Glyma03g22300 - SoyBase

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Report for Sequence Feature Glyma03g22300

Feature Type:	gene_model
Chromosome:	Gm03
Start:	28540720
stop:	28544069
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g22300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G56640	AT	Annotation by Michelle Graham. TAIR10: exocyst complex component sec15A \| chr3:20981964-20984336 FORWARD LENGTH=790	SoyBase	E_val: 0	ISS
GO:0006904	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle docking involved in exocytosis	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009846	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen germination	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0000145	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: exocyst	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
KOG2176	KOG	Exocyst complex, subunit SEC15	JGI		ISS
PTHR12702	Panther	SEC15	JGI		ISS
PF04091	PFAM	Exocyst complex subunit Sec15-like	JGI		ISS
UniRef100_B9SJM9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sec15, putative n=1 Tax=Ricinus communis RepID=B9SJM9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002336D6F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336D6F related cluster n=1 Tax=unknown RepID=UPI0002336D6F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g22300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g22300 not represented in the dataset	Glyma03g22300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g22300

Paralog	Evidence	Comments
Glyma16g09730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g22300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g089100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g22300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g22300

Limit To All Plant Sequences

>Glyma03g22300.3   sequence type=transcript   gene model=Glyma03g22300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTACGTATGCTATTGCTAACACGTAAACCCAAACCTGCCTGTGTGTGTCTGTGACCAAGAAGGAAATAGCCTCAGCCTCTGATTTCTCGCCGTCACCTACCTTAACACGGATTCAAGTGACAATGGATGTCAAAACAAAAAGGAGAGCTCATGTAGAGAATGGCGACGAAGGAGAAGACTTAGTTCTAGCTACTCTGGTTGCCAATGGTGATGACATTAGTCCTCTTGTCAGGCACGCCTTCGAAATGGGGCGGCCGGAGGGCCTCCTACGCCAGCTCGATTTTGTGGTGAAGAAAAAGGAAGCTGAAATCGAGGCAATGTGCAAGACTCACTATGAGGAATTCATCCTTGCAGTTGATGAACTTCGAGGCGTGTTAGTTGATGCTGAAGAGCTCAAGAGTGAGCTCCAAAGTGATAATTTTAAGTTGCAGCAGGTTGGAACTACCCTTCTTATCAAGCTTGAGGAGCTTCTTGAATCGTATACCATCAAGAAGAATGTGACCGAAGCTATAAAAATGTCAAAGAACTGTATAAAAGTGTTGGAGCTTTGTGTCAAGTGCAACAATCACATTTCTGAAGGCCAGTTTTATCCTGCACTGAAAACTGTGGATTTACTTGAGAAATGTTACATTCAGAATATTCCTGCCAGGGCTCTCAAAAAGGTGATAGAGAAAAAAATACCTTCCATAAAATTGCACATTGAGAAGAAAGTATGCAGTCAAGTTAATGAATGGATGGTCCAAATAAGGAGTTCTTGTAAAAAAATTGGGCAAACGGCGATTGGTCGTGCTGCACAAGTTCGCCAGAGGGATGAGGAAATGCTGGAAAGGAAAAGAAAGGCTGAGGGATTAAACATTTCAGAAGTTGATGATCAAGCTTATAATTTGGTGGTTGAAGAAGATGAGGATTCTGCCATGAAATTCGATCTCACACCTCTTTATCGCGCTTGTCATATTCATAGTTGCCTGGGGATCCTGGAGCAGTTTCATGACTATTACTATAAGAACAGATTGTTACAATTAAATTCAGATTTGGAGATATCTTCAGCTCAACCTTTTGTAGAATCACATCAGACATTTTTGGCTCAAATTGCAGGGTACTTCATAGTGGAGGATAAGGTCCTGAGGACTGCTGGTGGGCTCCTTGTACCTGATAAGGTTGAAACTATGTGGGAGACTGCTTTAGCAAAAGTAACATCAATGTTGGACATGCAATTCTCTCATATGAACTCTGCCACACATCTTCTCCTAGTTAAGGATTATGTTACACTTCTTGCCTCTACTCTTAGACAATATGGATATGACATTGGCCAACTTCTTGATGTGCTTGATAATAGCCGCGATAAATACCATAGGCTTCTTTTGCAAGAATGTCAGAAACAAATTGTTGATGTTCTTGGCAAAGACTCATATGAGCAAATGGTGATAAAAAAGGATACTGATTATGAGAATAATGTTCTGTCATTTAATATTCAAACATCAGATATTATGCCTGCTTTTCCATATGTTGCACCATTCTCCTCGATGGTACCCGATGCTTGTCGCATTGTGAGATCCTTCATCAAAGGCTCTGTTGATTACTTGTCTAATGGTGTACGTACCGGTTTCTTTGATTTTGTGAGGAAGTATTTGGATAAGTTCCTGATAGAAGTATTAAATGAAACTTTACTTGATACAATCAATAGTGGAAATATCAGTGTGTCTCAAGCAATGCAGCTTGCTGCCAACATAACTGTTCTTGAAAGAGCCTGTGACTTTTTCCTTCGACATGCTTCTCAACAGTGTTGCATCTCAGTTCGATCAGTTGAGAAGCCTCAAGCTACTTTAACCGCGAAGGTGCTACTCAAGACTTCGAGGGATGCGGTTTATATTACTCTACTGAGTTTGGTGAACACAAAATTAGATGAGTATATGAATCTTGTAGAAAGTATCAACTGGACTTCTGAGGAGGCAAAGCCAAATGGAAATGACTACATAAATGAAGTGATCTTTTACCTTGATTCACTAATGTCTACAGCGCAACAAATTTTACCCCTAGATGCTATGTACAAGGTTGGGACAAGTGCAATTGAACATATTTCCAATACAATTGTGGCTGCTTTCCTTAGTGATAATGTCAAAAGGTTTAATGCAAATGCAGTTATGAATTTCAACAATGATCTTAGGATGTTGGAGAGTTTTGCGGATGAGAAGTTCCATTGTTCTGGCTTGGCTGAATTTTACTCTGGAGCTAGTTTTAAGAGCTGTATGATAGAAGCACGACAATTAATGAATCTTCTGTCAAGTAGTCAGCCTGAGAACTTCATGAATCCTGTTATAAGGGAGAAAAACTACTATGCGTTGGATTATAAGATGGTAGGCTCCATTTGTGATAAATTCAAGGATTCTCCAGATGGGATATTTGGAAGTCTTTCAAATAAAAACACAAAGCAAAGTGCTAAAAAGAAATCAATGGACATGCTCAAAAAGCGACTTAAGGATTTCAATTGA

Coding sequences of Glyma03g22300

Limit To All Plant Sequences

>Glyma03g22300.2   sequence type=CDS   gene model=Glyma03g22300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTCAAAACAAAAAGGAGAGCTCATGTAGAGAATGGCGACGAAGGAGAAGACTTAGTTCTAGCTACTCTGGTTGCCAATGGTGATGACATTAGTCCTCTTGTCAGGCACGCCTTCGAAATGGGGCGGCCGGAGGGCCTCCTACGCCAGCTCGATTTTGTGGTGAAGAAAAAGGAAGCTGAAATCGAGGCAATGTGCAAGACTCACTATGAGGAATTCATCCTTGCAGTTGATGAACTTCGAGGCGTGTTAGTTGATGCTGAAGAGCTCAAGAGTGAGCTCCAAAGTGATAATTTTAAGTTGCAGCAGGTTGGAACTACCCTTCTTATCAAGCTTGAGGAGCTTCTTGAATCGTATACCATCAAGAAGAATGTGACCGAAGCTATAAAAATGTCAAAGAACTGTATAAAAGTGTTGGAGCTTTGTGTCAAGTGCAACAATCACATTTCTGAAGGCCAGTTTTATCCTGCACTGAAAACTGTGGATTTACTTGAGAAATGTTACATTCAGAATATTCCTGCCAGGGCTCTCAAAAAGGTGATAGAGAAAAAAATACCTTCCATAAAATTGCACATTGAGAAGAAAGTATGCAGTCAAGTTAATGAATGGATGGTCCAAATAAGGAGTTCTTGTAAAAAAATTGGGCAAACGGCGATTGGTCGTGCTGCACAAGTTCGCCAGAGGGATGAGGAAATGCTGGAAAGGAAAAGAAAGGCTGAGGGATTAAACATTTCAGAAGTTGATGATCAAGCTTATAATTTGGTGGTTGAAGAAGATGAGGATTCTGCCATGAAATTCGATCTCACACCTCTTTATCGCGCTTGTCATATTCATAGTTGCCTGGGGATCCTGGAGCAGTTTCATGACTATTACTATAAGAACAGATTGTTACAATTAAATTCAGATTTGGAGATATCTTCAGCTCAACCTTTTGTAGAATCACATCAGACATTTTTGGCTCAAATTGCAGGGTACTTCATAGTGGAGGATAAGGTCCTGAGGACTGCTGGTGGGCTCCTTGTACCTGATAAGGTTGAAACTATGTGGGAGACTGCTTTAGCAAAAGTAACATCAATGTTGGACATGCAATTCTCTCATATGAACTCTGCCACACATCTTCTCCTAGTTAAGGATTATGTTACACTTCTTGCCTCTACTCTTAGACAATATGGATATGACATTGGCCAACTTCTTGATGTGCTTGATAATAGCCGCGATAAATACCATAGGCTTCTTTTGCAAGAATGTCAGAAACAAATTGTTGATGTTCTTGGCAAAGACTCATATGAGCAAATGGTGATAAAAAAGGATACTGATTATGAGAATAATGTTCTGTCATTTAATATTCAAACATCAGATATTATGCCTGCTTTTCCATATGTTGCACCATTCTCCTCGATGGTACCCGATGCTTGTCGCATTGTGAGATCCTTCATCAAAGGCTCTGTTGATTACTTGTCTAATGGTGTACGTACCGGTTTCTTTGATTTTGTGAGGAAGTATTTGGATAAGTTCCTGATAGAAGTATTAAATGAAACTTTACTTGATACAATCAATAGTGGAAATATCAGTGTGTCTCAAGCAATGCAGCTTGCTGCCAACATAACTGTTCTTGAAAGAGCCTGTGACTTTTTCCTTCGACATGCTTCTCAACAGTGTTGCATCTCAGTTCGATCAGTTGAGAAGCCTCAAGCTACTTTAACCGCGAAGGTGCTACTCAAGACTTCGAGGGATGCGGTTTATATTACTCTACTGAGTTTGGTGAACACAAAATTAGATGAGTATATGAATCTTGTAGAAAGTATCAACTGGACTTCTGAGGAGGCAAAGCCAAATGGAAATGACTACATAAATGAAGTGATCTTTTACCTTGATTCACTAATGTCTACAGCGCAACAAATTTTACCCCTAGATGCTATGTACAAGGTTGGGACAAGTGCAATTGAACATATTTCCAATACAATTGTGGCTGCTTTCCTTAGTGATAATGTCAAAAGGTTTAATGCAAATGCAGTTATGAATTTCAACAATGATCTTAGGATGTTGGAGAGTTTTGCGGATGAGAAGTTCCATTGTTCTGGCTTGGCTGAATTTTACTCTGGAGCTAGTTTTAAGAGCTGTATGATAGAAGCACGACAATTAATGAATCTTCTGTCAAGTAGTCAGCCTGAGAACTTCATGAATCCTGTTATAAGGGAGAAAAACTACTATGCGTTGGATTATAAGATGGTAGGCTCCATTTGTGATAAATTCAAGGATTCTCCAGATGGGATATTTGGAAGTCTTTCAAATAAAAACACAAAGCAAAGTGCTAAAAAGAAATCAATGGACATGCTCAAAAAGCGACTTAAGGATTTCAATTGA

>Glyma03g22300.3   sequence type=CDS   gene model=Glyma03g22300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTCAAAACAAAAAGGAGAGCTCATGTAGAGAATGGCGACGAAGGAGAAGACTTAGTTCTAGCTACTCTGGTTGCCAATGGTGATGACATTAGTCCTCTTGTCAGGCACGCCTTCGAAATGGGGCGGCCGGAGGGCCTCCTACGCCAGCTCGATTTTGTGGTGAAGAAAAAGGAAGCTGAAATCGAGGCAATGTGCAAGACTCACTATGAGGAATTCATCCTTGCAGTTGATGAACTTCGAGGCGTGTTAGTTGATGCTGAAGAGCTCAAGAGTGAGCTCCAAAGTGATAATTTTAAGTTGCAGCAGGTTGGAACTACCCTTCTTATCAAGCTTGAGGAGCTTCTTGAATCGTATACCATCAAGAAGAATGTGACCGAAGCTATAAAAATGTCAAAGAACTGTATAAAAGTGTTGGAGCTTTGTGTCAAGTGCAACAATCACATTTCTGAAGGCCAGTTTTATCCTGCACTGAAAACTGTGGATTTACTTGAGAAATGTTACATTCAGAATATTCCTGCCAGGGCTCTCAAAAAGGTGATAGAGAAAAAAATACCTTCCATAAAATTGCACATTGAGAAGAAAGTATGCAGTCAAGTTAATGAATGGATGGTCCAAATAAGGAGTTCTTGTAAAAAAATTGGGCAAACGGCGATTGGTCGTGCTGCACAAGTTCGCCAGAGGGATGAGGAAATGCTGGAAAGGAAAAGAAAGGCTGAGGGATTAAACATTTCAGAAGTTGATGATCAAGCTTATAATTTGGTGGTTGAAGAAGATGAGGATTCTGCCATGAAATTCGATCTCACACCTCTTTATCGCGCTTGTCATATTCATAGTTGCCTGGGGATCCTGGAGCAGTTTCATGACTATTACTATAAGAACAGATTGTTACAATTAAATTCAGATTTGGAGATATCTTCAGCTCAACCTTTTGTAGAATCACATCAGACATTTTTGGCTCAAATTGCAGGGTACTTCATAGTGGAGGATAAGGTCCTGAGGACTGCTGGTGGGCTCCTTGTACCTGATAAGGTTGAAACTATGTGGGAGACTGCTTTAGCAAAAGTAACATCAATGTTGGACATGCAATTCTCTCATATGAACTCTGCCACACATCTTCTCCTAGTTAAGGATTATGTTACACTTCTTGCCTCTACTCTTAGACAATATGGATATGACATTGGCCAACTTCTTGATGTGCTTGATAATAGCCGCGATAAATACCATAGGCTTCTTTTGCAAGAATGTCAGAAACAAATTGTTGATGTTCTTGGCAAAGACTCATATGAGCAAATGGTGATAAAAAAGGATACTGATTATGAGAATAATGTTCTGTCATTTAATATTCAAACATCAGATATTATGCCTGCTTTTCCATATGTTGCACCATTCTCCTCGATGGTACCCGATGCTTGTCGCATTGTGAGATCCTTCATCAAAGGCTCTGTTGATTACTTGTCTAATGGTGTACGTACCGGTTTCTTTGATTTTGTGAGGAAGTATTTGGATAAGTTCCTGATAGAAGTATTAAATGAAACTTTACTTGATACAATCAATAGTGGAAATATCAGTGTGTCTCAAGCAATGCAGCTTGCTGCCAACATAACTGTTCTTGAAAGAGCCTGTGACTTTTTCCTTCGACATGCTTCTCAACAGTGTTGCATCTCAGTTCGATCAGTTGAGAAGCCTCAAGCTACTTTAACCGCGAAGGTGCTACTCAAGACTTCGAGGGATGCGGTTTATATTACTCTACTGAGTTTGGTGAACACAAAATTAGATGAGTATATGAATCTTGTAGAAAGTATCAACTGGACTTCTGAGGAGGCAAAGCCAAATGGAAATGACTACATAAATGAAGTGATCTTTTACCTTGATTCACTAATGTCTACAGCGCAACAAATTTTACCCCTAGATGCTATGTACAAGGTTGGGACAAGTGCAATTGAACATATTTCCAATACAATTGTGGCTGCTTTCCTTAGTGATAATGTCAAAAGGTTTAATGCAAATGCAGTTATGAATTTCAACAATGATCTTAGGATGTTGGAGAGTTTTGCGGATGAGAAGTTCCATTGTTCTGGCTTGGCTGAATTTTACTCTGGAGCTAGTTTTAAGAGCTGTATGATAGAAGCACGACAATTAATGAATCTTCTGTCAAGTAGTCAGCCTGAGAACTTCATGAATCCTGTTATAAGGGAGAAAAACTACTATGCGTTGGATTATAAGATGGTAGGCTCCATTTGTGATAAATTCAAGGATTCTCCAGATGGGATATTTGGAAGTCTTTCAAATAAAAACACAAAGCAAAGTGCTAAAAAGAAATCAATGGACATGCTCAAAAAGCGACTTAAGGATTTCAATTGA

Predicted protein sequences of Glyma03g22300

Limit To All Plant Sequences

>Glyma03g22300.2   sequence type=predicted peptide   gene model=Glyma03g22300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVKTKRRAHVENGDEGEDLVLATLVANGDDISPLVRHAFEMGRPEGLLRQLDFVVKKKEAEIEAMCKTHYEEFILAVDELRGVLVDAEELKSELQSDNFKLQQVGTTLLIKLEELLESYTIKKNVTEAIKMSKNCIKVLELCVKCNNHISEGQFYPALKTVDLLEKCYIQNIPARALKKVIEKKIPSIKLHIEKKVCSQVNEWMVQIRSSCKKIGQTAIGRAAQVRQRDEEMLERKRKAEGLNISEVDDQAYNLVVEEDEDSAMKFDLTPLYRACHIHSCLGILEQFHDYYYKNRLLQLNSDLEISSAQPFVESHQTFLAQIAGYFIVEDKVLRTAGGLLVPDKVETMWETALAKVTSMLDMQFSHMNSATHLLLVKDYVTLLASTLRQYGYDIGQLLDVLDNSRDKYHRLLLQECQKQIVDVLGKDSYEQMVIKKDTDYENNVLSFNIQTSDIMPAFPYVAPFSSMVPDACRIVRSFIKGSVDYLSNGVRTGFFDFVRKYLDKFLIEVLNETLLDTINSGNISVSQAMQLAANITVLERACDFFLRHASQQCCISVRSVEKPQATLTAKVLLKTSRDAVYITLLSLVNTKLDEYMNLVESINWTSEEAKPNGNDYINEVIFYLDSLMSTAQQILPLDAMYKVGTSAIEHISNTIVAAFLSDNVKRFNANAVMNFNNDLRMLESFADEKFHCSGLAEFYSGASFKSCMIEARQLMNLLSSSQPENFMNPVIREKNYYALDYKMVGSICDKFKDSPDGIFGSLSNKNTKQSAKKKSMDMLKKRLKDFN*

>Glyma03g22300.3   sequence type=predicted peptide   gene model=Glyma03g22300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVKTKRRAHVENGDEGEDLVLATLVANGDDISPLVRHAFEMGRPEGLLRQLDFVVKKKEAEIEAMCKTHYEEFILAVDELRGVLVDAEELKSELQSDNFKLQQVGTTLLIKLEELLESYTIKKNVTEAIKMSKNCIKVLELCVKCNNHISEGQFYPALKTVDLLEKCYIQNIPARALKKVIEKKIPSIKLHIEKKVCSQVNEWMVQIRSSCKKIGQTAIGRAAQVRQRDEEMLERKRKAEGLNISEVDDQAYNLVVEEDEDSAMKFDLTPLYRACHIHSCLGILEQFHDYYYKNRLLQLNSDLEISSAQPFVESHQTFLAQIAGYFIVEDKVLRTAGGLLVPDKVETMWETALAKVTSMLDMQFSHMNSATHLLLVKDYVTLLASTLRQYGYDIGQLLDVLDNSRDKYHRLLLQECQKQIVDVLGKDSYEQMVIKKDTDYENNVLSFNIQTSDIMPAFPYVAPFSSMVPDACRIVRSFIKGSVDYLSNGVRTGFFDFVRKYLDKFLIEVLNETLLDTINSGNISVSQAMQLAANITVLERACDFFLRHASQQCCISVRSVEKPQATLTAKVLLKTSRDAVYITLLSLVNTKLDEYMNLVESINWTSEEAKPNGNDYINEVIFYLDSLMSTAQQILPLDAMYKVGTSAIEHISNTIVAAFLSDNVKRFNANAVMNFNNDLRMLESFADEKFHCSGLAEFYSGASFKSCMIEARQLMNLLSSSQPENFMNPVIREKNYYALDYKMVGSICDKFKDSPDGIFGSLSNKNTKQSAKKKSMDMLKKRLKDFN*

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