SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G25160 | AT | Annotation by Michelle Graham. TAIR10: ER lumen protein retaining receptor family protein | chr3:9160337-9162023 REVERSE LENGTH=272 | SoyBase | E_val: 2.00E-109 | ISS |
| GO:0006621 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein retention in ER lumen | SoyBase | N/A | ISS |
| GO:0015031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein transport | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0046923 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ER retention sequence binding | SoyBase | N/A | ISS |
| KOG3106 | KOG | ER lumen protein retaining receptor | JGI | ISS | |
| PTHR10585 | Panther | ER LUMEN PROTEIN RETAINING RECEPTOR-RELATED | JGI | ISS | |
| PTHR10585:SF10 | Panther | ER LUMEN PROTEIN RETAINING RECEPTOR | JGI | ISS | |
| PF00810 | PFAM | ER lumen protein retaining receptor | JGI | ISS | |
| UniRef100_B9SYM6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ER lumen protein retaining receptor, putative n=1 Tax=Ricinus communis RepID=B9SYM6_RICCO | SoyBase | E_val: 2.00E-108 | ISS |
| UniRef100_I1JM55 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JM55_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g20420 not represented in the dataset |
Glyma03g20420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g084400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g20420.1 sequence type=CDS gene model=Glyma03g20420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGATCAAAGATAGGTAATTCCCCATTGAATGTTTTGTTTGAGAGGTTGAGGAAATTGTCAATGAAAGTGAAGATCCTTTTGGGGGTATTGTTTGCTTTATGTGCTTTGGTGGCCTTAAAGTTAATCGTCAAAAGGCACTACTATTTCTTCATAGCCTCTGAAGTAGCCCATGCTGCTGGGACAATTGCCCTCGTATACAAGCTTTTCGCCCTAAAGACCTGCTCTGGTTTATCACTTATAACCCAAGAGCTCACAGCTTTATTCCTAGCAGGAAGAATATGTTGTAGCAACTTCGCAGTGGCTAGCATGCACACCTATCTAGATCTGATATCTCTTTTATCAACATTATTGATCATATGGATGATAAGATTCAAGTTAAAGTCATCCTATATCAAAGAGCTTGATAATATGCGACTATACTTTGTGGTGGTGCCTTCTGCAATCCTTGCCATAATAATCCACCCTTATTCACCTCACTGGAATTTCAGTCGAATTGTTTTCGCATTCAGTTTATATTTAGAAGCTGTTTCTGTTCTCCCTCAACTTCGTTTTCTGCAGAATGCAAAGATGATTGAAACATTTACAGGGTATTATGTATTCGCTCTCGGTGTTTCAAGATTCTTGGCACTGGCTCATTGGATAATTCTGATTTATGAGACTCGAGGGGGATTTCTATTTTTGGCTGGGAGTGGCTATTTCTGGTTCTTGGCAGCTTTTATCGGAGAGATTGTTCAATCGTTCATCTTAGCTGACTTCTGTTACTATTACATAAAGAGCTTCATGCAAGGACAACTTTTGAGGAAAATGCCTGTTTAA
>Glyma03g20420.1 sequence type=predicted peptide gene model=Glyma03g20420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSKIGNSPLNVLFERLRKLSMKVKILLGVLFALCALVALKLIVKRHYYFFIASEVAHAAGTIALVYKLFALKTCSGLSLITQELTALFLAGRICCSNFAVASMHTYLDLISLLSTLLIIWMIRFKLKSSYIKELDNMRLYFVVVPSAILAIIIHPYSPHWNFSRIVFAFSLYLEAVSVLPQLRFLQNAKMIETFTGYYVFALGVSRFLALAHWIILIYETRGGFLFLAGSGYFWFLAAFIGEIVQSFILADFCYYYIKSFMQGQLLRKMPV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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