Glyma03g21710 - SoyBase

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Report for Sequence Feature Glyma03g21710

Feature Type:	gene_model
Chromosome:	Gm03
Start:	27538261
stop:	27540987
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g21710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G59240	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein S8e family protein \| chr5:23902626-23903670 REVERSE LENGTH=210	SoyBase	E_val: 3.00E-124	ISS
GO:0000462	GO-bp	Annotation by Michelle Graham. GO Biological Process: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0006414	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational elongation	SoyBase	N/A	ISS
GO:0009165	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0042991	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription factor import into nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0022627	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG3283	KOG	40S ribosomal protein S8	JGI		ISS
PTHR10394	Panther	40S RIBOSOMAL PROTEIN S8	JGI		ISS
PF01201	PFAM	Ribosomal protein S8e	JGI		ISS
UniRef100_I1JM69	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S8 n=2 Tax=Glycine max RepID=I1JM69_SOYBN	SoyBase	E_val: 1.00E-157	ISS
UniRef100_I1JM69	UniRef	Annotation by Michelle Graham. Best UniRef hit: 40S ribosomal protein S8 n=2 Tax=Glycine max RepID=I1JM69_SOYBN	SoyBase	E_val: 1.00E-157	ISS

Expression Patterns of Glyma03g21710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g21710 not represented in the dataset	Glyma03g21710 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g21710

Paralog	Evidence	Comments
Glyma16g10700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g21710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g086400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g21710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g21710

Limit To All Plant Sequences

>Glyma03g21710.2   sequence type=transcript   gene model=Glyma03g21710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCCGGGTAAGCGAAGCCGGATCAGTAAGTAGGGTTTCGTCTGTTGAAATATATAATCCGTAATATTAGGGTTTTAAGAGAGGGCGAGGAAGCCACATAGAGACACAATACAGAGTGAGTTGTTGCTCCTTCGCCACAACTCTCTGCCAACATGGGTATCTCCAGAGATTCTATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGGCCTGGAGGAAAAAGAGAAAGTATGAGCTTGGTCGCCAGCCTGCTAACACTAAGCTGTCAAGCAACAAGACAGTCAGGAGGATCCGTGTTAGAGGTGGAAATGTGAAATGGAGGGCATTGAGATTGGATACTGGAAATTACTCCTGGGGAAGTGAAGCTGTAACTCGCAAGACTCGTGTACTAGATGTGGTTTACAATGCCTCAAACAATGAGCTTGTGCGTACTCAGACTCTTGTCAAAAGTGCTATCGTTCAGGTTGATGCTGCTCCATTCAAACAGTGGTATCTTCAGCACTATGGTGTTGAGATTGGTAGGAAAAAGAAGACAGCTGCCAAGAAGGAAACTGCAGAGGAGGGTGGTGATGCTGCTGCAGCTGCAGAAGAAGCCAAAAAGAGTAACCATGTGCAGAGAAAATTGGAGAAGCGCCAGAAAGATCGAAAGCTTGATGCTCACATTGAGGAGCAGTTTGGTGGTGGGCGTTTGCTTGCTTGCATTTCCTCTAGACCTGGTCAATGTGGCAGAGCTGATGGGTAATTTATTTGAGTTGTGATTATTTTTAATATGTTTATAACGAACCCTTTCGTATTTGTTAATTGTGTTTTTTTCTTCTTGAATTTATGCAGCTACATTCTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAAGAAGAAGGGAAAGGGTGCTGCTTGATTTTAGTGTTTTCCAAATTTTTATATGGCTTTAGTTGCTTTTATGTGTTGCTGGTACCATTTAAGGTGATGTTTTGAGCCACAGGACATCGATTAGTGCAAATTATCTTGTTAGTCCTTCGCAAATTGGCATCGTAATTTTGTTTTGAACTGTTTTTGCTACTGATGAGTTATAATTTTTATTAATTAATGTCTTGCTATTCTTATTGTTGGGTACTGGGGGATGGGGTTTTCAATAGCAGATAAATGTGTAAGAGCTAGTATTCATTCAATTATT

Coding sequences of Glyma03g21710

Limit To All Plant Sequences

>Glyma03g21710.1   sequence type=CDS   gene model=Glyma03g21710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTATCTCCAGAGATTCTATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGGCCTGGAGGAAAAAGAGAAAGTATGAGCTTGGTCGCCAGCCTGCTAACACTAAGCTGTCAAGCAACAAGACAGTCAGGAGGATCCGTGTTAGAGGTGGAAATGTGAAATGGAGGGCATTGAGATTGGATACTGGAAATTACTCCTGGGGAAGTGAAGCTGTAACTCGCAAGACTCGTGTACTAGATGTGGTTTACAATGCCTCAAACAATGAGCTTGTGCGTACTCAGACTCTTGTCAAAAGTGCTATCGTTCAGGTTGATGCTGCTCCATTCAAACAGTGGTATCTTCAGCACTATGGTGTTGAGATTGGTAGGAAAAAGAAGACAGCTGCCAAGAAGGAAACTGCAGAGGAGGGTGGTGATGCTGCTGCAGCTGCAGAAGAAGCCAAAAAGAGTAACCATGTGCAGAGAAAATTGGAGAAGCGCCAGAAAGATCGAAAGCTTGATGCTCACATTGAGGAGCAGTTTGGTGGTGGGCGTTTGCTTGCTTGCATTTCCTCTAGACCTGGTCAATGTGGCAGAGCTGATGGCTACATTCTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAAGAAGAAGGGAAAGGGTGCTGCTTGA

>Glyma03g21710.2   sequence type=CDS   gene model=Glyma03g21710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTATCTCCAGAGATTCTATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGGCCTGGAGGAAAAAGAGAAAGTATGAGCTTGGTCGCCAGCCTGCTAACACTAAGCTGTCAAGCAACAAGACAGTCAGGAGGATCCGTGTTAGAGGTGGAAATGTGAAATGGAGGGCATTGAGATTGGATACTGGAAATTACTCCTGGGGAAGTGAAGCTGTAACTCGCAAGACTCGTGTACTAGATGTGGTTTACAATGCCTCAAACAATGAGCTTGTGCGTACTCAGACTCTTGTCAAAAGTGCTATCGTTCAGGTTGATGCTGCTCCATTCAAACAGTGGTATCTTCAGCACTATGGTGTTGAGATTGGTAGGAAAAAGAAGACAGCTGCCAAGAAGGAAACTGCAGAGGAGGGTGGTGATGCTGCTGCAGCTGCAGAAGAAGCCAAAAAGAGTAACCATGTGCAGAGAAAATTGGAGAAGCGCCAGAAAGATCGAAAGCTTGATGCTCACATTGAGGAGCAGTTTGGTGGTGGGCGTTTGCTTGCTTGCATTTCCTCTAGACCTGGTCAATGTGGCAGAGCTGATGGGTAA

Predicted protein sequences of Glyma03g21710

Limit To All Plant Sequences

>Glyma03g21710.1   sequence type=predicted peptide   gene model=Glyma03g21710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRVLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNHVQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA*

>Glyma03g21710.2   sequence type=predicted peptide   gene model=Glyma03g21710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRVLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKETAEEGGDAAAAAEEAKKSNHVQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADG*

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