAGTTATGTGGAGCATGGCAAGTACATCAAGGAGTTCGTGCTCTCAATACACATGGAACTGCTATCTCCAGATCATCTCTTCTTTGCAGGAGCATGCTTAAATTTATTAATAGCCTTTTGCACTATCTGACATTTGAGGTTATTGAACCCAATTGGCATCTGATGTATAACAAACTTCAGTCAGCAAAAAGCATAGATGAGGTTATACAACATCATGATTTTTTCCTTGATAAATGTTTGAGAGAGTGTTTACTTCTTTTACCTGAGCTGCTGAAGAAGGTGGAGAGGCTTAAATCCATGTGCCTACAATATGCAGCAGCAACTCAATGGCTTATTTCATCTTCTATTGAATTACATAATCCAGTTGAACCTATTGATGATTCAAAAGGCTTGAATAAAGCCAAATGGAAATCAGGTCAGGTCCTGAAGTCAACCACCAGAAATGTGGCAGTCACCGATTCTGTCCTAAAATTTGAGAAAGAGTTTAATACTGAGCTTCAGAGTCTTGGATCAATCTTGAGTAGTAACTCCCAGGCAGAGCCATATCTGTCTCATCTTGCACAATGGCTTCTTGGTGTTAAAAATGTAAAGAATGGTTTATGA
>Glyma03g22480.2 sequence type=predicted peptide gene model=Glyma03g22480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSQTAIANFEKPIGCYSPSVQELIVIDNVLSAMVGVEGHYILIKTVCGKSNDITFLVDPSMDLALQELAKRIFPLCKSFLLINQFVESRSQFQSGLVNHAFSAALRALLLDYQAMVAQLEHQFRLGRLSLQGLWFYCQPMMRSMQGLSTVIQRASVNNISGSAVLNLLQSQAKAMAGDNAVRMMLEKMAQCASSAYMSILERWVYEGVIDDPYGEFFIAEDKSLQKESLTQDYEAKYWRQRYSLKDGIPSFLANIAGTILTTGKYLNVMRECGHNVQVPPSENSKLMSFGSNHHYLECIKAAYNFASGELLNLIKDKYDLTGRLRSIKHYLLLDQGDFLVHFMDIARDELAKKPDEVSVEKLQSLLDLALRTTAAAADPFHEGLTCVVERSSLLRRLGTFNDLEVTLRNSGDNDLEEPVSITGLETFSLSYKVHWPLSIVLSSKALIKYQLLFRFLFHCKHVDRQLCGAWQVHQGVRALNTHGTAISRSSLLCRSMLKFINSLLHYLTFEVIEPNWHLMYNKLQSAKSIDEVIQHHDFFLDKCLRECLLLLPELLKKVERLKSMCLQYAAATQWLISSSIELHNPVEPIDDSKGLNKAKWKSGQVLKSTTRNVAVTDSVLKFEKEFNTELQSLGSILSSNSQAEPYLSHLAQWLLGVKNVKNGL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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