SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G07420 | AT | Annotation by Michelle Graham. TAIR10: asparaginyl-tRNA synthetase 2 | chr3:2374179-2376644 REVERSE LENGTH=638 | SoyBase | E_val: 0 | ISS |
| GO:0006418 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation for protein translation | SoyBase | N/A | ISS |
| GO:0006421 | GO-bp | Annotation by Michelle Graham. GO Biological Process: asparaginyl-tRNA aminoacylation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004812 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0004816 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: asparagine-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| PTHR22594 | Panther | ASPARTYL/LYSYL-TRNA SYNTHETASE | JGI | ISS | |
| PTHR22594:SF6 | Panther | ASPARTYL-TRNA SYNTHETASE | JGI | ISS | |
| PF00152 | PFAM | tRNA synthetases class II (D, K and N) | JGI | ISS | |
| UniRef100_G7LED0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Asparaginyl-tRNA synthetase n=1 Tax=Medicago truncatula RepID=G7LED0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JM92 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JM92_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g22320 not represented in the dataset |
Glyma03g22320 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g09690 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g089300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g22320.2 sequence type=transcript gene model=Glyma03g22320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATAGACTTCTTCCCGCCCAAATTACCGAACACGAAAGAATACCAAACCCAAAAACCAATACAACAACAAAACACAACCTAACACAAAACCTCGTCTTTCTCCGAAACGAAACAATCCCTTTCCTTCTCCCTCAAACCTCAAATCAAAACCCTTCCCAAGCAAAGCATCATTCTCCTCCACTATATCACCACCATGCCTTATCCCTCTCTAACACTCACAACCAAACACAACCTTTTTTCTCACGCTTTTCTTCACAACAACAAAATATGGCAGCAGCAAAAACAACAACAACATCAGCACAACAGACCTCCTCGGCCCCACTCCGCCTTGACGCGCCACGCATTCCACCGCTCGCATACTCGGGCCGGGTCCAGCTCAAGGCGCTGCTGGACCGGCCCGAGTCAGTGGTGGGACGACACGTGATCGTTGGTGGATGGGTGAAGTCTGCTAAGGAGGTCAAGAAGAAGGCGGCGGCGCCTCCATCATTTGCGACGGCGACGGAAGAAACCACCGACGCCGGGGAAGGAGGGAAGGGCAAGGACGTGTCGTGCGTGGAGATTCTGCAGTCGAGGATACCGCTGCTTCGGAGCTTATTGGATGTGTTCGGAGGAGGCGGTTACGTGCAGCGCAAGAAACGTGAGAATGTAATTGTGCCGAATCATAAGGTTTTGCCTCCCAAAGCTTCTACGGCGTATCTGCTTCTAACGGATGGGTCGTGCGTTCCAAGCCTTCAGGTTGTTGTTGATTCTTCAGTAGCCACCCCTAGCAGACTTTTGCCTACTGGAACGTGTCTATTAGTGGAAGGTCAACTAGAAAGAGCAGAAGGGAAGCATGCTATTGAGCTTAAAGCTGAAAAAGTTCTTCACATTGGGACAGTAGATTTTGATAAGTACCCTTTATCAAAGAAGCGAATTCCACTAGATACCTTAAGAGATTACTCCCAATTTCGACCTCGAACAACCACGGTGGCAACTGTGGTGCGGATCCGTAGTTCTCTTTCTTTTGCAACCCACACATTTTTCAATGAGCATGCATTTATTGATGTGCAAGTACCTATTATAACTAGCACAGACTCTGAAGGGTTTAGCAACATGTTGAAGGTTAACACCCTGGAACAGAAAGCAGAGAAGGAGAAACTAGACACAATTTATGAGACTGAAGGTGTTAGCCTTGAACATGTGAAGGCAGCTGCAAAGGAGAAAAGCAACATTATTGAGCATTTGAAAAGAACTGAGAGCAATAGGGAAGCACTGGCTGCTGCAGTTCAGGATCTGAGGAAAACGAATGAACTCGCATCGCAAATGGAAGCAAGAGAAAAGAGAAAGTTAGGAGCTTCTTTTAAGGACGATGACAAAGTAGACTCTTCCAAAGAGTTTTTCCCTTTCCAAACTTATTTGACTGTCTCTGGACGCTTGCATCTCGAGAGTTATGCATGTGCTCTTGGAAATGTCTACTCATTTGGTCCTAGATTTCTAGCAGATAAAACGGATTCTGCTAAACATGCTGCAGAAATGTGGATGGTTGAGGTTGAAATGGCCTTTTCGCTATTAAAGGATTCCATGAATTGTGCAAATGACTTTTTCAAGTACCTCTGCAACTGGGTTCTGATACATTGCTCTGAAGAAATGAAGTTCGTTGCCAAAAGAATCGACAACACCTGCGTGAACCGTCTTCAGCAGATTATATTAGGTTCACCTGTAATGATGACCTACCATGAAGCTATAGATGTTCTTAGAAAGTTGTCCTACCAGGCTGAAGATAAGAAATTTGAAACAAATTTTGAGTCAGGGTTTGCACTCACTTCAGAGCACCTAAGCTATCTAACTGATACCATCTACCAGAAGCCGGTTGTGATATACAATTATCCAAAAGAAGCTAAGCCATTTTATGCTCGCCAGAATGATGATGGAACTGTAGCTGCGTTTGACTTGGTTGTCCCAAAGCTTGGAACAATAATATCTGGTAGCCAAAACGAGGAACGTCTTAACATGATAAGCTCCAGGATTGATGAGTTAGGCTTGCCGCGAGAGAAGTATGAATGGTACCTAGATCTTCGTCGAAACGGAACAGTGAAGAACTCTGGGTTCACTCTAAGGTTTGACCTGATGGTCCTCTTCGCAACTGGCCTTGGCAATGTTAGGGACGTTATCCCTTTCCCAAGAAGCTATGGCAAAGCCAATAACTAAGTAAAAGTTTTGGGCTAAGATTCAAGTTGCATATTCGAGGCTATTGGCATTCAAACTTCCAATATTTGTGGACCTGAGGAAATCATGACACTGTTGTATGCTTGTGTAACAATTTAACATATGAATGGATTACTTGTGTGCCTGATGTATATATGGAAACGTATAATTGAAATGAAATTTATTCAAGTCTTGTGAAGTTCTTTC
>Glyma03g22320.1 sequence type=CDS gene model=Glyma03g22320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCAGCAAAAACAACAACAACATCAGCACAACAGACCTCCTCGGCCCCACTCCGCCTTGACGCGCCACGCATTCCACCGCTCGCATACTCGGGCCGGGTCCAGCTCAAGGCGCTGCTGGACCGGCCCGAGTCAGTGGTGGGACGACACGTGATCGTTGGTGGATGGGTGAAGTCTGCTAAGGAGGTCAAGAAGAAGGCGGCGGCGCCTCCATCATTTGCGACGGCGACGGAAGAAACCACCGACGCCGGGGAAGGAGGGAAGGGCAAGGACGTGTCGTGCGTGGAGATTCTGCAGTCGAGGATACCGCTGCTTCGGAGCTTATTGGATGTGTTCGGAGGAGGCGGTTACGTGCAGCGCAAGAAACGTGAGAATGTAATTGTGCCGAATCATAAGGTTTTGCCTCCCAAAGCTTCTACGGCGTATCTGCTTCTAACGGATGGGTCGTGCGTTCCAAGCCTTCAGGTTGTTGTTGATTCTTCAGTAGCCACCCCTAGCAGACTTTTGCCTACTGGAACGTGTCTATTAGTGGAAGGTCAACTAGAAAGAGCAGAAGGGAAGCATGCTATTGAGCTTAAAGCTGAAAAAGTTCTTCACATTGGGACAGTAGATTTTGATAAGTACCCTTTATCAAAGAAGCGAATTCCACTAGATACCTTAAGAGATTACTCCCAATTTCGACCTCGAACAACCACGGTGGCAACTGTGGTGCGGATCCGTAGTTCTCTTTCTTTTGCAACCCACACATTTTTCAATGAGCATGCATTTATTGATGTGCAAGTACCTATTATAACTAGCACAGACTCTGAAGGGTTTAGCAACATGTTGAAGGTTAACACCCTGGAACAGAAAGCAGAGAAGGAGAAACTAGACACAATTTATGAGACTGAAGGTGTTAGCCTTGAACATGTGAAGGCAGCTGCAAAGGAGAAAAGCAACATTATTGAGCATTTGAAAAGAACTGAGAGCAATAGGGAAGCACTGGCTGCTGCAGTTCAGGATCTGAGGAAAACGAATGAACTCGCATCGCAAATGGAAGCAAGAGAAAAGAGAAAGTTAGGAGCTTCTTTTAAGGACGATGACAAAGTAGACTCTTCCAAAGAGTTTTTCCCTTTCCAAACTTATTTGACTGTCTCTGGACGCTTGCATCTCGAGAGTTATGCATGTGCTCTTGGAAATGTCTACTCATTTGGTCCTAGATTTCTAGCAGATAAAACGGATTCTGCTAAACATGCTGCAGAAATGTGGATGGTTGAGGTTGAAATGGCCTTTTCGCTATTAAAGGATTCCATGAATTGTGCAAATGACTTTTTCAAGTACCTCTGCAACTGGGTTCTGATACATTGCTCTGAAGAAATGAAGTTCGTTGCCAAAAGAATCGACAACACCTGCGTGAACCGTCTTCAGCAGATTATATTAGGTTCACCTGTAATGATGACCTACCATGAAGCTATAGATGTTCTTAGAAAGGCTGAAGATAAGAAATTTGAAACAAATTTTGAGTCAGGGTTTGCACTCACTTCAGAGCACCTAAGCTATCTAACTGATACCATCTACCAGAAGCCGGTTGTGATATACAATTATCCAAAAGAAGCTAAGCCATTTTATGCTCGCCAGAATGATGATGGAACTGTAGCTGCGTTTGACTTGGTTGTCCCAAAGCTTGGAACAATAATATCTGGTAGCCAAAACGAGGAACGTCTTAACATGATAAGCTCCAGGATTGATGAGTTAGGCTTGCCGCGAGAGAAGTATGAATGGTACCTAGATCTTCGTCGAAACGGAACAGTGAAGAACTCTGGGTTCACTCTAAGGTTTGACCTGATGGTCCTCTTCGCAACTGGCCTTGGCAATGTTAGGGACGTTATCCCTTTCCCAAGAAGCTATGGCAAAGCCAATAACTAA >Glyma03g22320.2 sequence type=CDS gene model=Glyma03g22320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCAGCAAAAACAACAACAACATCAGCACAACAGACCTCCTCGGCCCCACTCCGCCTTGACGCGCCACGCATTCCACCGCTCGCATACTCGGGCCGGGTCCAGCTCAAGGCGCTGCTGGACCGGCCCGAGTCAGTGGTGGGACGACACGTGATCGTTGGTGGATGGGTGAAGTCTGCTAAGGAGGTCAAGAAGAAGGCGGCGGCGCCTCCATCATTTGCGACGGCGACGGAAGAAACCACCGACGCCGGGGAAGGAGGGAAGGGCAAGGACGTGTCGTGCGTGGAGATTCTGCAGTCGAGGATACCGCTGCTTCGGAGCTTATTGGATGTGTTCGGAGGAGGCGGTTACGTGCAGCGCAAGAAACGTGAGAATGTAATTGTGCCGAATCATAAGGTTTTGCCTCCCAAAGCTTCTACGGCGTATCTGCTTCTAACGGATGGGTCGTGCGTTCCAAGCCTTCAGGTTGTTGTTGATTCTTCAGTAGCCACCCCTAGCAGACTTTTGCCTACTGGAACGTGTCTATTAGTGGAAGGTCAACTAGAAAGAGCAGAAGGGAAGCATGCTATTGAGCTTAAAGCTGAAAAAGTTCTTCACATTGGGACAGTAGATTTTGATAAGTACCCTTTATCAAAGAAGCGAATTCCACTAGATACCTTAAGAGATTACTCCCAATTTCGACCTCGAACAACCACGGTGGCAACTGTGGTGCGGATCCGTAGTTCTCTTTCTTTTGCAACCCACACATTTTTCAATGAGCATGCATTTATTGATGTGCAAGTACCTATTATAACTAGCACAGACTCTGAAGGGTTTAGCAACATGTTGAAGGTTAACACCCTGGAACAGAAAGCAGAGAAGGAGAAACTAGACACAATTTATGAGACTGAAGGTGTTAGCCTTGAACATGTGAAGGCAGCTGCAAAGGAGAAAAGCAACATTATTGAGCATTTGAAAAGAACTGAGAGCAATAGGGAAGCACTGGCTGCTGCAGTTCAGGATCTGAGGAAAACGAATGAACTCGCATCGCAAATGGAAGCAAGAGAAAAGAGAAAGTTAGGAGCTTCTTTTAAGGACGATGACAAAGTAGACTCTTCCAAAGAGTTTTTCCCTTTCCAAACTTATTTGACTGTCTCTGGACGCTTGCATCTCGAGAGTTATGCATGTGCTCTTGGAAATGTCTACTCATTTGGTCCTAGATTTCTAGCAGATAAAACGGATTCTGCTAAACATGCTGCAGAAATGTGGATGGTTGAGGTTGAAATGGCCTTTTCGCTATTAAAGGATTCCATGAATTGTGCAAATGACTTTTTCAAGTACCTCTGCAACTGGGTTCTGATACATTGCTCTGAAGAAATGAAGTTCGTTGCCAAAAGAATCGACAACACCTGCGTGAACCGTCTTCAGCAGATTATATTAGGTTCACCTGTAATGATGACCTACCATGAAGCTATAGATGTTCTTAGAAAGTTGTCCTACCAGGCTGAAGATAAGAAATTTGAAACAAATTTTGAGTCAGGGTTTGCACTCACTTCAGAGCACCTAAGCTATCTAACTGATACCATCTACCAGAAGCCGGTTGTGATATACAATTATCCAAAAGAAGCTAAGCCATTTTATGCTCGCCAGAATGATGATGGAACTGTAGCTGCGTTTGACTTGGTTGTCCCAAAGCTTGGAACAATAATATCTGGTAGCCAAAACGAGGAACGTCTTAACATGATAAGCTCCAGGATTGATGAGTTAGGCTTGCCGCGAGAGAAGTATGAATGGTACCTAGATCTTCGTCGAAACGGAACAGTGAAGAACTCTGGGTTCACTCTAAGGTTTGACCTGATGGTCCTCTTCGCAACTGGCCTTGGCAATGTTAGGGACGTTATCCCTTTCCCAAGAAGCTATGGCAAAGCCAATAACTAA
>Glyma03g22320.1 sequence type=predicted peptide gene model=Glyma03g22320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAAKTTTTSAQQTSSAPLRLDAPRIPPLAYSGRVQLKALLDRPESVVGRHVIVGGWVKSAKEVKKKAAAPPSFATATEETTDAGEGGKGKDVSCVEILQSRIPLLRSLLDVFGGGGYVQRKKRENVIVPNHKVLPPKASTAYLLLTDGSCVPSLQVVVDSSVATPSRLLPTGTCLLVEGQLERAEGKHAIELKAEKVLHIGTVDFDKYPLSKKRIPLDTLRDYSQFRPRTTTVATVVRIRSSLSFATHTFFNEHAFIDVQVPIITSTDSEGFSNMLKVNTLEQKAEKEKLDTIYETEGVSLEHVKAAAKEKSNIIEHLKRTESNREALAAAVQDLRKTNELASQMEAREKRKLGASFKDDDKVDSSKEFFPFQTYLTVSGRLHLESYACALGNVYSFGPRFLADKTDSAKHAAEMWMVEVEMAFSLLKDSMNCANDFFKYLCNWVLIHCSEEMKFVAKRIDNTCVNRLQQIILGSPVMMTYHEAIDVLRKAEDKKFETNFESGFALTSEHLSYLTDTIYQKPVVIYNYPKEAKPFYARQNDDGTVAAFDLVVPKLGTIISGSQNEERLNMISSRIDELGLPREKYEWYLDLRRNGTVKNSGFTLRFDLMVLFATGLGNVRDVIPFPRSYGKANN* >Glyma03g22320.2 sequence type=predicted peptide gene model=Glyma03g22320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAAKTTTTSAQQTSSAPLRLDAPRIPPLAYSGRVQLKALLDRPESVVGRHVIVGGWVKSAKEVKKKAAAPPSFATATEETTDAGEGGKGKDVSCVEILQSRIPLLRSLLDVFGGGGYVQRKKRENVIVPNHKVLPPKASTAYLLLTDGSCVPSLQVVVDSSVATPSRLLPTGTCLLVEGQLERAEGKHAIELKAEKVLHIGTVDFDKYPLSKKRIPLDTLRDYSQFRPRTTTVATVVRIRSSLSFATHTFFNEHAFIDVQVPIITSTDSEGFSNMLKVNTLEQKAEKEKLDTIYETEGVSLEHVKAAAKEKSNIIEHLKRTESNREALAAAVQDLRKTNELASQMEAREKRKLGASFKDDDKVDSSKEFFPFQTYLTVSGRLHLESYACALGNVYSFGPRFLADKTDSAKHAAEMWMVEVEMAFSLLKDSMNCANDFFKYLCNWVLIHCSEEMKFVAKRIDNTCVNRLQQIILGSPVMMTYHEAIDVLRKLSYQAEDKKFETNFESGFALTSEHLSYLTDTIYQKPVVIYNYPKEAKPFYARQNDDGTVAAFDLVVPKLGTIISGSQNEERLNMISSRIDELGLPREKYEWYLDLRRNGTVKNSGFTLRFDLMVLFATGLGNVRDVIPFPRSYGKANN*
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