Glyma03g21680 - SoyBase

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Report for Sequence Feature Glyma03g21680

Feature Type:	gene_model
Chromosome:	Gm03
Start:	27473562
stop:	27477767
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g21680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48580	AT	Annotation by Michelle Graham. TAIR10: FK506- and rapamycin-binding protein 15 kD-2 \| chr5:19696156-19697304 REVERSE LENGTH=163	SoyBase	E_val: 3.00E-74	ISS
GO:0000413	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein peptidyl-prolyl isomerization	SoyBase	N/A	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0018208	GO-bp	Annotation by Michelle Graham. GO Biological Process: peptidyl-proline modification	SoyBase	N/A	ISS
GO:0019932	GO-bp	Annotation by Michelle Graham. GO Biological Process: second-messenger-mediated signaling	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009543	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003755	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity	SoyBase	N/A	ISS
GO:0005528	GO-mf	Annotation by Michelle Graham. GO Molecular Function: FK506 binding	SoyBase	N/A	ISS
KOG0544	KOG	FKBP-type peptidyl-prolyl cis-trans isomerase	JGI		ISS
KOG0549	KOG	FKBP-type peptidyl-prolyl cis-trans isomerase	JGI		ISS
PTHR10516	Panther	FK506 BINDING PROTEIN	JGI		ISS
PTHR10516:SF118	Panther	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	JGI		ISS
PF00254	PFAM	FKBP-type peptidyl-prolyl cis-trans isomerase	JGI		ISS
UniRef100_I1JM67	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glycine max RepID=I1JM67_SOYBN	SoyBase	E_val: 3.00E-102	ISS
UniRef100_I1JM67	UniRef	Annotation by Michelle Graham. Best UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glycine max RepID=I1JM67_SOYBN	SoyBase	E_val: 3.00E-102	ISS

Expression Patterns of Glyma03g21680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g21680 not represented in the dataset	Glyma03g21680 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g21680

Paralog	Evidence	Comments
Glyma16g10750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g21680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g086100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g21680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g21680

Limit To All Plant Sequences

>Glyma03g21680.2   sequence type=transcript   gene model=Glyma03g21680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTAATTTCAGTTCACACTCTCATCAGGGTCAGGAATTGAACCGGTTCTTGTCCTATTAAATAACACTACCCACGCACTGAGTTAGAGTGAGAGAAACTAGTGACTGACTTTTCGAGAAAGGAAAAAAAAAGAGTTTCCGGCATTATTCCATCATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGGTATTGTTGTTCCCTTCCTCTTCTTCCCAATCTGCAAAAATTTCCAACACCTCTTTCTTTTTATTGCTCTTCATTCTTCGCCGCATTTTCAATCCGCAGTTACTTCAGATCTCGTTAATTTTCCGTTTCAATTCATCATTTTTTTTCTATGGTTTCTCTTTGCCGTTTATGTTTTTCTTTTTTGCTTTGGCGTTCTGACTTTTTTTTTCTGTTCTGTGTTTCAGTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGGTGTAGCCTTTAACCTATTACTTTGATTAAGATCCATTGCATCTTTTATAGTTTAGGTTAAAGGTTTCGATTAATTAACATTTGCCGATCTAAAAAAAAAGGTTTCGAATAATTTGTACGGAAAGAGGAGTTTGCATAAAGTGTTTTTAATTAAAAATTAAAATTAAAATTCGTTGTCTTGGTATATTTTTTAAGTTGATGCTGGATCCCGATAGAATGTAATGGGTATATTGCTTGATGAGTGCAACCACATTGAGCAGTCTGGAAATTTGTTTTGAAATGTAACTGTATAAGTGTGGTTTTCTTCTCTTGGTTCAGCTGCAAAGTCAATGGGTATTTTAAAAAAAAATATGTAAAATAATTGCATGGAAATCTTATGGCATCACAGGTGCTTGGATATTTATGTATTGTTTCATGTAAGTTGAATTGTGTAAAAGTGCAGTGAAAAGCCTTGCACTGGGGAGGAAGATTATGTTACTGTGTTATGCATTTGAAACAGCTAAAATAATTGTTGATCTTTTAGGCTATATTACTATATTAGGTACTATTTTCATTCTCAAGAAAAAAAAAATTGTGGTAGTAGTATGCTACTATGCTTGGCATTTTGTGTTTCAACTTTCAAAATAAAGTGTAAATTCATGATTGGAGTCTGAATATAAACAGTGTCCTTTCAGTGAAGGAAAGCAAGGTATGTTTATGGGCTTTACACATATATGTGGTAATTTGTTGTGGAGATTGAAAACAGGGAAAATGTTGTTTTCCACGGGGAACAGTGCAACATTGTTTGTTTCCAGCGATACTGAAGTTTTGACTTGTCAATATGCATTAGCAATACTATGGTGAAACTGAGTTTTATGCCCTAGTTTTTGCTTACTATTGATGATCTCTGTCTCTTTCCAGCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGGGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGAAAATACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAAGTTTAGGCGAAGAAAAAGAAAACTCCGAACTGTAGACAAATCAAAAGAAATGGATAGTTTGAGTTTTTGCTGTCTTAGCTTATTTTTGTTCCTCAATAATATGTTTTTATGACCCAAGGTTTCACTGTTTAAAGATGAGGCTAATTTAGAAAGATTTATCCTGGTGTACCCTATCATTTGAATTCATCTCTACCTAGTATTTATTAGCGATTGACCTGTTTGAATACTCTCAGAAAATAGTTTTGGTTTTCAAACATTAAAAATAACTTTTTTTAGAACACTTG

>Glyma03g21680.3   sequence type=transcript   gene model=Glyma03g21680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGTGAGAGAAACTAGTGACTGACTTTTCGAGAAAGGAAAAAAAAAGAGTTTCCGGCATTATTCCATCATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGGGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGGTATGTTGTGCATAAACAACTTCAGTCTGTTAATTTTCTGGTTTCATTACCTATAAAAGTGACTAGCTGCTGTGCTTGTTTGCTTATTTAATGAAAATGAAAGTAAGTAGATCAAATTAAAGAGATAAAATATGCTGCAAACTGTAAATAAATTGTATGCCAGATCTCAGTAGCACAATGGAAAGAGTTGTGGAAGTG

Coding sequences of Glyma03g21680

Limit To All Plant Sequences

>Glyma03g21680.1   sequence type=CDS   gene model=Glyma03g21680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGGGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGAAAATACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAAGTTTAGGCGAAGAAAAAGAAAACTCCGAACTGTAG

>Glyma03g21680.2   sequence type=CDS   gene model=Glyma03g21680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCTCTGTCTCTTTCCAGCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGGGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGAAAATACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAAGTTTAGGCGAAGAAAAAGAAAACTCCGAACTGTAG

>Glyma03g21680.3   sequence type=CDS   gene model=Glyma03g21680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGGGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGGTATGTTGTGCATAAACAACTTCAGTCTGTTAATTTTCTGGTTTCATTACCTATAA

Predicted protein sequences of Glyma03g21680

Limit To All Plant Sequences

>Glyma03g21680.1   sequence type=predicted peptide   gene model=Glyma03g21680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNALPILLFFLFVSALVYAKKTGDVTELQIGVKHKPASCEVLAHKGDRVKVHYRGKLTDGTVFDSSFERNNPIEFELGTGQVIKGWDQGLLGMCLGEKRKLKIPAKLGYGDQGSPPTIPGGATLIFDTELVGVNDKSLGEEKENSEL*

>Glyma03g21680.2   sequence type=predicted peptide   gene model=Glyma03g21680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MISVSFQHKPASCEVLAHKGDRVKVHYRGKLTDGTVFDSSFERNNPIEFELGTGQVIKGWDQGLLGMCLGEKRKLKIPAKLGYGDQGSPPTIPGGATLIFDTELVGVNDKSLGEEKENSEL*

>Glyma03g21680.3   sequence type=predicted peptide   gene model=Glyma03g21680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNALPILLFFLFVSALVYAKKTGDVTELQIGVKHKPASCEVLAHKGDRVKVHYRGKLTDGTVFDSSFERNNPIEFELGTGQVIKGMLCINNFSLLIFWFHYL*

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