SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G07250 | AT | Annotation by Michelle Graham. TAIR10: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein | chr3:2300579-2308305 REVERSE LENGTH=1294 | SoyBase | E_val: 1.00E-25 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0006913 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleocytoplasmic transport | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| PF07897 | PFAM | Protein of unknown function (DUF1675) | JGI | ISS | |
| UniRef100_F4JED3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nuclear transport factor 2 and RNA recognition motif domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4JED3_ARATH | SoyBase | E_val: 7.00E-23 | ISS |
| UniRef100_I1JM54 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JM54_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g20380 not represented in the dataset |
Glyma03g20380 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g084300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g20380.1 sequence type=CDS gene model=Glyma03g20380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTGAAGTCGAAGAGATAGAGCTGGATTTGGCGTTGTCCATAGGGGGTAGTTTCGGGAAACACACGGTGGAGAAGCCCGCACCGGATTCCGAAGCGCGTGTTTCAAATTCGGATAGTCGCGATGGAATGCGCGTGGTGGTGGAGCCGAGCGACAAGCACGACATTCAGGCGTTAAGGAGAATGGAGGCGAAAAAGAAGACAGAGCAGAAGAGGGAGCGCGTGAGGGAACCGTCCGAGCCCGAATTGAAACGGGATTTCAAGAGGGAGAAAACAGAATACGGGAACGGCGTTAGTGGCGCGTGGAATGCGACGACGACGCCGTTTGACCTGCACCAATTCCCGACGGTGCAGTACTTGCCGTTGAATAACGGGTCTCCGTTACCGTGCTGGGTCGGAGGGGAAAAGATTGTGGGTGCTGGAGTTGACGGCGTTAACGGCGGAAGAGGAGGAAATATCAAAGCCCAGTCGAATGGGTCTTCCAGGTGCAGTTCTTCTGTGGTTTCGGATTACCAAAGCTCTTCTGGTGAAGATGGAGGCAGCACAGACAGCCACAGCCATTCAGTTCATTCCTTGGCAGAACCAACCCAATTAAACACTTCCAAGGAAACAATAAGCATAGGAACCCAACCTGAAGAAAGTGTTGTTTCTGCTTCATCTCACCCCATCATGAGACCCAAACAAGGAAACAACACCATCACCACCATCCAAGAGATGAAGCACATTGCAAAGGAAAAAACTCAAGAACCAATAATATTGCCAATTATTGATCTCAAACCTTTGTCCAACGAAAACATAACCAAAGTTGAAATAATGGGAAAGACTCCAAAGCCTCTCTCTCAAACCTCTTCTTCACTCCCTCAAATGCCCTATGTGTTCACAAAAGGGGACAATGGGAGAACGGTTAATGGGTTTCTCTACAGATACACAAAATCTGAGGTCAGCATTGTTTGTGTCTGCCATGGAAGCACATTTTCACCTGCGGAGTTTGTGCAGCATGCAGGGGGCACTGACACCACGCACCCTCTAAGGCACATCACTGTTATTCCTTCTGCATTTGGGTGA
>Glyma03g20380.1 sequence type=predicted peptide gene model=Glyma03g20380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVEVEEIELDLALSIGGSFGKHTVEKPAPDSEARVSNSDSRDGMRVVVEPSDKHDIQALRRMEAKKKTEQKRERVREPSEPELKRDFKREKTEYGNGVSGAWNATTTPFDLHQFPTVQYLPLNNGSPLPCWVGGEKIVGAGVDGVNGGRGGNIKAQSNGSSRCSSSVVSDYQSSSGEDGGSTDSHSHSVHSLAEPTQLNTSKETISIGTQPEESVVSASSHPIMRPKQGNNTITTIQEMKHIAKEKTQEPIILPIIDLKPLSNENITKVEIMGKTPKPLSQTSSSLPQMPYVFTKGDNGRTVNGFLYRYTKSEVSIVCVCHGSTFSPAEFVQHAGGTDTTHPLRHITVIPSAFG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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