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Report for Sequence Feature Glyma03g22210

Feature Type:gene_model
Chromosome:Gm03
Start:28223177
stop:28230213
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g22210
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07370AT Annotation by Michelle Graham. TAIR10: carboxyl terminus of HSC70-interacting protein | chr3:2358323-2360301 REVERSE LENGTH=278 SoyBaseE_val: 3.00E-143ISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009610GO-bp Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0000151GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0051087GO-mf Annotation by Michelle Graham. GO Molecular Function: chaperone binding SoyBaseN/AISS
KOG4642 KOG Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) JGI ISS
PTHR22904Panther CHAPERONE BINDING PROTEIN JGI ISS
PTHR22904:SF177Panther JGI ISS
PF00515PFAM Tetratricopeptide repeat JGI ISS
PF04564PFAM U-box domain JGI ISS
UniRef100_G7LEE6UniRef Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase CHIP n=1 Tax=Medicago truncatula RepID=G7LEE6_MEDTR SoyBaseE_val: 4.00E-170ISS
UniRef100_I1JM84UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JM84_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g22210
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g22210 not represented in the dataset
Glyma03g22210 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g22210
ParalogEvidenceComments
Glyma16g09930 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g22210 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g088400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g22210
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma03g22210
>Glyma03g22210.2   sequence type=transcript   gene model=Glyma03g22210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACAAACATGACAAAGTAGCCCGAGTCAGTCAACAATAACTTCCCCAGCACGTTGTGTTACCCTCTTTCATCTTCGTCGTTTTCATACTCCTTCTTCCTTCAAATTCTAGAAAAATGCCCCTTCAACCTCCGTAACTTACCGATCCATAAATACACACACATAACCATTTTCATTCAACATTTTTATTTTTTATTTTTTTGTATCCGTGTAATATCCACACATTTTCATTTTTCACATTAAATTAGGTGAATACACGCATTATTATTTTTTATGTACCCATTCGCGTGCGATAGAATTTTCTAGAGCAAGAGATTTCGGCGTAATGGGTCCAAACGCTGCGGCGGCGAAACAAGCGGAAAAGCTCCGAATTGACGGCAACACTTACTTCAAAAAAGACCGTTTCGGTGCCGCCATCGACGCTTACACCGAGGCGATTACGCTGTGCCCTAATGTTCCGGTTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAATGATTGGGAGAGAGTAGAGGAAGATTCTCGGAAGGCAATTCAGTTGGACAGCAATTCAGCCCACTATATATTGGGGCTCGCATTGCTTCAGAGACAAGAATCTGTCAAGGGAATCAAAGAATTGGAGAAGGCTTTGGATCTTGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCAAAATACCTTGAGTGGGAACGATTATCGTCCAAACGATCATGGGAATTGCAGTGCTTGAAAGAAGCTTGTGAGTCTGCTCTGAAGGAAAAACATTTTCTGGATTTCTCTCAAATGGAAGGATTTGTAGATGATGCTACTACTTCCCAGTCAGAACAATTAGAGGCTTTAGAAAGAGTCTTCAATACAGCTGCAGAAGCTGACACACCTACTGAGGTGCCAGATTATTTGTGCTGTAGAATTACACTCGACATTTTCCATGATCCTGTAATCACTCCAAGTGGACTTACATATGAGAGAGCAGTGATTCTTGAGCATCTTCAGAAGGTGGGTAAATTCGACCCAATCACACGGGAACCCCTTGATCCATCACAGTTAGTGCCAAACTTGGCCATTAAGGAAGCGGTCGAGGCATTCTTGGACAAACATGGATGGGCCTACAAGATAGAATAACGGAAGATTAAGTTGCAAATTAACAATGCGTGGTAGGTTTTGTATGTTGAGCAATGCTGCAGGATGTTGTGTTCTGCAAGCGTGGCCATAGTTGTATGCTTTAATTGTTAATTATGTATTCAGTTTCCTGGGGTCCTGACTTCTCAACATCTTATTATGAAGTGTATATATGGTTGATTGTCGTATGCTGTGTAAATATAGTAGTGTATACATATCAATGACTGCTGAGACTTATTTCATTTGTCTCATCAAATCAAAAATATTAAACCCGTCATAAGGTTTTTTTTGGCATTT
Coding sequences of Glyma03g22210
>Glyma03g22210.1   sequence type=CDS   gene model=Glyma03g22210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCCAAACGCTGCGGCGGCGAAACAAGCGGAAAAGCTCCGAATTGACGGCAACACTTACTTCAAAAAAGACCGTTTCGGTGCCGCCATCGACGCTTACACCGAGGCGATTACGCTGTGCCCTAATGTTCCGGTTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAATGATTGGGAGAGAGTAGAGGAAGATTCTCGGAAGGCAATTCAGTTGGACAGCAATTCAGTTAAGGCCCACTATATATTGGGGCTCGCATTGCTTCAGAGACAAGAATCTGTCAAGGGAATCAAAGAATTGGAGAAGGCTTTGGATCTTGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCAAAATACCTTGAGTGGGAACGATTATCGTCCAAACGATCATGGGAATTGCAGTGCTTGAAAGAAGCTTGTGAGTCTGCTCTGAAGGAAAAACATTTTCTGGATTTCTCTCAAATGGAAGGATTTGTAGATGATGCTACTACTTCCCAGTCAGAACAATTAGAGGCTTTAGAAAGAGTCTTCAATACAGCTGCAGAAGCTGACACACCTACTGAGGTGCCAGATTATTTGTGCTGTAGAATTACACTCGACATTTTCCATGATCCTGTAATCACTCCAAGTGGACTTACATATGAGAGAGCAGTGATTCTTGAGCATCTTCAGAAGGTGGGTAAATTCGACCCAATCACACGGGAACCCCTTGATCCATCACAGTTAGTGCCAAACTTGGCCATTAAGGAAGCGGTCGAGGCATTCTTGGACAAACATGGATGGGCCTACAAGATAGAATAA

>Glyma03g22210.2   sequence type=CDS   gene model=Glyma03g22210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCCAAACGCTGCGGCGGCGAAACAAGCGGAAAAGCTCCGAATTGACGGCAACACTTACTTCAAAAAAGACCGTTTCGGTGCCGCCATCGACGCTTACACCGAGGCGATTACGCTGTGCCCTAATGTTCCGGTTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAATGATTGGGAGAGAGTAGAGGAAGATTCTCGGAAGGCAATTCAGTTGGACAGCAATTCAGCCCACTATATATTGGGGCTCGCATTGCTTCAGAGACAAGAATCTGTCAAGGGAATCAAAGAATTGGAGAAGGCTTTGGATCTTGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCAAAATACCTTGAGTGGGAACGATTATCGTCCAAACGATCATGGGAATTGCAGTGCTTGAAAGAAGCTTGTGAGTCTGCTCTGAAGGAAAAACATTTTCTGGATTTCTCTCAAATGGAAGGATTTGTAGATGATGCTACTACTTCCCAGTCAGAACAATTAGAGGCTTTAGAAAGAGTCTTCAATACAGCTGCAGAAGCTGACACACCTACTGAGGTGCCAGATTATTTGTGCTGTAGAATTACACTCGACATTTTCCATGATCCTGTAATCACTCCAAGTGGACTTACATATGAGAGAGCAGTGATTCTTGAGCATCTTCAGAAGGTGGGTAAATTCGACCCAATCACACGGGAACCCCTTGATCCATCACAGTTAGTGCCAAACTTGGCCATTAAGGAAGCGGTCGAGGCATTCTTGGACAAACATGGATGGGCCTACAAGATAGAATAA
Predicted protein sequences of Glyma03g22210
>Glyma03g22210.1   sequence type=predicted peptide   gene model=Glyma03g22210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPNAAAAKQAEKLRIDGNTYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHLKRNDWERVEEDSRKAIQLDSNSVKAHYILGLALLQRQESVKGIKELEKALDLGRGANPKGYMVEEIWQELAKAKYLEWERLSSKRSWELQCLKEACESALKEKHFLDFSQMEGFVDDATTSQSEQLEALERVFNTAAEADTPTEVPDYLCCRITLDIFHDPVITPSGLTYERAVILEHLQKVGKFDPITREPLDPSQLVPNLAIKEAVEAFLDKHGWAYKIE*

>Glyma03g22210.2   sequence type=predicted peptide   gene model=Glyma03g22210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPNAAAAKQAEKLRIDGNTYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHLKRNDWERVEEDSRKAIQLDSNSAHYILGLALLQRQESVKGIKELEKALDLGRGANPKGYMVEEIWQELAKAKYLEWERLSSKRSWELQCLKEACESALKEKHFLDFSQMEGFVDDATTSQSEQLEALERVFNTAAEADTPTEVPDYLCCRITLDIFHDPVITPSGLTYERAVILEHLQKVGKFDPITREPLDPSQLVPNLAIKEAVEAFLDKHGWAYKIE*






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